TCONS_00006990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006990
Unique NameTCONS_00006990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006990 ID=TCONS_00006990|Name=TCONS_00006990|organism=Clytia hemisphaerica|type=transcript|length=841bp
atatattttttggGAGGAAagtattttgagatttttatttttttgttaaa
gtgtgaaaaaccaaaaatgaaaataagtaaATTATTTAATGTCTTTATTT
GTCTTAAGAACTTGTAACTTTGTCTTGTAACTTTCCGGAGGTACCATCAG
TAAAATTTTCGCCCAGTCACGATATTTACATTTGCCAAGCAAAAATACCG
TATTCCTGTCAAAATTAGAACCTCTCACAAATTCTTTATAACATCTGAGA
GTTTTTTTCCCCTAGCAGTTTgcatataataaaaataattccgATTGGCA
TCACTATCCATGGTTAAAAGCTCTGATTGAATGGGTTAGCTTTGATTCGA
CAAGGGTCTTTAGAGCCTCTCACATACTCTTTATAACATCTGACAGTTTT
TTCCGCTAGCAATTTGCATATAATAAAAATACTCTCGATTGACATCACTA
TCCATGGTTAAAAGCTCTGATTGAAAGGGTTAGCTTTGATTCGACAAGGG
TCTTTAGAGCCTCTCACATACTCTTTATAACATCTAACAGTTTCCTCACC
AGCAGTTTGCATATAATAAAAGTACTCCAGATTGACAGTTTCCTCACAAG
CAGTTTGCATTTAATAGAAATACTCCCGATTGACATCACTATCCATGGTT
AAAAGCTCTGATTGAATGGGTTAGCTTTGATTCGACAAGGGTCTTTAGAG
CCTCTCACATACTCTTTATAACATCTAACAGTTTCTTCACCAGCCGTTTG
CATATAATAAAAGTACTCCCGATTGACATCACTATCCATGGTTAAAAGCT
CTGATTGAATGGTTTAGCTTTGATTCGACAAGGGTCTTTAG
Run BLAST on NCBI

transcript from alignment at sc0000072:282680..283520

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006990 ID=TCONS_00006990|Name=TCONS_00006990|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at sc0000072:282680..283520 (Clytia hemisphaerica)
CTAAAGACCCTTGTCGAATCAAAGCTAAACCATTCAATCAGAGCTTTTAA
CCATGGATAGTGATGTCAATCGGGAGTACTTTTATTATATGCAAACGGCT
GGTGAAGAAACTGTTAGATGTTATAAAGAGTATGTGAGAGGCTCTAAAGA
CCCTTGTCGAATCAAAGCTAACCCATTCAATCAGAGCTTTTAACCATGGA
TAGTGATGTCAATCGGGAGTATTTCTATTAAATGCAAACTGCTTGTGAGG
AAACTGTCAATCTGGAGTACTTTTATTATATGCAAACTGCTGGTGAGGAA
ACTGTTAGATGTTATAAAGAGTATGTGAGAGGCTCTAAAGACCCTTGTCG
AATCAAAGCTAACCCTTTCAATCAGAGCTTTTAACCATGGATAGTGATGT
CAATCGAGAGTATTTTTATTATATGCAAATTGCTAGCGGAAAAAACTGTC
AGATGTTATAAAGAGTATGTGAGAGGCTCTAAAGACCCTTGTCGAATCAA
AGCTAACCCATTCAATCAGAGCTTTTAACCATGGATAGTGATGCCAATcg
gaattatttttattatatgcAAACTGCTAGGGGAAAAAAACTCTCAGATG
TTATAAAGAATTTGTGAGAGGTTCTAATTTTGACAGGAATACGGTATTTT
TGCTTGGCAAATGTAAATATCGTGACTGGGCGAAAATTTTACTGATGGTA
CCTCCGGAAAGTTACAAGACAAAGTTACAAGTTCTTAAGACAAATAAAGA
CATTAAATAATttacttattttcatttttggtttttcacactttaacaaa
aaaataaaaatctcaaaatactTTCCTCccaaaaaatatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003910XLOC_003910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006990-exon-sc0000072-1491911889:282680..283520TCONS_00006990-exon-sc0000072-1491911889:282680..283520Clytia hemisphaericaexon
TCONS_00006990-exon-sc0000072-1510915933:282680..283520TCONS_00006990-exon-sc0000072-1510915933:282680..283520Clytia hemisphaericaexon
TCONS_00006990-exon-sc0000072-1575043694:282680..283520TCONS_00006990-exon-sc0000072-1575043694:282680..283520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:282680..283520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0635597	0	0	0.0598208	0	0.135132	0.141913	0.117188	0.454984	0.224316	2.65072	0.969295	1.78504	4.1049	0.168563	0.172772	0.895102	0.187332	0.271376	0.238262	0.450548	0.292581	0.723245	0.591689	0.307893	0	0.0623062	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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