TCONS_00006989 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006989
Unique NameTCONS_00006989
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006989 ID=TCONS_00006989|Name=TCONS_00006989|organism=Clytia hemisphaerica|type=transcript|length=306bp
CAAATATTTAGGTACGGACCCGCATAATAAATTGTACAAAACTTCGTAac
tatcattgaaaattgagagttgataaagccttaaaatgttcttaatttgt
tcttaatattttggtcatcgatgCCTCCAAAACTTGATATTAAAAAATCG
TCTGAacttgcacctgaaaacctcaaattttgcacctgcACTCGACTTTT
TCCGAGTCGTGCACTCCAGACCCCCCTCTTTAGCTTATTCATACGTGACT
CCAATTACAAAAGGAATCTGGATAATTATCTTATAGTAGAATTATTTAAC
TATTTC
Run BLAST on NCBI

transcript from alignment at sc0000072:261670..261975

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006989 ID=TCONS_00006989|Name=TCONS_00006989|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0000072:261670..261975 (Clytia hemisphaerica)
GAAATAGTTAAATAATTCTACTATAAGATAATTATCCAGATTCCTTTTGT
AATTGGAGTCACGTATGAATAAGCTAAAGAGGGGGGTCTGGAGTGCACGA
CTCGGAAAAAGTCGAGTgcaggtgcaaaatttgaggttttcaggtgcaag
tTCAGACGATTTTTTAATATCAAGTTTTGGAGGcatcgatgaccaaaata
ttaagaacaaattaagaacattttaaggctttatcaactctcaattttca
atgatagtTACGAAGTTTTGTACAATTTATTATGCGGGTCCGTACCTAAA
TATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003909XLOC_003909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006989-exon-sc0000072-1491911889:261670..261975TCONS_00006989-exon-sc0000072-1491911889:261670..261975Clytia hemisphaericaexon
TCONS_00006989-exon-sc0000072-1510915933:261670..261975TCONS_00006989-exon-sc0000072-1510915933:261670..261975Clytia hemisphaericaexon
TCONS_00006989-exon-sc0000072-1575043694:261670..261975TCONS_00006989-exon-sc0000072-1575043694:261670..261975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:261670..261975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.356415	0.635621	0.809739	1.47867	3.1159	2.3495	1.76647	2.1641	1.75782	0.370295	1.22481	0.972315	0	0	1.33633	0.274375	0	0	0.813134	0.559198	0	0	0	0.392415	0	2.00466	1.582	1.21701	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006989 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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