TCONS_00006979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006979
Unique NameTCONS_00006979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006979 ID=TCONS_00006979|Name=TCONS_00006979|organism=Clytia hemisphaerica|type=transcript|length=864bp
GGATTTGAGCATATCAGATATCTTTATACAGAATTTTTTTCGTATTATCA
CACAGGATGGGGTCACCCGATTTTGTCGTTCGAATGATATGTAAGATACA
GGCTTTTcgcgttcttataaaaaagtgatatataaaaaaaacaaatatta
ttTACATTCCTAATAAAAATACCATGGGTTTCTATTGTATTTCAATACTA
ATCTTTGTTTAAAACGCATTTGGGAATTTACTGGTCAATACGATAACAAT
GAGTTCCATAAAGTTAataaaagaacattttgaatCTTTTGACAAGAAGA
TTTTGAATCTTTTGACTAGCAATACTTTCAACCAAATGTAACGTGTCTTA
TAATACGACAAACCTTTTGTTGGACATTTATTTAGACTCAGGCTTTTTGG
TTTTATTAGCcattttgaaagttcttctaAAACGATACCAAGCACGCCAT
TGGCCTAACTCTCTAACAGTCCTCAAAGTGTAAAATAAAGTCCCAGTTAC
ACCAAAAGCAATCAATGAATAAGCACTTATAGTAGCCACTGCAACCATTT
CATCAAtttgtttcatatcaggaaGCACATCTGGTACAACAGACCCATAG
ATGTCAGATACTAGATTACCAGCAGTGTTGGTAGCACCTGTAACTTTCTT
GGCACTACCAAAAGCTATATGTTCTAATACACTTGTTAGacctttttcat
tttcttcatctttcttATTATTTGACATCTTGGATGTTTTTAATTCAGTT
TCTTGCTGCAAGAGAAAAAAgatcaataaaaatttcataGCTAACATCCT
TTCACcttaagtgtgcactcttttttgcACTCTCTATCAGGTAGCACTGG
TACAACAGATCCAT
Run BLAST on NCBI

protein sequence of TCONS_00006979-protein

>TCONS_00006979-protein ID=TCONS_00006979-protein|Name=TCONS_00006979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MLAMKFLLIFFLLQQETELKTSKMSNNKKDEENEKGLTSVLEHIAFGSAK
KVTGATNTAGNLVSDIYGSVVPDVLPDMKQIDEMVAVATISAYSLIAFGV
TGTLFYTLRTVRELGQWRAWYRFRRTFKMANKTKKPESK
Run BLAST on NCBI

transcript from alignment at sc0000072:108744..109607

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006979 ID=TCONS_00006979|Name=TCONS_00006979|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at sc0000072:108744..109607 (Clytia hemisphaerica)
ATGGATCTGTTGTACCAGTGCTACCTGATAGAGAGTgcaaaaaagagtgc
acacttaagGTGAAAGGATGTTAGCtatgaaatttttattgatcTTTTTT
CTCTTGCAGCAAGAAACTGAATTAAAAACATCCAAGATGTCAAATAATaa
gaaagatgaagaaaatgaaaaaggtCTAACAAGTGTATTAGAACATATAG
CTTTTGGTAGTGCCAAGAAAGTTACAGGTGCTACCAACACTGCTGGTAAT
CTAGTATCTGACATCTATGGGTCTGTTGTACCAGATGTGCttcctgatat
gaaacaaaTTGATGAAATGGTTGCAGTGGCTACTATAAGTGCTTATTCAT
TGATTGCTTTTGGTGTAACTGGGACTTTATTTTACACTTTGAGGACTGTT
AGAGAGTTAGGCCAATGGCGTGCTTGGTATCGTTTtagaagaactttcaa
aatgGCTAATAAAACCAAAAAGCCTGAGTCTAAATAAATGTCCAACAAAA
GGTTTGTCGTATTATAAGACACGTTACATTTGGTTGAAAGTATTGCTAGT
CAAAAGATTCAAAATCTTCTTGTCAAAAGattcaaaatgttcttttatTA
ACTTTATGGAACTCATTGTTATCGTATTGACCAGTAAATTCCCAAATGCG
TTTTAAACAAAGATTAGTATTGAAATACAATAGAAACCCATGGTATTTTT
ATTAGGAATGTAaataatatttgttttttttatatatcacttttttataa
gaacgcgAAAAGCCTGTATCTTACATATCATTCGAACGACAAAATCGGGT
GACCCCATCCTGTGTGATAATACGAAAAAAATTCTGTATAAAGATATCTG
ATATGCTCAAATCC

Coding sequence (CDS) from alignment at sc0000072:108744..109607

>TCONS_00006979 ID=TCONS_00006979|Name=TCONS_00006979|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000072:108744..109607 (Clytia hemisphaerica)
ATGTTAGCtatgaaatttttattgatcTTTTTTCTCTTGCAGCAAGAAAC
TGAATTAAAAACATCCAAGATGTCAAATAATaagaaagatgaagaaaatg
aaaaaggtCTAACAAGTGTATTAGAACATATAGCTTTTGGTAGTGCCAAG
AAAGTTACAGGTGCTACCAACACTGCTGGTAATCTAGTATCTGACATCTA
TGGGTCTGTTGTACCAGATGTGCttcctgatatgaaacaaaTTGATGAAA
TGGTTGCAGTGGCTACTATAAGTGCTTATTCATTGATTGCTTTTGGTGTA
ACTGGGACTTTATTTTACACTTTGAGGACTGTTAGAGAGTTAGGCCAATG
GCGTGCTTGGTATCGTTTtagaagaactttcaaaatgGCTAATAAAACCA
AAAAGCCTGAGTCTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003899XLOC_003899Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006979-proteinTCONS_00006979-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006979-exon-sc0000072-1491911889:108744..109607TCONS_00006979-exon-sc0000072-1491911889:108744..109607Clytia hemisphaericaexon
TCONS_00006979-exon-sc0000072-1510915933:108744..109607TCONS_00006979-exon-sc0000072-1510915933:108744..109607Clytia hemisphaericaexon
TCONS_00006979-exon-sc0000072-1575043694:108744..109607TCONS_00006979-exon-sc0000072-1575043694:108744..109607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:108744..109607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.2907	22.8178	34.8342	33.3598	16.2157	11.3132	11.9776	12.7779	15.108	11.0812	10.2069	9.848	7.60087	8.94107	13.0715	13.4996	23.5021	18.3376	4.31835	5.36236	15.03	14.2535	27.9468	25.0124	7.61818	8.45987	9.87795	6.34106	10.0999	11.2702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top