TCONS_00006978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006978
Unique NameTCONS_00006978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006978 ID=TCONS_00006978|Name=TCONS_00006978|organism=Clytia hemisphaerica|type=transcript|length=338bp
aaataacaaataaataatAGAATATGAAAATGAATATTCGAAATGAAATG
TTGAAACTTGAACATCCAGATATCAATCACTGAATGGTTTCTGGTGACGA
TACGTTATTTTTGCCCTGGATAAGCACCCTGATATCAACATCAACACCAA
GAAAAAGTaagtcttttttatttcaatccaTCTGTCCATCATAGGCTATT
TCACAGTcaaaatggatcatgggtaatcaggactgattgcgcctccataa
cgGCTTCCCATTGGCTAGATGCTTGGACAACTGTTTCAAAGTCCAAGAGT
TTTTAGGTCAATTGAAAGCATAAAAATGCCATTGGGAG
Run BLAST on NCBI

transcript from alignment at sc0000072:69585..69922

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006978 ID=TCONS_00006978|Name=TCONS_00006978|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000072:69585..69922 (Clytia hemisphaerica)
CTCCCAATGGCATTTTTATGCTTTCAATTGACCTAAAAACTCTTGGACTT
TGAAACAGTTGTCCAAGCATCTAGCCAATGGGAAGCcgttatggaggcgc
aatcagtcctgattacccatgatccattttgACTGTGAAATAGCCTATGA
TGGACAGAtggattgaaataaaaaagacttACTTTTTCTTGGTGTTGATG
TTGATATCAGGGTGCTTATCCAGGGCAAAAATAACGTATCGTCACCAGAA
ACCATTCAGTGATTGATATCTGGATGTTCAAGTTTCAACATTTCATTTCG
AATATTCATTTTCATATTCTattatttatttgttattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003898XLOC_003898Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006978-exon-sc0000072-1491911889:69585..69922TCONS_00006978-exon-sc0000072-1491911889:69585..69922Clytia hemisphaericaexon
TCONS_00006978-exon-sc0000072-1510915933:69585..69922TCONS_00006978-exon-sc0000072-1510915933:69585..69922Clytia hemisphaericaexon
TCONS_00006978-exon-sc0000072-1575043694:69585..69922TCONS_00006978-exon-sc0000072-1575043694:69585..69922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:69585..69922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.22535	5.63192	4.04392	5.28758	0	0.586146	0	0.33208	9.24895	18.085	4.47125	5.51196	2.37778	3.61324	1.73526	1.67736	2.48076	3.59737	2.34428	7.03626	2.6626	0.778191	4.11513	6.02031	0.295878	0.263526	0	2.01228	1.2266	1.87495
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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