TCONS_00006976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006976
Unique NameTCONS_00006976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1081

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006976 ID=TCONS_00006976|Name=TCONS_00006976|organism=Clytia hemisphaerica|type=transcript|length=1081bp
atgaaatttttcttgaaaataatgATCTTTGTGTTAATTAAACAAGGAGA
AATTTAGGTTGGATAATATCTGATGCCCAACTGTTATTTCATGGCCTgct
tttaatttcaaaacagGGACTTGACCGTAAAGAATTGTTCATCACATCAA
AATTATGGAATACGAAACACGCTGCTGAAGACGTTAGACCTGCGCTGAAG
AAAACCTTGGAGGATTTACAATTAGAATACTTAGATTTATACTTGATTCA
TTGGCCCATTGGACTTCAAAGTGGTCAagataattttcccaaaaacgcAG
ATGGAACATTGAAGTATGCAGAAACTCATTACATGGAAACATGGCCTGAA
TTGGAAAAATGTGTTGATGATGGCTTGGTGAAATCTATTGGTCTATCTAA
CTTCAACAGTAAACAAGTCACACAAGTTTATGATGAATCTCGCATCAAAC
CTGCTGCACTACAATGTGAATGTCATCCATATTTAAATCAAGAACAATTA
ATTGACCATTGTCGTAAACTGAATATCGTCTTCTGCTCCTACAGTCCTCT
TGGATCACCCGACAGACCATGGGCTAAACCAGGTGAACCGTTACTCCTGG
AAGATCCAAAACTCATTGAAGTgggaaaaaaatacaataaaactcCAGCT
CAAGTGTGTATCAAATGGCAGATACAACGTGGTCTTTCAGTCCTTCCAAA
GAGTGTTAACCCAGACAGAATTAAACAAAACTGTGATatttttgactttg
aacTGACAAGAGATGATATGAAAACTGTTGACTCTTTCCATAATGGTTGG
CGTGCATGTCTACCTAAAATTACTctTGACGATGGCACTGTCAAGGAAAG
GGATGCTCACCACTTTTTGTACCCTTTTAATGAACCATTTTAAAGCATCT
TTGATGGATCTCGTCAACCAATATTATGTTATGTTGGGTTGTTGTTAGGC
TTTTGTAGAATACCTATaacaattttttgtaatttttgctaGGCATGATA
TTTCCATTAAAAAAGAAGATCAGATGTTGTATCATTATTATTTTCTTCCT
TTGGAAAGCAAATTAAGGCTCACTGTATCTG
Run BLAST on NCBI

protein sequence of TCONS_00006976-protein

>TCONS_00006976-protein ID=TCONS_00006976-protein|Name=TCONS_00006976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
METWPELEKCVDDGLVKSIGLSNFNSKQVTQVYDESRIKPAALQCECHPY
LNQEQLIDHCRKLNIVFCSYSPLGSPDRPWAKPGEPLLLEDPKLIEVGKK
YNKTPAQVCIKWQIQRGLSVLPKSVNPDRIKQNCDIFDFELTRDDMKTVD
SFHNGWRACLPKITLDDGTVKERDAHHFLYPFNEPF
Run BLAST on NCBI

transcript from alignment at sc0000072:748743..750904-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006976 ID=TCONS_00006976|Name=TCONS_00006976|organism=Clytia hemisphaerica|type=transcript|length=2162bp|location=Sequence derived from alignment at sc0000072:748743..750904- (Clytia hemisphaerica)
ATGAAATTTTTCTTGAAAATAATGATCTTTGTGTTAATTAAACAAGGAGA
AATTTAGGTTGGATAATATCTGATGCCCAACTGTTATTTCATGGCCTGCT
TTTAATTTCAAAACAGGGACTTGACCGTAAAGAATTGTTCATCACATCAA
AATTATGGAATACGAAACACGCTGCTGAAGACGTTAGACCTGCGCTGAAG
AAAACCTTGGAGGATTTACAATTAGAATACTTAGATTTATACTTGATTCA
TTGGCCCATTGGACTTCAAAGTGGTCAAGATAATTTTCCCAAAAACGCAG
ATGGAACATTGAAGTATGCAGAAACTCATTACATGGAAACATGGCCTGAA
TTGGAAAAATGTGTTGATGATGGCTTGGTGAAATCTATTGGTAAGCAAAC
AGCAATATCCATGGAAATAACACATTTTCTGTTGTTGCTATACAAAATTT
ATTTTCCCTTTGATAATTCAAGTATTTTCAGAATATTTTAGTTTGTTATA
TAGTAGAGTCTCCTTAACCAGAATTTTTAACTCAATTGTCTTTAACTCAA
GCAAGTTTTCCCCTTTCAGTTGACAAAGCCTCATAAACCTTTCACTGAAA
CTCAAATTTCTCTAACTGTGTATTTTGAAATGTAATTATCAATGCCACCT
AAACATTTTTCAGGTCTATCTAACTTCAACAGTAAACAAGTCACACAAGT
TTATGATGAATCTCGCATCAAACCTGCTGCACTACAATGTGAATGTCATC
CATATTTAAATCAAGAACAATTAATTGACCATTGTCGTAAACTGAATATC
GTCTGTAAGTTTGTTAGAATTCAATTATAGTTAGATATTCGCCAGGAGAC
TAACGAATTCTGTGTTTTTTACCCTCCCTTTTTTAACAACAACCTTTGTT
AGTAAATTGAGAATCGAGAATTGCAAATTGCAAATTTTCAGTTTTACTCA
ATCATCTGGTGATTAAATATTGTATGGCTGCCCCAACCAACCTTTGAGGT
TCTTTTCCAGTCTTTATCGCTAAATTGTACAATTTTAAAAATTTTGTCAC
AATAAGTAATGTAAATAATATTCCACTCGAATCACTTTTTTTTCAGTCTG
CTCCTACAGTCCTCTTGGATCACCCGACAGACCATGGGCTAAACCAGGTG
AACCGTTACTCCTGGAAGATCCAAAACTCATTGAAGTGGGAAAAAAATAC
AATAAAACTCCAGCTCAAGTGTGTATCAAATGGCAGATACAACGTGGTCT
TTCAGTCCTTCCAAAGAGTGTTAACCCAGACAGAATTAAACAAAACTGTG
ATGTAAGTGTTTCTGGACTGTCCTCTTTCTTGTGAAGATAGTCTTGCCAA
GGGGAGAAGAGAGTGCTAGCCATGCCTATTACCAGTTAACATTATAGGAC
CGAATATTAGGGCAGATTTTGATAAGTAAGATTCATGAAAAGTTGTATAA
TTATACTTCTCTTCTGAGAAATGCTTGCTAATAATTTCAGGTTAAAATTG
CTTAATGACAATGATAATGCAAATACCAATTTCTTAAGATAACCTATCCT
CTTCTTAAACTATACTTTTTTCATGAGACTGTCAATTTCAACCTTTTTTA
CTACTCTTTTTTTGTTTTAGATTTTTGACTTTGAACTGACAAGAGATGAT
ATGAAAACTGTTGACTCTTTCCATAATGGTTGGCGTGCATGTCTACCTAA
AATTACTGTAAGCTTCACATCTTAAAGTAGAGTAACTGAATAAACTTTGC
CCATACAATCAGTCACTGTTTGGTACTTATTACAATTCAAAATTTCAACC
TCTTCTTTGTCTTAAATTCATACCTAAGCTATTTGAAAGCTTATTCTCAC
ATCATTTTTTTTCAAATTTCCAAGCTCTTTGACATGATATTATTTTGATT
TTCAGCTTGACGATGGCACTGTCAAGGAAAGGGATGCTCACCACTTTTTG
TACCCTTTTAATGAACCATTTTAAAGCATCTTTGATGGATCTCGTCAACC
AATATTATGTTATGTTGGGTTGTTGTTAGGCTTTTGTAGAATACCTATAA
CAATTTTTTGTAATTTTTGCTAGGCATGATATTTCCATTAAAAAAGAAGA
TCAGATGTTGTATCATTATTATTTTCTTCCTTTGGAAAGCAAATTAAGGC
TCACTGTATCTG

Coding sequence (CDS) from alignment at sc0000072:748743..750904-

>TCONS_00006976 ID=TCONS_00006976|Name=TCONS_00006976|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at sc0000072:748743..750904- (Clytia hemisphaerica)
CTTGACGATGGCACTGTCAAGGAAAGGGATGCTCACCACTTTTTGTACCC
TTTTAATGAACCATTTTAAATTTTTGACTTTGAACTGACAAGAGATGATA
TGAAAACTGTTGACTCTTTCCATAATGGTTGGCGTGCATGTCTACCTAAA
ATTACTTCTGCTCCTACAGTCCTCTTGGATCACCCGACAGACCATGGGCT
AAACCAGGTGAACCGTTACTCCTGGAAGATCCAAAACTCATTGAAGTGGG
AAAAAAATACAATAAAACTCCAGCTCAAGTGTGTATCAAATGGCAGATAC
AACGTGGTCTTTCAGTCCTTCCAAAGAGTGTTAACCCAGACAGAATTAAA
CAAAACTGTGATGTCTATCTAACTTCAACAGTAAACAAGTCACACAAGTT
TATGATGAATCTCGCATCAAACCTGCTGCACTACAATGTGAATGTCATCC
ATATTTAAATCAAGAACAATTAATTGACCATTGTCGTAAACTGAATATCG
TCTATGGAAACATGGCCTGAATTGGAAAAATGTGTTGATGATGGCTTGGT
GAAATCTATTGCTTGACGATGGCACTGTCAAGGAAAGGGATGCTCACCAC
TTTTTGTACCCTTTTAATGAACCATTTTAAATTTTTGACTTTGAACTGAC
AAGAGATGATATGAAAACTGTTGACTCTTTCCATAATGGTTGGCGTGCAT
GTCTACCTAAAATTACTTCTGCTCCTACAGTCCTCTTGGATCACCCGACA
GACCATGGGCTAAACCAGGTGAACCGTTACTCCTGGAAGATCCAAAACTC
ATTGAAGTGGGAAAAAAATACAATAAAACTCCAGCTCAAGTGTGTATCAA
ATGGCAGATACAACGTGGTCTTTCAGTCCTTCCAAAGAGTGTTAACCCAG
ACAGAATTAAACAAAACTGTGATGTCTATCTAACTTCAACAGTAAACAAG
TCACACAAGTTTATGATGAATCTCGCATCAAACCTGCTGCACTACAATGT
GAATGTCATCCATATTTAAATCAAGAACAATTAATTGACCATTGTCGTAA
ACTGAATATCGTCTATGGAAACATGGCCTGAATTGGAAAAATGTGTTGAT
GATGGCTTGGTGAAATCTATTGCTTGACGATGGCACTGTCAAGGAAAGGG
ATGCTCACCACTTTTTGTACCCTTTTAATGAACCATTTTAAATTTTTGAC
TTTGAACTGACAAGAGATGATATGAAAACTGTTGACTCTTTCCATAATGG
TTGGCGTGCATGTCTACCTAAAATTACTTCTGCTCCTACAGTCCTCTTGG
ATCACCCGACAGACCATGGGCTAAACCAGGTGAACCGTTACTCCTGGAAG
ATCCAAAACTCATTGAAGTGGGAAAAAAATACAATAAAACTCCAGCTCAA
GTGTGTATCAAATGGCAGATACAACGTGGTCTTTCAGTCCTTCCAAAGAG
TGTTAACCCAGACAGAATTAAACAAAACTGTGATGTCTATCTAACTTCAA
CAGTAAACAAGTCACACAAGTTTATGATGAATCTCGCATCAAACCTGCTG
CACTACAATGTGAATGTCATCCATATTTAAATCAAGAACAATTAATTGAC
CATTGTCGTAAACTGAATATCGTCTATGGAAACATGGCCTGAATTGGAAA
AATGTGTTGATGATGGCTTGGTGAAATCTATTGCTTGACGATGGCACTGT
CAAGGAAAGGGATGCTCACCACTTTTTGTACCCTTTTAATGAACCATTTT
AAATTTTTGACTTTGAACTGACAAGAGATGATATGAAAACTGTTGACTCT
TTCCATAATGGTTGGCGTGCATGTCTACCTAAAATTACTTCTGCTCCTAC
AGTCCTCTTGGATCACCCGACAGACCATGGGCTAAACCAGGTGAACCGTT
ACTCCTGGAAGATCCAAAACTCATTGAAGTGGGAAAAAAATACAATAAAA
CTCCAGCTCAAGTGTGTATCAAATGGCAGATACAACGTGGTCTTTCAGTC
CTTCCAAAGAGTGTTAACCCAGACAGAATTAAACAAAACTGTGATGTCTA
TCTAACTTCAACAGTAAACAAGTCACACAAGTTTATGATGAATCTCGCAT
CAAACCTGCTGCACTACAATGTGAATGTCATCCATATTTAAATCAAGAAC
AATTAATTGACCATTGTCGTAAACTGAATATCGTCTATGGAAACATGGCC
TGAATTGGAAAAATGTGTTGATGATGGCTTGGTGAAATCTATTGCTTGAC
GATGGCACTGTCAAGGAAAGGGATGCTCACCACTTTTTGTACCCTTTTAA
TGAACCATTTTAAATTTTTGACTTTGAACTGACAAGAGATGATATGAAAA
CTGTTGACTCTTTCCATAATGGTTGGCGTGCATGTCTACCTAAAATTACT
TCTGCTCCTACAGTCCTCTTGGATCACCCGACAGACCATGGGCTAAACCA
GGTGAACCGTTACTCCTGGAAGATCCAAAACTCATTGAAGTGGGAAAAAA
ATACAATAAAACTCCAGCTCAAGTGTGTATCAAATGGCAGATACAACGTG
GTCTTTCAGTCCTTCCAAAGAGTGTTAACCCAGACAGAATTAAACAAAAC
TGTGATGTCTATCTAACTTCAACAGTAAACAAGTCACACAAGTTTATGAT
GAATCTCGCATCAAACCTGCTGCACTACAATGTGAATGTCATCCATATTT
AAATCAAGAACAATTAATTGACCATTGTCGTAAACTGAATATCGTCTATG
GAAACATGGCCTGAATTGGAAAAATGTGTTGATGATGGCTTGGTGAAATC
TATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003896XLOC_003896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006976-exon-sc0000072-1575043694:750515..750904TCONS_00006976-exon-sc0000072-1575043694:750515..750904Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1575043694:750101..750241TCONS_00006976-exon-sc0000072-1575043694:750101..750241Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1575043694:749603..749808TCONS_00006976-exon-sc0000072-1575043694:749603..749808Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1575043694:749198..749284TCONS_00006976-exon-sc0000072-1575043694:749198..749284Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1575043694:748743..748999TCONS_00006976-exon-sc0000072-1575043694:748743..748999Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1510915933:750515..750904TCONS_00006976-exon-sc0000072-1510915933:750515..750904Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1510915933:750101..750241TCONS_00006976-exon-sc0000072-1510915933:750101..750241Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1510915933:749603..749808TCONS_00006976-exon-sc0000072-1510915933:749603..749808Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1510915933:749198..749284TCONS_00006976-exon-sc0000072-1510915933:749198..749284Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1510915933:748743..748999TCONS_00006976-exon-sc0000072-1510915933:748743..748999Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1491911889:750515..750904TCONS_00006976-exon-sc0000072-1491911889:750515..750904Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1491911889:750101..750241TCONS_00006976-exon-sc0000072-1491911889:750101..750241Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1491911889:749603..749808TCONS_00006976-exon-sc0000072-1491911889:749603..749808Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1491911889:749198..749284TCONS_00006976-exon-sc0000072-1491911889:749198..749284Clytia hemisphaericaexon
TCONS_00006976-exon-sc0000072-1491911889:748743..748999TCONS_00006976-exon-sc0000072-1491911889:748743..748999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006976-proteinTCONS_00006976-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:748743..750904 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
387.204	396.311	391.148	389.798	79.3372	62.2164	157.969	163.265	311.204	262.533	314.672	379.511	407.287	411.113	436.731	407.541	348.398	405.118	287.956	277.791	273.55	273.015	259.369	267.316	273.975	301.863	314.03	324.186	195.533	191.12
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020471Aldo/keto_reductase
IPR023210NADP_OxRdtase_dom
IPR018170Aldo/ket_reductase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00006976 vs. Swiss-Prot (Human)
Match: AK1A1 (Alcohol dehydrogenase [NADP(+)] OS=Homo sapiens GN=AKR1A1 PE=1 SV=3)

HSP 1 Score: 273.863 bits (699), Expect = 8.440e-89
Identity = 135/259 (52.12%), Postives = 185/259 (71.43%), Query Frame = 3 
Query:  114 QGLDRKELFITSKLWNTKHAAEDVRPALKKTXXXXXXXXXXXXXIHWPIGLQSGQDNFPKNADGTLKYAETHYMETWPELEKCVDDGLVKSIGLSNFNSKQVTQVYDESRIKPAALQCECHPYLNQEQLIDHCRKLNIVFCSYSPLGSPDRPWAKPGEPLLLEDPKLIEVGKKYNKTPAQVCIKWQIQRGLSVLPKSVNPDRIKQNCDIFDFELTRDDMKTVDSFHNGWRACLPKITLDDGTVKERDAHHFLYPFNEPF 890
            + + R+ELF+TSKLWNTKH  EDV PAL+KTL DLQLEYLDLYL+HWP   + G + FPKNADGT+ Y  THY ETW  LE  V  GLV+++GLSNFNS+Q+  +   + ++PA LQ ECHPYL Q +LI HC+   +   +YSPLGS DR W  P EP+LLE+P ++ + +KY ++PAQ+ ++WQ+QR +  +PKS+ P RI QN  +FDF  + ++MK +++ +  WR  +P +T+D   V  RDA H LYPFN+P+
Sbjct:   68 KAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMHWPYAFERGDNPFPKNADGTICYDSTHYKETWKALEALVAKGLVQALGLSNFNSRQIDDILSVASVRPAVLQVECHPYLAQNELIAHCQARGLEVTAYSPLGSSDRAWRDPDEPVLLEEPVVLALAEKYGRSPAQILLRWQVQRKVICIPKSITPSRILQNIKVFDFTFSPEEMKQLNALNKNWRYIVPMLTVDGKRVP-RDAGHPLYPFNDPY 325
The following BLAST results are available for this feature:
BLAST of TCONS_00006976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1A18.440e-8952.12Alcohol dehydrogenase [NADP(+)] OS=Homo sapiens GN... [more]
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