TCONS_00006972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006972
Unique NameTCONS_00006972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006972 ID=TCONS_00006972|Name=TCONS_00006972|organism=Clytia hemisphaerica|type=transcript|length=486bp
ACATTATCGAACGGTCGTGTGGTAGCGCTGAAGGAGAAAGGAGAAACAGA
GTACGTCAAATTCGAAGACATCAAAGAGTTCTTGTCGTTGGCTGTCACTA
AGCGGTTGAATGAGTTTAACGAGCAGGTCAACGCCATGCGATGCGGTCTA
GAGAAGGTCGTACCGAAAGCTGTTCTGACGTTGATGACGTGGCAAGAGCT
TGAACATCGTGTTTGCGGTGAGCCTGAAATAACGGTTGAAGCTCTCAAGA
AATCAGCACATTACGAAGATTTTGAGGATGAAAATGACACAACTATCAAA
TATTTATGGCAAGCTATCGAAAAATTCACAAACGagGACCGCAGTCGTTT
CTTAAGGTTTGTAACCGGACGAAGACGGTTACCAACACCCCTGTACATTA
CAAGGAGTAAACTAACAACTCCAGCGAACTCTTTGCCGGAATCAGCCACT
TGTTCACACACTCTTTTCCTTCCAACTTATACCAGG
Run BLAST on NCBI

protein sequence of TCONS_00006972-protein

>TCONS_00006972-protein ID=TCONS_00006972-protein|Name=TCONS_00006972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
TLSNGRVVALKEKGETEYVKFEDIKEFLSLAVTKRLNEFNEQVNAMRCGL
EKVVPKAVLTLMTWQELEHRVCGEPEITVEALKKSAHYEDFEDENDTTIK
YLWQAIEKFTNEDRSRFLRFVTGRRRLPTPLYITRSKLTTPANSLPESAT
CSHTLFLPTYTR
Run BLAST on NCBI

transcript from alignment at sc0000072:711733..714354-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006972 ID=TCONS_00006972|Name=TCONS_00006972|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at sc0000072:711733..714354- (Clytia hemisphaerica)
ACATTATCGAACGGTCGTGTGGTAGCGCTGAAGGAGAAAGGAGAAACAGA
GTACGTCAAATTCGAAGACATCAAAGAGTTCTTGTCGTTGGCTGTCACTA
AGCGGTTGAATGAGTTTAACGAGCAGGTATGTAACCAAATAATCGTTGGT
AATTATTAATGACCTGTACTGAAATCCTGGACTAATGTATGAAACCAAAC
GTTCGCTAGTAATCATCGCTGACCTGTAATAAAGCCCTGGACCAGCAAAG
TGAAGAGGTTTTATCCGTCTCAAAATTCTCCATAATTCACCAAAATTTCA
AGAACATATGCTAATTTGTTGTAAACCATTTTCCGTCTCAGACGAAAAAC
CTTGCTTTGGCCACTGAATTATCATTGACCCACGGACCCTGGACTAATGT
TTATTAACCGGCGCTTTCATATAATTGATACCCTAATGGTAGCACAACCC
GATCTGGATAAATTATGACCCCCATTCTAACATTTGAGTACCATCACCAC
TAAGAATCTCCACGATTCGAACGCCGAGGGGATAATTATTGTTCGAGTTT
TGTGCTTTTGAATCTTGGAAAAACTTTCCCCATTGCAAAACTAGCGTAGT
CTATTTACAAGCTGTTCTTGTTTTTAGGTCAACGCCATGCGATGCGGTCT
AGAGAAGGTCGTACCGAAAGCTGTTCTGACGTTGATGACGTGGCAAGAGC
TTGAACATCGTGTTTGCGGTGAGCCTGAAATAACGGTTGAAGCTCTCAAG
AAATCAGGTAAATTATACACGGGTTTTATACCAGACTCTTCGTCGTTTCT
TCATAAGAACAACAAGATTTTTTAAAGGATTCGGATTCGGACTTTTTTAC
TTTTAAAGTTAATGTTCTCAAAATGTTCTTATTTTTACCATTTTATGAAT
ACTTTAGTTTAGTGCGATTTCCTTAGAAATTGGGTGTTTTTGAATCTGAA
AAGCCTTAGCACGTTATTAACCTGTTCTTACAATTTTGTCAATGGTCTTA
TGTTCTTATGTAATTTTTTCTCTTAACCACTACGCGTTTTTTTAAAGAAC
AAAATTTATAAGATCATTAGGAACATTTTCAGTCTCACGGACTCTAAAAC
ACGCAATTCCTTTGAAGATCGCAGATAAATACTCACAAAATGGTGAAACT
AAGAACATTCTAAGAACATTTTTTAGCTTAAAGCTATAAGAACACCCATA
GGTTTCAAATATTTTGGATATTCTTATAAAAATGAATGTGTACTATTTTC
TTCTTCAGCACATTACGAAGATTTTGAGGATGAAAATGACACAACTATCA
AATATTTATGGCAAGCTATCGAAAAATTCACAAACGGTGAGTTTACACTA
GTATTCATATTGCGTCAGGGGCTTTTTCTGTTCCGCTGAGAAACTGTTAT
TAATAGTTCTAAAAAATAATCAATCTGAGATCTTTTGAAATTTTTTTCAC
AATTTTGAGCATGGTGACATCTCTGTGATAATAAGGTGCCATAAATATTG
ACCCATTTTAAGCACAATTAATTTTTCGTGTCAAATATATCATTGTCTAC
TCAATGCCTAGGATAAAATAAGCCCAACTGGTTTTGATAGGGTTAAATCG
ACACCCCTTTAGCCCGCCTAGCTTGATTTTTGAGGTCAAATTCATTCCTT
CGTATATAGGATTGGACCTGAATGTCAAATATTATGCAGTGTTATTTATT
CAAGTCTACCCTATCAGGAGAAAATTTGTCGGTGAAAATAATTGCCGGCA
AAATCTTTTAACACGGGTCAATATTTTCGTCACTTTTTACCGACAAATAG
TTTTTGACGACGATATTTTTACCAGAGTAAACGTCTTTTTGATAGGAAAA
GTTAGAAAAATTCATAAAGCCATTTTGTCATAGAGTGTGTCGAAAAAAAT
CATCATCTCAAAAAATGTTAAATAGTTTTTTCGTTTTTTTTTGTTCAGAG
GACCGCAGTCGTTTCTTAAGGTTTGTAACCGGACGAAGACGGTTACCAAC
ACCCCTGTACATTACAAGGAGTAAACTGTAAGTAACTGCAATTAAAATCG
TACTGTTTAATAAAAATAGGCATTCTCTACAAAATTTTGAAACCGGAAAG
TAGAGTTTTATCTTTTTGTTTTCAGTATTAACATTAGCCTTATAAGAACA
TCTCAAATAAATAACGAAATAAGAATCTCGATGTGGGTACTCCTTTTCCT
TTGAACTCCGATCAAAGATATCTCCAATCAAAGATTTCGGATATAACTTA
ACTTAGTCCATGGTTATGAATAGAGGAAGGTTAGTGTTATAGTAACCAGG
GGCCTTTTTTAGGCCTGCTGACCAAGCCGTTCTATGGCACGCAAAAAAAT
TAAAATTCCCCGGGCTAAAAATTCAATTCGCCGCCTCAAGTACATATTTA
CGCTAATCAATACACTGCGCTTGCTAAGGATTTGCCGGCCTAGAATCTAG
AAATCGCTGGAGTTAATTTTACATTCGCCAGCCAATCACAAGCAAGGCGA
AACCCCTGCTGAGAGTACCGTAATACTTTTTCTAATTTCTTTCATTCAGA
ACAACTCCAGCGAACTCTTTGCCGGAATCAGCCACTTGTTCACACACTCT
TTTCCTTCCAACTTATACCAGG

Coding sequence (CDS) from alignment at sc0000072:711733..714354-

>TCONS_00006972 ID=TCONS_00006972|Name=TCONS_00006972|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000072:711733..714354- (Clytia hemisphaerica)
AACAACTCCAGCGAACTCTTTGCCGGAATCAGCCACTTGTTCACACACTC
TTTTCCTTCCAACTTATACCAGGAGGACCGCAGTCGTTTCTTAAGGTTTG
TAACCGGACGAAGACGGTTACCAACACCCCTGTACATTACAAGGAGTAAA
CTCACATTACGAAGATTTTGAGGATGAAAATGACACAACTATCAAATATT
TATGGCAAGCTATCGAAAAATTCACAAACGGTCAACGCCATGCGATGCGG
TCTAGAGAAGGTCGTACCGAAAGCTGTTCTGACGTTGATGACGTGGCAAG
AGCTTGAACATCGTGTTTGCGGTGAGCCTGAAATAACGGTTGAAGCTCTC
AAGAAATCAGACATTATCGAACGGTCGTGTGGTAGCGCTGAAGGAGAAAG
GAGAAACAGAGTACGTCAAATTCGAAGACATCAAAGAGTTCTTGTCGTTG
GCTGTCACTAAGCGGTTGAATGAGTTTAACGAGCAGAACAACTCCAGCGA
ACTCTTTGCCGGAATCAGCCACTTGTTCACACACTCTTTTCCTTCCAACT
TATACCAGGAGGACCGCAGTCGTTTCTTAAGGTTTGTAACCGGACGAAGA
CGGTTACCAACACCCCTGTACATTACAAGGAGTAAACTCACATTACGAAG
ATTTTGAGGATGAAAATGACACAACTATCAAATATTTATGGCAAGCTATC
GAAAAATTCACAAACGGTCAACGCCATGCGATGCGGTCTAGAGAAGGTCG
TACCGAAAGCTGTTCTGACGTTGATGACGTGGCAAGAGCTTGAACATCGT
GTTTGCGGTGAGCCTGAAATAACGGTTGAAGCTCTCAAGAAATCAGACAT
TATCGAACGGTCGTGTGGTAGCGCTGAAGGAGAAAGGAGAAACAGAGTAC
GTCAAATTCGAAGACATCAAAGAGTTCTTGTCGTTGGCTGTCACTAAGCG
GTTGAATGAGTTTAACGAGCAGAACAACTCCAGCGAACTCTTTGCCGGAA
TCAGCCACTTGTTCACACACTCTTTTCCTTCCAACTTATACCAGGAGGAC
CGCAGTCGTTTCTTAAGGTTTGTAACCGGACGAAGACGGTTACCAACACC
CCTGTACATTACAAGGAGTAAACTCACATTACGAAGATTTTGAGGATGAA
AATGACACAACTATCAAATATTTATGGCAAGCTATCGAAAAATTCACAAA
CGGTCAACGCCATGCGATGCGGTCTAGAGAAGGTCGTACCGAAAGCTGTT
CTGACGTTGATGACGTGGCAAGAGCTTGAACATCGTGTTTGCGGTGAGCC
TGAAATAACGGTTGAAGCTCTCAAGAAATCAGACATTATCGAACGGTCGT
GTGGTAGCGCTGAAGGAGAAAGGAGAAACAGAGTACGTCAAATTCGAAGA
CATCAAAGAGTTCTTGTCGTTGGCTGTCACTAAGCGGTTGAATGAGTTTA
ACGAGCAGAACAACTCCAGCGAACTCTTTGCCGGAATCAGCCACTTGTTC
ACACACTCTTTTCCTTCCAACTTATACCAGGAGGACCGCAGTCGTTTCTT
AAGGTTTGTAACCGGACGAAGACGGTTACCAACACCCCTGTACATTACAA
GGAGTAAACTCACATTACGAAGATTTTGAGGATGAAAATGACACAACTAT
CAAATATTTATGGCAAGCTATCGAAAAATTCACAAACGGTCAACGCCATG
CGATGCGGTCTAGAGAAGGTCGTACCGAAAGCTGTTCTGACGTTGATGAC
GTGGCAAGAGCTTGAACATCGTGTTTGCGGTGAGCCTGAAATAACGGTTG
AAGCTCTCAAGAAATCAGACATTATCGAACGGTCGTGTGGTAGCGCTGAA
GGAGAAAGGAGAAACAGAGTACGTCAAATTCGAAGACATCAAAGAGTTCT
TGTCGTTGGCTGTCACTAAGCGGTTGAATGAGTTTAACGAGCAGAACAAC
TCCAGCGAACTCTTTGCCGGAATCAGCCACTTGTTCACACACTCTTTTCC
TTCCAACTTATACCAGGAGGACCGCAGTCGTTTCTTAAGGTTTGTAACCG
GACGAAGACGGTTACCAACACCCCTGTACATTACAAGGAGTAAACTCACA
TTACGAAGATTTTGAGGATGAAAATGACACAACTATCAAATATTTATGGC
AAGCTATCGAAAAATTCACAAACGGTCAACGCCATGCGATGCGGTCTAGA
GAAGGTCGTACCGAAAGCTGTTCTGACGTTGATGACGTGGCAAGAGCTTG
AACATCGTGTTTGCGGTGAGCCTGAAATAACGGTTGAAGCTCTCAAGAAA
TCAGACATTATCGAACGGTCGTGTGGTAGCGCTGAAGGAGAAAGGAGAAA
CAGAGTACGTCAAATTCGAAGACATCAAAGAGTTCTTGTCGTTGGCTGTC
ACTAAGCGGTTGAATGAGTTTAACGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003893XLOC_003893Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006972-proteinTCONS_00006972-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006972-exon-sc0000072-1575043694:714229..714354TCONS_00006972-exon-sc0000072-1575043694:714229..714354Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1575043694:713598..713727TCONS_00006972-exon-sc0000072-1575043694:713598..713727Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1575043694:713019..713096TCONS_00006972-exon-sc0000072-1575043694:713019..713096Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1575043694:712328..712406TCONS_00006972-exon-sc0000072-1575043694:712328..712406Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1575043694:711733..711805TCONS_00006972-exon-sc0000072-1575043694:711733..711805Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1510915933:714229..714354TCONS_00006972-exon-sc0000072-1510915933:714229..714354Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1510915933:713598..713727TCONS_00006972-exon-sc0000072-1510915933:713598..713727Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1510915933:713019..713096TCONS_00006972-exon-sc0000072-1510915933:713019..713096Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1510915933:712328..712406TCONS_00006972-exon-sc0000072-1510915933:712328..712406Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1510915933:711733..711805TCONS_00006972-exon-sc0000072-1510915933:711733..711805Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1491911889:714229..714354TCONS_00006972-exon-sc0000072-1491911889:714229..714354Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1491911889:713598..713727TCONS_00006972-exon-sc0000072-1491911889:713598..713727Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1491911889:713019..713096TCONS_00006972-exon-sc0000072-1491911889:713019..713096Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1491911889:712328..712406TCONS_00006972-exon-sc0000072-1491911889:712328..712406Clytia hemisphaericaexon
TCONS_00006972-exon-sc0000072-1491911889:711733..711805TCONS_00006972-exon-sc0000072-1491911889:711733..711805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:711733..714354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.6846	62.4484	42.345	34.9016	16.9267	16.5149	28.3224	26.6692	24.0682	29.0103	24.0057	25.8458	30.2392	33.9691	32	33.4043	47.2087	44.2483	33.0845	37.0426	30.0916	31.8921	35.0977	34.7126	68.4811	66.6404	14.7522	13.3074	17.0589	20.4218
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
[Close]
BLAST of TCONS_00006972 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 9.219e-50
Identity = 88/162 (54.32%), Postives = 111/162 (68.52%), Query Frame = 1 
Query:    1 TLSNGRVVALKEKGETEYVKFEDIKEFLSLAVTKRLNEFNEQVNAMRCGLEKVVPKAVLTLMTWQELEHRVCGEPEITVEALKKSAHYEDFEDENDTTIKYLWQAIEKFTNEDRSRFLRFVTGRRRLPTPLYITRSKLT-TPANSLPESATCSHTLFLPTYT 483
             LS+ +VV L   G    V + D   F+ L    RL E  EQV AM+ GL KVVP+AVL L+TWQELE +VCG+PE+TV+AL+K   +EDFE  +D+ ++Y W+A+  FTNEDRSRFLRFVTGR RLP  +YI   KL     ++LPES+TCS TLFLP Y 
Sbjct:  673 VLSDQQVVELIPGGAGIVVGYGDRSRFIQLVQKARLEESKEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFEDFE-PSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYIYPDKLGYETTDALPESSTCSSTLFLPHYA 833
The following BLAST results are available for this feature:
BLAST of TCONS_00006972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HECD39.219e-5054.32E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens... [more]
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