TCONS_00006970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006970
Unique NameTCONS_00006970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006970 ID=TCONS_00006970|Name=TCONS_00006970|organism=Clytia hemisphaerica|type=transcript|length=354bp
TACAAGGAAAAAAAGGTTAACGGCACCACGAGCATCATGGAGCACCACAT
GGAACAAAATTATCAGAAGCTCAGAAGctcttttttattgaatttaacat
tttcttagAGGATTTATTACGTGaGTCAGTTGGAGGACACGGAACCAAAC
AATCAGTTCAGACTGCTCCTATCCAATAGACTGATGTATGGCCTAAATGA
CTATTGCTGTTCCTTCCGTGCACAATCGCTTTGATCGGTGAATTGTataa
tcttcatttttggacctaccccggtgggctgtaggtcctataaattaacc
tctgttcgtccgttcgttcgtccgttcgttactagcttttctcgggattg
gcNN
Run BLAST on NCBI

transcript from alignment at sc0000072:656454..664053-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006970 ID=TCONS_00006970|Name=TCONS_00006970|organism=Clytia hemisphaerica|type=transcript|length=7600bp|location=Sequence derived from alignment at sc0000072:656454..664053- (Clytia hemisphaerica)
TACAAGGAAAAAAAGGTTAACGGCACCACGAGCATCATGGAGCACCACAT
GGAACAAAATTATCAGAAGCTCAGAAGCTCTTTTTTATTGAATTTAACAT
TTTCTTAGAGGATTTATTACGTGGTAAGAGTGTTTACAAATCGGATTTCC
GAGGAACTTTGCCACTTTGCTTTACAGCTTTTTTTCTGTTTCCTTTAGGC
AATTTTTATGCCAGACGTCCGCGCTCGATAGGATCGATCATCGGAACAGC
TCGACAATCCGGATAGGGGAGATCAATAGAGGATCGATACTCAAGATTTT
TTTAAGCTTACGATTAGTTATCGATTATTTATCGATCTATCATCGATCTT
TTATCGATCTTATCGACCCTATCGACTCATACTTGATTAACGATCGATAA
CAAATCGATTAGCGATCGATTAACGATTGATGAGGAATTGGTGGTATACT
CGATACACCTTTCCCGTAATTCAAATTTCTCAGAAATGGCCCGGGAAAAT
GTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCAAAAACGGGTTTG
TTTACCTCCAGAGACCAAACGGTGGAGAGCATCAAAATAATGCGCGCGCA
TTAGTTTTACGAATTACGGGAAAGGTGTATTGAAATACTAGCTCGATAAT
GGATCGATACTCAAGACTTTTTAATGGCTGAATCTTCCATCGATCTCCTA
TCCGGATCGTTAAGTAATCCATCGATGACATATCGATCCGTCATCGAGCC
GTTCCGATGATCGATCCTATCGAGCCCGGACGTCTGGTTTATGATGCTTA
TTCGTTTCTTCTGCCAATATCCAGAGCCAGACTCGCTTACTTGATTTATA
TTCAATCGATAACTTACTAATCCAGTGCACAGTGCAGAAGGCTCATAAAT
TGATAAATTCGACCATCGATCTAACTCAATTCTCACTCTTATCATCTATC
AAACTAGAAGTTCAGTAAACATTGCAATCCTTTCAATTAAAAACAGCCCA
ATTTTAAGCAGTTTTACACAACACACGAAACGAGTGTAACTTTCTCGTGT
CCAGCATTAAAATTTTACAACTTTATTCTACTAAAAAATTCCTTGCATGT
AAAATGTTGTGATTTGGGCATCTTTGTTGGCTGTGTTTAGACCAACTGGC
ATTTGTAATTTGGATGAGGGATTCGATTTTAATAGCCTTTCCATTGTATT
TTCTGTCATGGCATTTAAGGAATCGTCTTTTTAGAGTCATTACTGAAAAG
GTGATTCCCTCAAGTTCAACTTTGACAGATCAAACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTATGG
CAAATCTTGCAAATTTTACAATCTATAGAAAAAACTGAATAAAAAACGTG
CAAATACTTTAAAAAATCAAAAATGTCATTTTTTCTCTTTGTTTTGACAA
ACCGAACAATTGCGCGGAACAATAGAATTCAAAAGAATACTGCAAGCAAT
TACAAATGCCAGGCTGGTCTAAACGCAGCCGTTGAAAGCATGCTAATTAG
TTTTTTAGTGATTACTACATTGTTAAAGTTTTCTTTTCAAATATAAGTAA
TAACACTTCACATTTCTCATCTTATATTAACAATCTGTGACGTGATAGGG
AGAGTGCAATTTAGTGATTGATTAATATTTTTGGTATGTATTTATTTATG
TTTGATTTTTTATTTCAAAGACCAGCCTACAGCTATGTCGAAATAGACCT
TTTTTAACGAGGCAGCCATGTTGAATAATTATGTATATACTCCAGCATAA
AAACAATGATACAGCAACGCATAATTACTGTTGTATCATGCATATTTTAA
AAATTATGCATGGCTGTATCATTGTTTTTATGCTGGAGTACATAATTATT
CAACATGGCTGCCTCTTTAAAAAAAGGTCTATAAGAAGATGCATGTCAAT
ATTAGACGATTCTACGGTACCGTCTTACCGTAACTGCTCTAACTTGGGTT
GGTCGAAACATGGAACTGTTGATAATCTGGCCTGTATTTTCACTTACTGT
TAAATCTCTTTGATGACAAATTTGTTTTGATCCTTTTTAACTCTTTTTTT
CATTCAAAATGACCGGACGCTGATTTGAGAATTAGAGAACGCCTGCCGCT
TAACCATCTATCGCCCGATGGAATTAACAAATAATGAGTGTGTAATTTGC
CGCACGAGTGACGTCAAACACTCCAGGGCAAAATTATTTTAAAGCGAACC
AAAAAGTGCATCGGGGAGCTGAAAATTTTTTTTCAGTAAACATTTTCAAA
TTTATATGTATCATTTCTCATAGTATCTTAAACTCATTTGCAGTTGTTTT
AGAGCTACAGCACTTCAGAAACTTGATTTTGCCATTTTTCAGGCTAAAAA
GCCTTGAAATTAAAGCTTTTTAGCCTAAAAAACAGCCACAGCCATATCAA
AAATAATACAATGAATGCTGCAGTTTTAGTTACCTTAAAGAAATTTTCGC
GGAAGAAATTTTCGCGGAATTTAATTTCACGAATTTGGGCGTAATTCGCG
AAATTAAATTCCGCGAAATTCGATTTTTTAGAGGAAGAAGACGGCGATGA
AGTTTAATCATGAGTTATCATAGAAACATTCATCTTTGATGTTATTATTT
TGTTTTTAAAGTTTGTTAATGTGACTGAATCGTCTTGAATGTCGATGAAA
ATTATGAAAAACATTTTCTCTGTTAAAAATCTTTTTTTGAAATTTCTCAA
TCGCGAAATTAAATTCCGTGAAACTTTTGAAATCGGTTCATTCGCGAAAT
TAAATTCCGCGAAATTTGCCATTTTGAAACTCTAATTCTCGAAATTAAAT
TCCGCGAAAATTTCTTCTCGCGAAAGTTTCTTCCCTTAAGGTATTCAAAA
TCCAACATAGGCCAACAATTGATCAAGAAAACTCATTTATAGCATGTTTG
GCCTTCCCTGGATTGAACGGTTGAGGATTTTATTTTCCAAAAATTTGGTT
ACGGAATGACGGAAAAATTAAAAATGCTGTAAAGTTTTAAGGAAACATTT
TTAGAGTAAAATATTTGGCAAGTTTCTACTTCTTACTGAGTACTTTCAAA
CCAGGCATAGATTAATTGCCATTGGGGGAAGACTGGTTTTTAATTGAGAA
ATCATTTTTGGTTACGGAATGACAGAAAATTATCTTACTTTACTGAAATA
AAAATTATGAAATTTTTTTTAAGCTGACACAGTAACTTTGTATCAAAATC
TAAGCATTTGATCCATCTTGAAAACCTTTCCATTAACCCTATATAGGGTT
CTAAAGTTAAATAAGATTTTTTCATATCATGTGTACCGCATTCAGATAAA
TTTAAAAAATTGGTTGAGTGTTACCAAAAATCTTTTTGATTTTCTCAAAG
TGTTATCGTTGCTATGGCTAAAAATCATGACTTTGATAGCATAATCATCA
GTCAGTGTCAATTTATTAACCACTTTAACAATGCAAATTTTTGGGTGATA
CTCTGTTTCATGGAAAAAATTGGCAGTTTTTGAGTTTTAAAATGCCATAA
CTTTAGTTTTGCTTGTGCTACAGACTTGTATGAGCTCTCATTTTTCAGTA
TTTTTTATTGTGCATCCTCTGAAATTAAAATCATGCAATGACAATCTCCA
CTTTATGCACAATATCCTTTTGAAGTCAAGGTGGTCTCTGGTTCCCTTTA
AAATAATTTTGCCCTCCATCATTTTGCCACTAACAGTTAGTCACACTAGT
GTCCCGCCAAAATGCATATCAAAGATTAATGCTGCGAAAGCGCTATATGG
TTTACTTGACTCTCAAGCAAAAAAATGCGCCGGAAAACTTCTAAAGGGAT
TCATGAAAAAATAACCCGGCGCTTTTTAATGAAATTAACATTTTCAAAAA
CTTCGAGAAATTGCCTAAAATTTGAGCCATAGATGAAAAAATTTGAGCCA
AGCCAACCTTGAAAACTAATTTGAAGATCAACTTCCCAAGAAAAAGATCT
ACGGGGGAGGCGGAACCCACCTAGATCCGCGCACCGCCGGATAGGCTATC
CCCCGGAAATTTTGCCGGACATCAAACACATTTACATGTGCGGAATTGTT
TTTACTTTAGCGTATAAACAAGGCTTTAAAAATTGAAGCGCTGTCTCGGG
AATTGAATTGACAAATTTTGGTTGGTTGATTTTGGCAGCTGTTTCCAACT
TTCCAGTTTTAATTAATATTGTCTTGCGAACTTGATTCAGGTAACTCTCA
TCCTTGTTGTTGAAATGTATCCTGTAGATGACTGATGTTGTTTTTTCTGA
AAGCTTAATTTCCTAGTGTGACTAACTGACTAATCTGTTCTTCTTCGTTC
AAGACACTTGCGTGTGTTCCACTACGGATTTTTTTCATATTGCGATTTAA
AAGCCTACTCGGTACAAAAGAGAAATCGTGTATTTTTTGAATACGCCGTT
CATTAACTCATATCAAATGACTCTGGAGGTTCGGTGAAATGGTGGCTGTC
CCATTTTTTGTCAGATAGTCCTAAGTTGGAGCAGTTAACGGTAGCTTTTA
ATCCCATTAATTTTAGTGCGCCTTTTATTTTCATGCCTCTAATTTTTACG
CCTTTAATTTTTGCACACCCCTTTAAAAAGGGTATTTGCACATCTTGTGA
TTTTAGCCACATTTTGCGGGCGTTTTAGATGAAGAATGCAGGCACAAGTA
ACAACAGGGAAAAAAGCCAGCTTTGGTGGTCATGGTCTTAAAGCTTTTTT
AAACCGTAGGAAACGTTTTAAAACTCTTAAAATTGGCTGAAATATTAAGG
AATCAAACCCAATAAGAGTGAAAGATCGAAATTTGGTCAAAGTTGGTCAA
ATTAGTCCCTCTAAGGGTCGTAAAATTCACAAAACTTTCCTTGGTTTTCT
CTTTTTTAGTCCCGGTAAGGGTCCAATCCAAAGTTCGAAAGTCGGGCGGC
ACCCCACCCCCCCTGTCAGCTCGCAACCCTATTACATAAAAATAATGATT
TTTGGAAGTTGAGGTGATTCTTTTGTTAGAAAATAATAGATGATGTGGAA
GACAGTGTCAAAACCGGTCAGATTTTTGCTGTATGAAACACCTTTCTGTT
AACCTAGCACAAGAACAAGTGGCTCAAGAACAAAAAAATTTTGCATGCAA
GTCACACCTAAGAAAGAAAACTGGAAAGAAACTCATTAAATCCCTCAAAA
TGAGCCTACTACCCCTTAAACTGTGTTTTGTATGGTCTTGGGTAAAAAAA
GTGACAAACACCCTAAGTTGAAGAACCACAGAGAATATTATCACAAGAGG
AGATAAAAAATCTCAAACAAAGATTTAATTTTTCCAACTCAAAATAAAGC
ATTTTTCTCAAATATTTAGAGTCAGTTGGAGGACACGGAACCAAACAATC
AGTTCAGACTGCTCCTATCCAATAGACTGATGTATGGCCTAAATGACTAT
TGCTGTTCCTTCCGTGCACAATCGCTTTGATCGGTGAATTGTATAATCTT
CATTTTTGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTCTG
TTCGTCCGTTCGTTCGTCCGTTCGTTACTAGCTTTTCTCGGGATTGGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003891XLOC_003891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006970-exon-sc0000072-1575043694:663931..664053TCONS_00006970-exon-sc0000072-1575043694:663931..664053Clytia hemisphaericaexon
TCONS_00006970-exon-sc0000072-1575043694:656454..656684TCONS_00006970-exon-sc0000072-1575043694:656454..656684Clytia hemisphaericaexon
TCONS_00006970-exon-sc0000072-1510915933:663931..664053TCONS_00006970-exon-sc0000072-1510915933:663931..664053Clytia hemisphaericaexon
TCONS_00006970-exon-sc0000072-1510915933:656454..656684TCONS_00006970-exon-sc0000072-1510915933:656454..656684Clytia hemisphaericaexon
TCONS_00006970-exon-sc0000072-1491911889:663931..664053TCONS_00006970-exon-sc0000072-1491911889:663931..664053Clytia hemisphaericaexon
TCONS_00006970-exon-sc0000072-1491911889:656454..656684TCONS_00006970-exon-sc0000072-1491911889:656454..656684Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:656454..664053 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7766	18.8013	10.719	11.2984	74.2818	61.845	52.9295	49.9471	30.8213	31.9967	19.7477	35.1951	8.05295	8.86044	5.35164	6.81636	9.17198	10.1087	4.66272	3.04056	5.90861	8.46503	10.3615	9.53678	22.3084	31.4128	13.664	14.8931	4.42186	6.23739
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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