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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006955 ID=TCONS_00006955|Name=TCONS_00006955|organism=Clytia hemisphaerica|type=transcript|length=2438bpRun BLAST on NCBI protein sequence of TCONS_00006955-protein >TCONS_00006955-protein ID=TCONS_00006955-protein|Name=TCONS_00006955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp MGHRFDSKEINFFRKNILKQYDTSQRSLPWRTIAKECQDENKRAYSVWVSRun BLAST on NCBI transcript from alignment at sc0000072:497800..532821- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006955 ID=TCONS_00006955|Name=TCONS_00006955|organism=Clytia hemisphaerica|type=transcript|length=35022bp|location=Sequence derived from alignment at sc0000072:497800..532821- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:497800..532821- >TCONS_00006955 ID=TCONS_00006955|Name=TCONS_00006955|organism=Clytia hemisphaerica|type=CDS|length=25002bp|location=Sequence derived from alignment at sc0000072:497800..532821- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006955 vs. Swiss-Prot (Human)
Match: MUTYH (Adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1 SV=1) HSP 1 Score: 400.979 bits (1029), Expect = 3.275e-129 Identity = 209/470 (44.47%), Postives = 292/470 (62.13%), Query Frame = 3
Query: 180 HRF-DSKEINFFRKNILKQYDTSQRSLPWRTIAKECQDENKRAYSVWVSEIMLQQTQVATVIDYYNRWIKKWPTVEDLAEATIEEVNTQWSGLGYYSRGKRLHQGAQEVMNKLNGQIPRTSTALQKKLPGVGPYTAGAIASIAYNEPCGVVDGNVIRVLCRLRTIGANSNSNQVQELLWELAKEVVDPDRPGDFNQALMEFGALTCTPKAPKCGDCPLKDICNAYXXXXXXXXXXXXXXXXIYTCPDIED----AGACCYCLPSSVPWEPSLGVMNYPRKEKKKPPASEQFATIILKQNG----KYLLTKRPETGLLAGLWEFPSDQIQPKXXXXXXXXXXXXXXAQLRQKCRDYLKTTFCVEIAAKDLIPCGQVVHVFSHRRHTYHVFKADLKKKDVGINESEKMRWIAKDGFDDIGITTAIRKILALSEG---STQLKGKRPNTGNNDAAKRTLTPNKKQKRMDEFFK 1553
H F D E+ FR ++L YD +R LPWR A++ D ++RAY+VWVSE+MLQQTQVATVI+YY W++KWPT++DLA A++EEVN W+GLGYYSRG+RL +GA++V+ +L G +PRT+ LQ+ LPGVG YTAGAIASIA+ + GVVDGNV RVLCR+R IGA+ +S V + LW LA+++VDP RPGDFNQA ME GA CTP+ P C CP++ +C A Q E+++ + PD+E+ G C CLP S PW+ +LGV+N+PRK +KPP E AT +L+Q G + LL +RP +GLLAGLWEFPS +P QL++K + + A L G+VVH FSH + TY V+ L+ + RW+ ++ F ++TA++K+ + +G T + KR + + K+ P Q+ +D FF+
Sbjct: 82 HLFRDVAEVTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRA---RQRVEQEQLLASGSLSGSPDVEECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSE--------------QLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQGQQPGTCMGSKRSQVSSPCSRKK---PRMGQQVLDNFFR 531 The following BLAST results are available for this feature:
BLAST of TCONS_00006955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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