TCONS_00006917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006917
Unique NameTCONS_00006917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006917 ID=TCONS_00006917|Name=TCONS_00006917|organism=Clytia hemisphaerica|type=transcript|length=1000bp
ACTTAAAGGTTTTTGCAGGCTTAAAATCTTAAACCATCTGATTTTCTCTT
CAATCAACTTGGCAAGTGACGGATTCTGATTTTAATTCTCCTAATTTTCA
CATTCAagagaaacaaaaaaacaaaacataaaaacccTCAAAATGGCAAC
AACAGAAGAAGTAACACCTAACACTACAACCACCTTGATCCTTGGAGCTT
CAGGAAATACTGGTCGACGCCTCGTAGAACAATTATTGGCTGATAAACAA
AATGTGAAAGCTATTGTCAGGTCTAAAGAAAGATTCCAAGAAATTATCCC
TGACCATGAACAATTACAAGTGATCGAATCTAcagCACTCGAAATGACAG
ACGCAGATTTCAAAGAAGCCGTCACCGGTTGTAACGCCGTTGTTAGTTGT
CTAGGTCACAACCTCACGTTAAAAGGGGTATACGGAAAACCCAGGGCACT
TGTTACAGACTcactgaaaaaagtttgtacgACAATACAAGAATTGGATT
TGGAGGAACCGGTCAAAGTTGTTCTAATGGGATCAAATGGAGTTGCTAAT
CCAAAAGGTACTGATAACACACGCCCATTAAGAGAACGTTTTCTTCTCTC
CGCCGTAAGGGCGTTAACGCCTCCTCACAGAGACAACGAGGCGGCTGCTG
CATACTTGAGTAAAGATATTGGAGAAGAGGCGTCAAATATTGAATGGGTG
GTGGTACGCCCTGATGGATTGATCGAAGGTGATGTCAGTAAATATGAGGT
CTTCGATAAACCATTACCGGGGTTATTTGGAGGTGGTGAAACAACTCGAG
CCAATGTTGCGCATTTCATGAAAACGTTGATTCTGAATGATGACATGTGG
AAAAAATGGTTGTACCAAATGCCGGTACCGGAAAATATTAAAGAGGTGAA
AAAAGGAGAAGAATGAAATATTAAGCTGTAAATGGTATAAAATAGACAAC
GTGTACATATTTGAGAAAGTTGTTTTGTCTTTAGAATTTCTTGGTAcgag
Run BLAST on NCBI

protein sequence of TCONS_00006917-protein

>TCONS_00006917-protein ID=TCONS_00006917-protein|Name=TCONS_00006917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MATTEEVTPNTTTTLILGASGNTGRRLVEQLLADKQNVKAIVRSKERFQE
IIPDHEQLQVIESTALEMTDADFKEAVTGCNAVVSCLGHNLTLKGVYGKP
RALVTDSLKKVCTTIQELDLEEPVKVVLMGSNGVANPKGTDNTRPLRERF
LLSAVRALTPPHRDNEAAAAYLSKDIGEEASNIEWVVVRPDGLIEGDVSK
YEVFDKPLPGLFGGGETTRANVAHFMKTLILNDDMWKKWLYQMPVPENIK
EVKKGEE
Run BLAST on NCBI

transcript from alignment at sc0000072:57507..60293-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006917 ID=TCONS_00006917|Name=TCONS_00006917|organism=Clytia hemisphaerica|type=transcript|length=2787bp|location=Sequence derived from alignment at sc0000072:57507..60293- (Clytia hemisphaerica)
ACTTAAAGGTTTTTGCAGGCTTAAAATCTTAAACCATCTGATTTTCTCTT
CAATCAACTTGGCAAGTGACGGATTCTGATTTTAATTCTCCTAATTTTCA
CATTCAAGAGAAACAAAAAAACAAAACATAAAAACCCTCAAAATGGCAAC
AACAGAAGAAGTAACACCTAACACTACAACCACCTTGATCCTTGGAGCTT
CAGGAAATACTGGTCGACGCCTCGTAGAACAATTATTGGCTGATAAACAA
AATGTGAAAGCTATTGTCAGGTCTAAAGAAAGATTCCAAGAAATTATCCC
TGACCATGAACAATTACAAGTGATCGAATCTACAGGTTTTTTATATTTTG
TGGTGGTCACCTCTTCTTTCTTGGTATTCTCCAAACCTTTGAATTTCCTC
AAATTATCGTCTTGCTTGTCCACCATTCGTATATTGTTTATTCTGGATGC
ACATTTACCCGAAATTTTATCTGCAACCAAAATTCAAATCTAATTTTTTA
CACATTTATTTACCGAAATTAGTGCTTTAAACATCGAATTACAAGATCCA
TTTTCGAGCTAGTGAAGGAAACCATTTCTTTTGAACAGTTTAGTCGGGTG
AAAGTGGAAATTTTTGTCGAGGAAAAGTGACGAATTTGACTGTCACCTTC
TCTATACTCACCTTTTAGGAAAATATCCTCCTTTCTTTGGTCGTCCGCAA
GAAAGACCCAAAATACGAATAAGGTTTTTGAAATAAGTTTTCTTCCTTTT
CAGCACTCGAAATGACAGACGCAGATTTCAAAGAAGCCGTCACCGGTTGT
AACGCCGTTGTTAGTTGTCTAGGTCACAACCTCACGTTAAAAGGGGTATA
CGGAAAACCCAGGGCACTTGTTACAGACTCACTGAAAAAAGTTTGTACGA
CAATACAAGAATTGGATTTGGAGGAACCGGTCAAAGTTGTTCTAATGGGA
TCAAATGGAGTTGCTAATCCAAAAGGTATAGAGGTTCTCAAATTTGATTA
TCAAAGAAATTACACAGACTTTCCTAGCCTGCAACCTCTCTTTGTGTATT
TAAACCCCAGTTGGCACACAACGTTATTTCAACGTTTATCTAACGTTATA
TGGACGTTGTGTACATTAGATAAACGTTGAAACAATGTTGTTTGCCCCCT
CCGTACATTGCCAGGTCTATGCAGGGTGTACAGTAAATATTAGTAACACC
TAGTAAACTCTCTTTAATTCGCACCATTTTTATTTATAATTCCTGAATTG
AAATTCAGACAAATAAAGACTGGGAAAGGTTTACAAAATACTCCATAAGC
ATAACCTTTCTCTAATTTGGAAAAGAAAGTCAATTGAATATTTAAAAAAC
GAGAGGCAACATATTTATTCCATCTATCATTCCATTTCCCAGGTACTGAT
AACACACGCCCATTAAGAGAACGTTTTCTTCTCTCCGCCGTAAGGGCGTT
AACGCCTCCTCACAGAGACAACGAGGCGGCTGCTGCATACTTGAGTAAAG
ATATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTTGG
CACACAACGTTATTTCAACGTTCATCTAACGTTATATGGACGTTGTGTAC
ATTAGATAAACGTTGAAACAATGTTGTTTGCCCCCTCCGTACATTGCCAG
GTCTATGCAGGGTGTACAGTAAATATTAGTAACACCTAGTAAACTCTCTT
TAATTCGCACCATTTTTATTTATAATTCCTGAATTGAAATTCAGACAAAT
AAAGACTGGGAAAGGTTTACAAAATACTCCATAAGCATAACCTTTCTCTA
ATTTGGAAAAGAAAGTCAATTGAATATTTAAAAAACGAGAGGCAACATAT
TTATTCCATCTATCATTCCATTTCCCAGGTACTGATAACACACGCCCATT
AAGAGAACGTTTTCTTCTCTCCGCCGTAAGGGCGTTAACGCCTCCTCACA
GAGACAACGAGGCGGCTGCTGCATACTTGAGTAAAGATATTGGAGAAGAG
GCGTCAAATATTGAATGGGTGGTGGTACGCCCTGATGGATTGATCGAAGG
TGATGTCAGTAAATATGAGGTAGGATTAGATTCTTGATAATGACCTTCGT
AAAATTAACTGTTTTGAATCAATACTTTTAATATACCCGAAACTCGAATC
TAGTCTCTCTAGGAGGGGTCTATCTAACAAATCCTGCATTACAGTACTAA
AAGTTGACAAAAAGAATGACAAATTTCATAAAAAACGACAAATTTCATAT
TTCTGAAAACTTTTTAATTTTCCAAGCCTCCGAAGGGTAGATAAGATAGC
TAGGTATCTAAGGTAGATAGCCCATTAATCTAGTAATTTTATTAGACAGT
TTTTCGATTTTTTTTCACGGGGTCCACGGCCAGGCGGCTCGAATATCTAT
GAACTGAATGTTAGAAAAAATCTAGGCTTCTGCTCATCCTCTAGCGGAAA
GAGTATAGGAAGAGTATATCTTTAGAGGTCTGTGATTTAAGACTAGAAGA
AAGTCATAATTAAACATTTCTTCATTCTCTTTTAGGTCTTCGATAAACCA
TTACCGGGGTTATTTGGAGGTGGTGAAACAACTCGAGCCAATGTTGCGCA
TTTCATGAAAACGTTGATTCTGAATGATGACATGTGGAAAAAATGGTTGT
ACCAAATGCCGGTACCGGAAAATATTAAAGAGGTGAAAAAAGGAGAAGAA
TGAAATATTAAGCTGTAAATGGTATAAAATAGACAACGTGTACATATTTG
AGAAAGTTGTTTTGTCTTTAGAATTTCTTGGTACGAG

Coding sequence (CDS) from alignment at sc0000072:57507..60293-

>TCONS_00006917 ID=TCONS_00006917|Name=TCONS_00006917|organism=Clytia hemisphaerica|type=CDS|length=3096bp|location=Sequence derived from alignment at sc0000072:57507..60293- (Clytia hemisphaerica)
GTCTTCGATAAACCATTACCGGGGTTATTTGGAGGTGGTGAAACAACTCG
AGCCAATGTTGCGCATTTCATGAAAACGTTGATTCTGAATGATGACATGT
GGAAAAAATGGTTGTACCAAATGCCGGTACCGGAAAATATTAAAGAGGTG
AAAAAAGGAGAAGAATGAGTACTGATAACACACGCCCATTAAGAGAACGT
TTTCTTCTCTCCGCCGTAAGGGCGTTAACGCCTCCTCACAGAGACAACGA
GGCGGCTGCTGCATACTTGAGTAAAGATATTGGAGAAGAGGCGTCAAATA
TTGAATGGGTGGTGGTACGCCCTGATGGATTGATCGAAGGTGATGTCAGT
AAATATGAGCACTCGAAATGACAGACGCAGATTTCAAAGAAGCCGTCACC
GGTTGTAACGCCGTTGTTAGTTGTCTAGGTCACAACCTCACGTTAAAAGG
GGTATACGGAAAACCCAGGGCACTTGTTACAGACTCACTGAAAAAAGTTT
GTACGACAATACAAGAATTGGATTTGGAGGAACCGGTCAAAGTTGTTCTA
ATGGGATCAAATGGAGTTGCTAATCCAAAAGATGGCAACAACAGAAGAAG
TAACACCTAACACTACAACCACCTTGATCCTTGGAGCTTCAGGAAATACT
GGTCGACGCCTCGTAGAACAATTATTGGCTGATAAACAAAATGTGAAAGC
TATTGTCAGGTCTAAAGAAAGATTCCAAGAAATTATCCCTGACCATGAAC
AATTACAAGTGATCGAATCTACAGGTCTTCGATAAACCATTACCGGGGTT
ATTTGGAGGTGGTGAAACAACTCGAGCCAATGTTGCGCATTTCATGAAAA
CGTTGATTCTGAATGATGACATGTGGAAAAAATGGTTGTACCAAATGCCG
GTACCGGAAAATATTAAAGAGGTGAAAAAAGGAGAAGAATGAGTACTGAT
AACACACGCCCATTAAGAGAACGTTTTCTTCTCTCCGCCGTAAGGGCGTT
AACGCCTCCTCACAGAGACAACGAGGCGGCTGCTGCATACTTGAGTAAAG
ATATTGGAGAAGAGGCGTCAAATATTGAATGGGTGGTGGTACGCCCTGAT
GGATTGATCGAAGGTGATGTCAGTAAATATGAGCACTCGAAATGACAGAC
GCAGATTTCAAAGAAGCCGTCACCGGTTGTAACGCCGTTGTTAGTTGTCT
AGGTCACAACCTCACGTTAAAAGGGGTATACGGAAAACCCAGGGCACTTG
TTACAGACTCACTGAAAAAAGTTTGTACGACAATACAAGAATTGGATTTG
GAGGAACCGGTCAAAGTTGTTCTAATGGGATCAAATGGAGTTGCTAATCC
AAAAGATGGCAACAACAGAAGAAGTAACACCTAACACTACAACCACCTTG
ATCCTTGGAGCTTCAGGAAATACTGGTCGACGCCTCGTAGAACAATTATT
GGCTGATAAACAAAATGTGAAAGCTATTGTCAGGTCTAAAGAAAGATTCC
AAGAAATTATCCCTGACCATGAACAATTACAAGTGATCGAATCTACAGGT
CTTCGATAAACCATTACCGGGGTTATTTGGAGGTGGTGAAACAACTCGAG
CCAATGTTGCGCATTTCATGAAAACGTTGATTCTGAATGATGACATGTGG
AAAAAATGGTTGTACCAAATGCCGGTACCGGAAAATATTAAAGAGGTGAA
AAAAGGAGAAGAATGAGTACTGATAACACACGCCCATTAAGAGAACGTTT
TCTTCTCTCCGCCGTAAGGGCGTTAACGCCTCCTCACAGAGACAACGAGG
CGGCTGCTGCATACTTGAGTAAAGATATTGGAGAAGAGGCGTCAAATATT
GAATGGGTGGTGGTACGCCCTGATGGATTGATCGAAGGTGATGTCAGTAA
ATATGAGCACTCGAAATGACAGACGCAGATTTCAAAGAAGCCGTCACCGG
TTGTAACGCCGTTGTTAGTTGTCTAGGTCACAACCTCACGTTAAAAGGGG
TATACGGAAAACCCAGGGCACTTGTTACAGACTCACTGAAAAAAGTTTGT
ACGACAATACAAGAATTGGATTTGGAGGAACCGGTCAAAGTTGTTCTAAT
GGGATCAAATGGAGTTGCTAATCCAAAAGATGGCAACAACAGAAGAAGTA
ACACCTAACACTACAACCACCTTGATCCTTGGAGCTTCAGGAAATACTGG
TCGACGCCTCGTAGAACAATTATTGGCTGATAAACAAAATGTGAAAGCTA
TTGTCAGGTCTAAAGAAAGATTCCAAGAAATTATCCCTGACCATGAACAA
TTACAAGTGATCGAATCTACAGGTCTTCGATAAACCATTACCGGGGTTAT
TTGGAGGTGGTGAAACAACTCGAGCCAATGTTGCGCATTTCATGAAAACG
TTGATTCTGAATGATGACATGTGGAAAAAATGGTTGTACCAAATGCCGGT
ACCGGAAAATATTAAAGAGGTGAAAAAAGGAGAAGAATGAGTACTGATAA
CACACGCCCATTAAGAGAACGTTTTCTTCTCTCCGCCGTAAGGGCGTTAA
CGCCTCCTCACAGAGACAACGAGGCGGCTGCTGCATACTTGAGTAAAGAT
ATTGGAGAAGAGGCGTCAAATATTGAATGGGTGGTGGTACGCCCTGATGG
ATTGATCGAAGGTGATGTCAGTAAATATGAGCACTCGAAATGACAGACGC
AGATTTCAAAGAAGCCGTCACCGGTTGTAACGCCGTTGTTAGTTGTCTAG
GTCACAACCTCACGTTAAAAGGGGTATACGGAAAACCCAGGGCACTTGTT
ACAGACTCACTGAAAAAAGTTTGTACGACAATACAAGAATTGGATTTGGA
GGAACCGGTCAAAGTTGTTCTAATGGGATCAAATGGAGTTGCTAATCCAA
AAGATGGCAACAACAGAAGAAGTAACACCTAACACTACAACCACCTTGAT
CCTTGGAGCTTCAGGAAATACTGGTCGACGCCTCGTAGAACAATTATTGG
CTGATAAACAAAATGTGAAAGCTATTGTCAGGTCTAAAGAAAGATTCCAA
GAAATTATCCCTGACCATGAACAATTACAAGTGATCGAATCTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003870XLOC_003870Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006917-exon-sc0000072-1575043694:59959..60293TCONS_00006917-exon-sc0000072-1575043694:59959..60293Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1575043694:59319..59540TCONS_00006917-exon-sc0000072-1575043694:59319..59540Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1575043694:58225..58415TCONS_00006917-exon-sc0000072-1575043694:58225..58415Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1575043694:57507..57758TCONS_00006917-exon-sc0000072-1575043694:57507..57758Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1510915933:59959..60293TCONS_00006917-exon-sc0000072-1510915933:59959..60293Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1510915933:59319..59540TCONS_00006917-exon-sc0000072-1510915933:59319..59540Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1510915933:58225..58415TCONS_00006917-exon-sc0000072-1510915933:58225..58415Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1510915933:57507..57758TCONS_00006917-exon-sc0000072-1510915933:57507..57758Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1491911889:59959..60293TCONS_00006917-exon-sc0000072-1491911889:59959..60293Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1491911889:59319..59540TCONS_00006917-exon-sc0000072-1491911889:59319..59540Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1491911889:58225..58415TCONS_00006917-exon-sc0000072-1491911889:58225..58415Clytia hemisphaericaexon
TCONS_00006917-exon-sc0000072-1491911889:57507..57758TCONS_00006917-exon-sc0000072-1491911889:57507..57758Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006917-proteinTCONS_00006917-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:57507..60293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.9844	35.6013	25.4425	24.8915	7.87846	4.86734	5.32598	6.77601	27.4019	13.3047	43.7997	49.8734	192.576	103.371	23.9453	98.2576	19.9642	40.1297	15.9246	48.0901	3.51258	3.23626	15.3764	13.3248	3.64943	6.79044	1.89344	1.57524	3.41901	4.36191
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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