TCONS_00006916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006916
Unique NameTCONS_00006916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006916 ID=TCONS_00006916|Name=TCONS_00006916|organism=Clytia hemisphaerica|type=transcript|length=1079bp
TGAAAATACCAAGAGAAGTACttcttcaaaattattttcgtcTAGCTCAA
GAATGGCTGAACATGCTATTGCTGAAAAGGTTCAGAGGATCTTACAAAAG
GGGTATGGCGAAATCTTGAAAGGAACAGATCAAGATGGTAGCCAAAGCAG
CGAAGATAAAGAATTAAAGCTCGAATCACGTGACGATAGAGCACGTCAAA
TATGCGCCATTTTGAAATCGAATGTTTTCGAacaatacaaaaataacaac
CAATCAGATTTATCTTTGATTTATGGGAAATATGATGACAGACAACACTC
CCATTTGCTTTCCCCGTTGGAATGGGATCGCTCTCAAGAGGAATGGAAAC
TACCATTTGGATCGAATTTCAAGCGACCGCACTTCATTTTCTACTCACCG
CGCGCACAGAATAAGGAAGAAGCGGAATATCTTATCTTGAATGTAACCGC
ATGTCGAGTACTCAGTGAGGGTCAAAGTTACCTCTATCCAGTCCAACTAC
AATATGATCTTGAAGAAGATGAAATTGCTTTGTTCACCAACAAAATGCGT
ATTGTTGAGTGTGCCCACCTAGCGCACGTTCATGAGCGCGCGGAAGATGA
AATATCCGATCTCGCCCGCCTGTTGTGCCATTATGGAGCACAAGTCAATT
CATCTATTTCTTACCAATCTGTTGTGTTTTTGTATAccaaagatgaaaat
gatttagTGGATTACCTGCAACCAGAACCTCAATTTGGTGATGTCCAAGC
GTACGCGGCGGAAGATGGGAGCAAGAATGCTCACAAAATTCTGTACATCT
AGAAATATCAAATTACATTACATACACTTTTTTCAAGAACATAAGGctga
aattttgccaaaaatgaaCAAAGTCCATATACAAAATACTCAGTATTCAG
AATAAACTAACAAAGcacttataaaaacaaaaatactttaaCAAGAAAAT
TCAGgccgaaaaaaatgtaaaacaagAACACCACAGCCAGAACTTgccga
aaaaaatgtaaaacaagAACACCACAGCCAGAACTTGCCGAATCATGAAG
TAagaatgaaatccaaatttgaTTATGAC
Run BLAST on NCBI

protein sequence of TCONS_00006916-protein

>TCONS_00006916-protein ID=TCONS_00006916-protein|Name=TCONS_00006916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
ENTKRSTSSKLFSSSSRMAEHAIAEKVQRILQKGYGEILKGTDQDGSQSS
EDKELKLESRDDRARQICAILKSNVFEQYKNNNQSDLSLIYGKYDDRQHS
HLLSPLEWDRSQEEWKLPFGSNFKRPHFIFYSPRAQNKEEAEYLILNVTA
CRVLSEGQSYLYPVQLQYDLEEDEIALFTNKMRIVECAHLAHVHERAEDE
ISDLARLLCHYGAQVNSSISYQSVVFLYTKDENDLVDYLQPEPQFGDVQA
YAAEDGSKNAHKILYI
Run BLAST on NCBI

transcript from alignment at sc0000072:50426..52298-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006916 ID=TCONS_00006916|Name=TCONS_00006916|organism=Clytia hemisphaerica|type=transcript|length=1873bp|location=Sequence derived from alignment at sc0000072:50426..52298- (Clytia hemisphaerica)
TGAAAATACCAAGAGAAGTACTTCTTCAAAATTATTTTCGTCTAGCTCAA
GAATGGCTGAACATGCTATTGCTGAAAAGGTTCAGAGGATCTTACAAAAG
GGGTATGGCGAAATCTTGAAAGGAACAGATCAAGATGGTAGCCAAAGCAG
CGAAGATAAAGAATTAAAGCTCGAATCACGTGACGATAGAGCACGTCAAA
TATGCGCCATTTTGAAATCGAATGTTTTCGAACAATACAAAAATAACAAC
CAATCAGATTTATCTTTGATTTATGGGAAATATGATGACAGACAACACTC
CCATTTGCTTTCCCCGTTGGAATGGGATCGCTCTCAAGAGGAATGGAAAC
TACCATTTGGATCGAATTTCAAGCGACCGCACTTCATTTTCTACTCACCG
CGCGCACAGAATAAGGAAGAAGCGGAATATCTTATCTTGAATGTAACCGC
ATGTCGAGTACTCAGTGAGGGTCAAAGTTACCTCTATCCAGTCCAACTAC
AATATGATCTTGAAGAAGATGAAATTGCTTTGTTCACCAACAAAATGCGT
ATTGTTGAGTGTGCCCACCTAGCGCACGTTCATGAGCGCGCGGAAGATGA
AATATCCGATCTCGCCCGCCTGTTGTGCCATTATGGAGCACAAGTCAATT
CATCTATTTCTTACCAATCTGTTGTGTTTTTGTATACCAAAGATGAAAAT
GATTTAGTGGATTACCTGCAACCAGAACCTCAATTTGGTGATGTCCAAGC
GTACGCGGCGGAAGATGGGAGCAAGAATGCTCACAAAATTCTGTACATCT
AGAAATATCAAATTACATTACATACACTTTTTTCAAGAACATAAGGCTGA
AATTTTGCCAAAAATGAACAAAGTCCATATACAAAATACTCAGTATTCAG
AATAAACTAACAAAGCACTTATAAAAACAAAAATACTTTAACAAGAAAAT
TCAGGCCGAAAAAAATGTAAAACAAGAACACCACAGCCAGAACTTGCCGA
ATCATGAAGTAAGAATGAAATCCAAATTTGATTATGACAAGCGATTTATC
ATTACAAACATAAATGTCTTTTTAAAAAAGTTTGTCGCAATGAAAAAAAA
TCATAGATTGTTTTACGTTGTAAATAAACTTTTAAGTGGAATAATTTGAA
TATAAAATATATTAATAAAAAACACGAATATACACCTATACATATAAAAC
TGTTTCTCTAGTCTTTGACAAAAGATAATCCTTATTGGGGAAATTTAGCT
AACCTCGATAAAATTTTAGTCATTTTCCCTTCGTTTCATTTAAGTTGATA
AAGTCTCCGGTACCTTAAGAGAAAAATTTTGGCAGAAAGAAATTTCGAAA
AATTTGGCAAATCGCCTCAAATATTTCGCCAAATTTAGATTTATAGGCCA
CTCGCTAAAATTAATTCTCGCCAATTTAAATTTCTTTTACACTAGTCTCT
ATTTCTCCTAAAAACCTCTTTTTTCATCCTTTTTAAGCTTAAATATTCAA
CAAAAATGAGTCGTTGGCNCACCAAAGATGAAAATGATTTAGTGGATTAC
CTGCAACCAGAACCTCAATTTGGTGATGTCCAAGCGTACGCGGCGGAAGA
TGGGAGCAAGAATGCTCACAAAATTCTGTACATCTAGAAATATCAAATTA
CATTACATACACTTTTTTCAAGAACATAAGGCTGAAATTTTGCCAAAAAT
GAACAAAGTCCATATACAAAATACTCAGTATTCAGAATAAACTAACAAAG
CACTTATAAAAACAAAAATACTTTAACAAGAAAATTCAGGCCGAAAAAAA
TGTAAAACAAGAACACCACAGCCAGAACTTGCCGAATCATGAAGTAAGAA
TGAAATCCAAATTTGATTATGAC

Coding sequence (CDS) from alignment at sc0000072:50426..52298-

>TCONS_00006916 ID=TCONS_00006916|Name=TCONS_00006916|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0000072:50426..52298- (Clytia hemisphaerica)
GAAAATACCAAGAGAAGTACTTCTTCAAAATTATTTTCGTCTAGCTCAAG
AATGGCTGAACATGCTATTGCTGAAAAGGTTCAGAGGATCTTACAAAAGG
GGTATGGCGAAATCTTGAAAGGAACAGATCAAGATGGTAGCCAAAGCAGC
GAAGATAAAGAATTAAAGCTCGAATCACGTGACGATAGAGCACGTCAAAT
ATGCGCCATTTTGAAATCGAATGTTTTCGAACAATACAAAAATAACAACC
AATCAGATTTATCTTTGATTTATGGGAAATATGATGACAGACAACACTCC
CATTTGCTTTCCCCGTTGGAATGGGATCGCTCTCAAGAGGAATGGAAACT
ACCATTTGGATCGAATTTCAAGCGACCGCACTTCATTTTCTACTCACCGC
GCGCACAGAATAAGGAAGAAGCGGAATATCTTATCTTGAATGTAACCGCA
TGTCGAGTACTCAGTGAGGGTCAAAGTTACCTCTATCCAGTCCAACTACA
ATATGATCTTGAAGAAGATGAAATTGCTTTGTTCACCAACAAAATGCGTA
TTGTTGAGTGTGCCCACCTAGCGCACGTTCATGAGCGCGCGGAAGATGAA
ATATCCGATCTCGCCCGCCTGTTGTGCCATTATGGAGCACAAGTCAATTC
ATCTATTTCTTACCAATCTGTTGTGTTTTTGTATACCAAAGATGAAAATG
ATTTAGTGGATTACCTGCAACCAGAACCTCAATTTGGTGATGTCCAAGCG
TACGCGGCGGAAGATGGGAGCAAGAATGCTCACAAAATTCTGTACATCTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003869XLOC_003869Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006916-proteinTCONS_00006916-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006916-exon-sc0000072-1575043694:51304..52298TCONS_00006916-exon-sc0000072-1575043694:51304..52298Clytia hemisphaericaexon
TCONS_00006916-exon-sc0000072-1575043694:50426..50509TCONS_00006916-exon-sc0000072-1575043694:50426..50509Clytia hemisphaericaexon
TCONS_00006916-exon-sc0000072-1510915933:51304..52298TCONS_00006916-exon-sc0000072-1510915933:51304..52298Clytia hemisphaericaexon
TCONS_00006916-exon-sc0000072-1510915933:50426..50509TCONS_00006916-exon-sc0000072-1510915933:50426..50509Clytia hemisphaericaexon
TCONS_00006916-exon-sc0000072-1491911889:51304..52298TCONS_00006916-exon-sc0000072-1491911889:51304..52298Clytia hemisphaericaexon
TCONS_00006916-exon-sc0000072-1491911889:50426..50509TCONS_00006916-exon-sc0000072-1491911889:50426..50509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:50426..52298 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.02857	1.82288	0	0	0	0	13.528	27.3042	0	0	0	0	0	0.0982346	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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