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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006893 ID=TCONS_00006893|Name=TCONS_00006893|organism=Clytia hemisphaerica|type=transcript|length=1362bp
AAATATGACATCCTGActagcaaaaataaaaacaatgaaaagggGAGCaa
gaaaaggagaaaaaaaacttacaatTGTACGCCATGGTAGACTTCTTTGA
GAAGTGTCATACTGCTTCAAAATATTCTTGCGAAAGAAGTTAATTTCTTT
AGAGTCAAAACGATGCCCCATAAATACAAAAGTCTTGATTCAGGATGATC
TATCTGGTTTTGGTAGCGTAGTGTTGTGAACTGTCGAAAgattcaaagat
tttgcttacGTGCCTTTCCTGCCAGTCTGGAGGTTTTCGCGCCGTTTTCC
CATGTGATCATGTCTTTGGTTACCATCTTTAGcttctcttgctccacaaa
tttctGATAAATTCCATGCCCGCCCACCAATGTTTTTCCGCCCATAGAAA
CTTACCGCCTTTTTACCGCCTGCCAGTTATTTTGCAGAACGAAAGTGAAG
CAAAAGCGACTCGGCGACAACTTAAATTAAAGCAATACTGTGAAAGCTTA
GAAGATTCTTTTTAATGGTGGTGTCGTCTTGTTCCAGCCACTATGACTAA
GGGAACATCCTCGTTTGGAAAAAGACACAACAAAACACACACTTTGTGTG
TAAGGTGTGGACGTTCTGCATATCACATCCAAAAGAAAGTATGTGGTGCT
TGTGGGTTCCCATCGGCTAGAAAGAGAACATACAACTGGGCTGACAAAGC
TAAAAGGCGAAAGACCACTGGTACTGGCCGTATGCGACACTTGAAGAACA
TCTATCGCCGATTCCGCAATGGATTCCAAGAAGGACAAGCCAAATCCAAG
AGGAAGACTGCTGCTCAATAAATcgttcataaaaaaataagaaaatcaga
CACCACAAAAAATGTTTATTCTATTATAAATCTGTTTACTAGGTTATTCC
ATGGTTATTCAGCACAGTACCCGGTTATTCgaagcattgagtttcaagcc
gaaggctagaggtcaatctctttggtaggatttgaagccaacaaatccta
ccaaagttgcgcggccttgagcgacccgcctggtttttacacaaatgaca
gattgaaactaaaatttaccgcttaatttcgaaaaatatatcactcgaag
acAAAGGAATTGcaagattcaatccgtcatcaaaaatacggcgcctattt
taaggcttcaatttttcttgcctgagaaaggttagagattgacctctagc
ccttcgggcttgaaactcaatgattcGAAGTGAGAAGGCGTTCACCTTTG
ATCTTCTCACCCAAGCAAAAACACTTGGTTATTCGAAGCTATTTCTATTC
CGCTTGGGCCAATTATAGATTACATCACTCAGTTATTAGAATCTTTTTCG
TTGGGAGATTAT Run BLAST on NCBI transcript from alignment at sc0000072:532478..540559+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006893 ID=TCONS_00006893|Name=TCONS_00006893|organism=Clytia hemisphaerica|type=transcript|length=8082bp|location=Sequence derived from alignment at sc0000072:532478..540559+ (Clytia hemisphaerica)
AAATATGACATCCTGActagcaaaaataaaaacaatgaaaagggGAGCaa
gaaaaggagaaaaaaaacttacaatTGTACGCCATGGTAGACTTCTTTGA
GAAGTGTCATACTGCTTCAAAATATTCTTGCGAAAGAAGTTAATTTCTTT
AGAGTCAAAACGATGCCCCATAAATACAAAAGTCTTGATTCAGGATGATC
TATCTGGTTTTGGTAGCGTAGTGTTGTGAACTGTCGAAAgattcaaagat
tttgcttacGTGCCTTTCCTGCCAGTCTGGAGGTTTTCGCGCCGTTTTCC
CATGTGATCATGTCTTTGGTTACCATCTTTAGcttctcttgctccacaaa
tttctGATAAATTCCATGCCCGCCCACCAATGTTTTTCCGCCCATAGAAA
CTTACCGCCTTTTTACCGCCTGCCAGTTATTTTGCAGAACGAAAGTGAAG
CAAAAGCGACTCGGCGACAACTTAAATTAAAGCAATACTGTGAAAGCTTA
GAAGATTCTTTTTAATGGTGGTGTCGTCTTGTTCCAGCCACTATGGTTAG
TAAATTGTTTCTTTTACGCTTCATTATCTACTGATATCTTTTGAATCTTA
ACTTTTCATGGTAAAATGATACTGAACTACTGAAGTTTGACCCTTACTGA
AATCCTTGGTTTGGACATTTTAGTTGGAATTAGTTACTGTGTTTGTGAAA
GTCGCTCTGATTGTATTGACTGGTTTTGAAATCGCTTTCAAAATTCCTGA
TCACAATGAATCCGTACTACTTGTCCAGTTAAATAAAACAGTCGGAAACG
GGTCGTATATACCTCATGGAAAGATCATCAAAATACACAATCCCAACTTC
AACGCAGTTTTATCGTACATGCAAGGATGATGACGATGTACTGACTTGTA
CCTACTTCATTCGAATGCATAACTGTGCATAAAtacatttcaaaactttt
agtGCGTGATGGAAGATGAAGGTTTTTGTATGAAGTTTGTAAAGGATTAT
GGTTAATATTACTTGATATTATGGATTAAAGCTTCCAGAATGCAACAATA
CTGGttacatttttcaaagtctAGTTACGGACGGACAGGGAATGTGCTAA
GCTTTTTAGTACAATTCAATTTGAGTGCCCTATTATTGATTATTTTTGCA
TTGACACGTATGCAGCCAGGCATGATTTTTCATTATGAAATCTCAAATTT
CAACATCTATCAACGAAAGCGATTTGTATGCTACAGTTTCTCCATAGTAG
GATAGAGATATTGAATGCGTTGGTGGATTTACTTGGACAATCTGTTTTAA
TGACATTGATAAGCTGTGACTCAGTTCAACAGAGCTTTTCCTAAAGAACA
CTTTGAAGAGTGACAACTCTGGGGGATAATGCCCTTCTTAATCATCAAAC
CAGGAAGTCAAGACTATAAAGCAAAAGAACTAAGTAATCAAGAAATACTT
TAACATATTACTTTGGACAAATCTTTGATAGCATTTTTATTAATCaatct
ttgttttctatttcattTCAGACTAAGGGAACATCCTCGTTTGGAAAAAG
ACACAACAAAACACACACTTTGTGTGTAAGGTGTGGACGTTCTGCATATC
ACATCCAAAAGAAAGTATGTGGTGCTTGTGGGTTCCCATCGGCTAGAAAG
AGAACATGTGAGTCCTTTTCCTACTTTGATCGTTTTTAATCTTTCATCTA
TAAGTACAAGAAATAAAccattaaaaatatatatacattTTGTTGTGAGA
ATGAAAACGCCTGCATGTTTTTGGGTTGCTCTCTGACCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGACCAATGATTACCACA
TACCTACATTGtatgataaatatgattttccTTTTAATGAAATGAGGTCA
AGAGACAGCAAAAAgtttctcttttgaaaataaaaacagtttGCTACGAA
ATATTAAAAACTTGTTGTAATTTCctcatctttgttttttatctcaGTGA
GGTGTTGTCTAGCTGAAAGGCGAGGGGAATTTGATGCTCTGCTTACCGTT
gcgttgcaaaaaatatttgatgtggcaaaatttcattattcattattcct
acCTGGTGCTTCCCATCTCCAACAAAGTTAAATTCCACTGTGAAATCGAG
CTGCTTTCACTTTCAGAATCAAAATGACATGCGCGAATATTCAAACGCGT
TCCGCGAATTTCTTAAACGCCCTTGTAGCCGCCCACTGCTTTAAAAAATG
CCTGCCCCATTCGCGGACGTGATTGGAACCATGTTTTTTACTCGAGGCAC
ACATTTTGTTAGCGaagatgttattttttattcactttgagtgttttgga
tagcttggcacaggaaaagaagaaaataacgagtttttgagaaataatga
acttttttgagcggcgGCTCAAGAGCATGTGGGCGGTCGATGGTAAACAG
AACATTAAATTCCCCTCGCCAAAGTCTGAATTATACACGCTTAGTTTAAG
TATCTAGATCTtgagataattcatttttagtgggtaaatatgctgaaGTA
CTGCTGACTTAGCAAAAAGTATCAATAACTTtaaatatttaaaccaaaat
atcttgaGATCTAGACATTGAAAGTTTACAACTCGTACTATTTTTGGATA
CTAATTCAGGTCTATCCAGCTGTTAGAAtgattctttcttgcagttactc
cttgacactatgtggagtaactgcaattttggacattttctacagacacc
accacccttgcagttattccatagtgtactaactgattttaccctcaaaa
ttggtgtataccacccccactgaattcctcatttttgataccattttatt
GGGTACGTCtcattaacgaccgttcaagagttaaatatctcaatcatttt
ccaagtttttttattaaaatatctttcatgaccttgattgaagaaaaaaa
tttatgatttttttttgacttttgaaaaaaatgttttgaatttttttgct
tccggaatttttaaaaacctaaaattttaagtgaaaaattgaaaaatgtg
ctcacttagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcttagtacaccatatcctaccaaaatcgacaattttgggcttaggcac
cacccatgttgcagttagtccactggtggagtaactgttttcccaaattt
aggtttatataccaccacgatagtaattgtcatagtgtttatataataac
tgcctgccccccccccccccccctgttccATGGCACCAACTGATTGCAAT
ATCTACCTTTCACGCTGAATCTATTGGTTGCaccagatatttgattttca
gaaaaaactgTTTATAAAGGGAAGACTCTTGATAAGTTCTATTGATTAAC
TGAAAATCGATCCACTTGAAAACAGCTGGAGATTcaaaggacatgttttt
tttgttaatcCTAAATTAGGagcataaaaataataatatgagAAATTTGC
CCTCATCCAAGGGGTGCCCTACAataacctgttttaaggccttttctgaa
cCTCTGAAACATGAATACTGTactcaacttttttggaaaacccatcctga
aatatttatttactttatAAACAACTCCTTTTTTCaggtcagggctgggg
ttgctGGGTATGCAAATCAGGGCTATGCTcaaattatctaaaaagctttt
acttaaccaattagtgaaaaatttcagcttgagcACAACCCTGGACATCG
ACGTACATTGTACGGTGGGGTGTATGGCAGATTTCAAGTTAACCTATTTT
AACCACCGTTCAGAGCTTTGTGGTCccaccatagtcattataaaaaacac
tggtctggaaggctttctTTTTgcacctacctccgggtacattaacccat
gttcgtccgtccgttcgtttgtctgttaccagcttttcttgagattggct
cattacttttttctgttttttggcacaatgatgcaaaatgatgattccta
aaaagtgacggagccagattttgagaaaaaaattttctggccaaaaattc
cagaaatgtgccggaaaaataggttttttgacactttctcgagatttttt
gctcaaagatgtgtattaacaatgcccaataCAGGCATGATAATGGCaga
gtccaatttttgagaaaaaatttttccggctgaaatcaccgtttttctgg
attttcattggacttctTCCttataatttgttgttttttcattcaaaaac
attatttatagcaatgcccaccatcaagcatgtttcaattttcaataaaa
ttgatttttgaagccagaactgtttaaaaatcgccggaacaacctatttt
cgccagaaagacagtatttcttgaatttctccagctgtactttatattta
tgtatgaaattttgcacactgatgcaatatgacaatatagtcaggtagaa
ttgcataactacccagacaaaaatggtgtagagatgaaattttgcacaga
ggtccaggaacatgtaaagaatcaccaaaaaaaagccCCACCCCCATGAT
GGATTTATTGCATATgcatatattttctgactgattattttcatttttgg
acctaccctggtggagtggaggtcctataaattcacctctgtccgttcgt
ccgtctgtccgttcgttagcagcttttctcgagattgaatcataggaatc
atttgatttttggtacaaaggtgcaaaacggtggtggccaaaatgtgacg
gagcccaattttcgaaaaaaaaaattttacagctaaaaacgggtttattg
gactttgtgaaaaattgtatcattaattttttcttatttttgcatgaaag
tagggtaccatcataggtaaaaaatggctcaaacagatttttgcaaaaaa
aattatttggctaaaaaaacgcatgttaatctataagaatcactattaat
aagcatacatcaatgttctgagtcaaattactcaatttctttatgagata
gatattttttttgctcatgtgggcttacttttgaagaatatgtgtgttta
gacatgaaattttggttgcttggtgtgtttttatagaaaaactggccaag
ttcgatatttttttataagcacattatcaatagATGATATCGGCTTAACC
GAATTCTCCcggaatgattacccatgatgcattgcgcaaaaaaattcacg
gacgataaccttaaccctaacaatgcatcatgggtaatcattcagagaat
tcggaaagccgatatcgtctttacttaggtattagcttttctcgagattg
gcactttcattctttatgattttttgcacaaagatgcataactataaacc
ctcgaatgtgactgagcccgattttcgaaaaaaatgtatttgagccaatt
tgggccaaaaaaacggctaaaaaaagggtttttggacattgtgaaatatg
ggatcgttgtttttttctgattttttgcatgaaagtaggtaaaagatggg
tcaagcagatttttgtaaaaaaacttttcactattaataagcatacatca
atgttcttagccaaattactcaattttttgatgagatggatgtcttttta
tgctcacgaagtttTGAacatgaaagaatatttcaagagcatgaaatttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgttctgaatgattgtt
taacgttcatgctcacgtagatatcaattatatatgtgttaaatgcataa
ccaggtaggtccataaaagtatcacttgttcttctcgcattgctatctaa
ctttcatcatcaggtagctccattcagcatgttgttaaaagatggagctt
acgtaccaaaatcgatttattttgcaaaattcGTGAATTCGCTTATTTGC
GAAAGTTTAAAGACAAagtacggtggtgctttccAGGAAGCTTAAATACC
ACCGTACACACCATTGaactttgcattttttgctCATGGTCGGACTTATC
AAAAATCTTCTCACTaggaaaaactttctttgaaaCATCGAGTTTGACCA
CGAAACTTgtctttcgcgaggtcgaattTCCACAGTACAAGTTGTACCGT
GGTAATTTGATGTCCGGTTGGGAAAATGTACGGTGTTTTCAAACCTTTAG
ATCCAGCACCACCGGCAgtgtacggcggtgtccagggttGTGCTTGAGCA
CTTGGTGGGTAATAGAAAATGTGtgacaaatatgaaaaattctaattttc
ttaaaatttctgtGTCCTGATTTGCGAGTAGTATAATATTGTTTTAAATC
AAGGACcttAAATATGGCACAAGTGGATGCTGAGAAAATGCTTAAAGGTA
GTGTGCGTACACTTTCAGAAGAAAcagaagattttatttttgagttcATA
TTGAATAGAGAAGAAAGGGTTtccttataaaatatttttctttcgtttca
gACAACTGGGCTGACAAAGCTAAAAGGCGAAAGACCACTGGTACTGGCCG
TATGCGACACTTGAAGAACATCTATCGCCGATTCCGCAATGGATTCCAAG
AAGGACAAGCCAAATCCAAGAGGAAGACTGCTGCTCAATAAATcgttcat
aaaaaaataagaaaatcagaCACCACAAAAAATGTTTATTCTATTATAAA
TCTGTTTACTAGGTTATTCCATGGTTATTCAGCACAGTACCCGGTTATTC
gaagcattgagtttcaagccgaaggctagaggtcaatctctttggtagga
tttgaagccaacaaatcctaccaaagttgcgcggccttgagcgacccgcc
tggtttttacacaaatgacagattgaaactaaaatttaccgcttaatttc
gaaaaatatatcactcgaagacAAAGGAATTGcaagattcaatccgtcat
caaaaatacggcgcctattttaaggcttcaatttttcttgcctgagaaag
gttagagattgacctctagcccttcgggcttgaaactcaatgattcGAAG
TGAGAAGGCGTTCACCTTTGATCTTCTCACCCAAGCAAAAACACTTGGTT
ATTCGAAGCTATTTCTATTCCGCTTGGGCCAATTATAGATTACATCACTC
AGTTATTAGAATCTTTTTCGTTGGGAGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006893-exon-sc0000072-1491911889:532478..533022 | TCONS_00006893-exon-sc0000072-1491911889:532478..533022 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1510915933:532478..533022 | TCONS_00006893-exon-sc0000072-1510915933:532478..533022 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1575043694:532478..533022 | TCONS_00006893-exon-sc0000072-1575043694:532478..533022 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1491911889:533999..534134 | TCONS_00006893-exon-sc0000072-1491911889:533999..534134 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1510915933:533999..534134 | TCONS_00006893-exon-sc0000072-1510915933:533999..534134 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1575043694:533999..534134 | TCONS_00006893-exon-sc0000072-1575043694:533999..534134 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1491911889:539879..540559 | TCONS_00006893-exon-sc0000072-1491911889:539879..540559 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1510915933:539879..540559 | TCONS_00006893-exon-sc0000072-1510915933:539879..540559 | Clytia hemisphaerica | exon |
| TCONS_00006893-exon-sc0000072-1575043694:539879..540559 | TCONS_00006893-exon-sc0000072-1575043694:539879..540559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:532478..540559 + |
Blast
BLAST of TCONS_00006893 vs. Swiss-Prot (Human)
Match: RL37 (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 5.961e-30 Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 3
Query: 543 MTKGTSSFGKRHNKTHTLCVRCGRSAYHIQKKVCGACGFPSARKRTYNWADKAXXXXXXXXXXMRHLKNIYRRFRNGFQEG 785
MTKGTSSFGKR NKTHTLC RCG AYH+QK CG CG+P+ RKR YNW+ KAKRR TTGTGRMRHLK +YRRFR+GF+EG
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREG 81
The following BLAST results are available for this feature:
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