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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006892 ID=TCONS_00006892|Name=TCONS_00006892|organism=Clytia hemisphaerica|type=transcript|length=560bp
gaaaaaaacaaaaaaaatccagACAAAGCataaaaaacacgaaaatatga
AGAAAGCACCATTTGTCCACTGGGTTGCCTTTGCAGTGCTTGTTTGTATT
TCGACACAAGCAGAAAGCCAAATTTCAAATGTCAAAGACACTTGCAGCCC
AACATTAATCGCTCAGTCTTGCCACAAATTTGTACGTTCAACACCACGAC
AGTATACAGCagAACCAACAATTGTCTGTATCAAGACAGCCATGAAAAAT
TGCCGAAAGAAATACCCTAACTCAAAGGAAAATCGAAAGCAATGtcgaaa
agaagaaaagaacaaGTGTCAAGCAAATAATGACAATGAAGAAGAATTCT
ATGCATGTTGCCAGAATAAGATGAGTGTCTGTTTAAGAACCCAAGGAGCC
AACGCCAGGATAGACCAAAGCCTGTTTGGAAGTGATATTACCATCCCAGT
AGAATTTTGCTATACTGAGGGTGATTGCCATATAGTTTATGTGACATATC
GATCATACACCATcgtttgaaaatcataaaacaGTGGATCCTCCATTATT
CGAACCTGTG Run BLAST on NCBI protein sequence of TCONS_00006892-protein >TCONS_00006892-protein ID=TCONS_00006892-protein|Name=TCONS_00006892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
KKTKKIQTKHKKHENMKKAPFVHWVAFAVLVCISTQAESQISNVKDTCSP
TLIAQSCHKFVRSTPRQYTAEPTIVCIKTAMKNCRKKYPNSKENRKQCRK
EEKNKCQANNDNEEEFYACCQNKMSVCLRTQGANARIDQSLFGSDITIPV
EFCYTEGDCHIVYVTYRSYTIV Run BLAST on NCBI transcript from alignment at sc0000072:517186..518734+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006892 ID=TCONS_00006892|Name=TCONS_00006892|organism=Clytia hemisphaerica|type=transcript|length=1549bp|location=Sequence derived from alignment at sc0000072:517186..518734+ (Clytia hemisphaerica)
gaaaaaaacaaaaaaaatccagACAAAGCataaaaaacacgaaaatatga
AGAAAGCACCATTTGTCCACTGGGTTGCCTTTGCAGTGCTTGTTTGTATT
TCGACACAAGCAGAAAGCCAAATTTCAAATGTCAAAGACACTTGCAGCCC
AACATTAATCGCTCAGTCTTGCCACAAATTTGTACGTTCAACACCACGAC
AGTATACAGCGTAAGTTACTTTGTCTGATTTATTAGGCTAttccattttg
taaaaatacttaaaaataacgaaaataagaacatgttaagaacattttta
ggcttgaaactcaaaaagttaagaacatcacaaagcttcaaaaattttgg
atgtttttataaaaaaaaaacgtgtagacatACTTTATACCACTCAGGCT
GGGTAGTTTGGCAAAAAGGGGTACGGGGATGTGCCGCCGGTCAGAGAATC
TTTTTTAGCTCTCACGAGTCataggtagggtcgcaaaaacaccaaatgGA
AAAATCAGTACCTTGTGGCTGAAGGAATtaggaaaaaaattgaaattttg
gtgtaaatttaattttgaatttcagtccaattttttggcaaaattcttaa
aaaccgACTCCCACGTAGGGTTCATTATTCAAACCTCAGCGGAATACCCC
CGTCAGTCGATAAAAGTAGTACCTCCTCCCCCCGgggtcttttttatttt
ttagaggTTTTGGTAGTCGACTTCATTCCAAGGGGTTAGATGACAAAAGA
TCATCTACCAAGGAATGAATAATAATTTGTTCAAGGGGTGTAGAATTTCC
TTTCCAGGGGACTTATgcaaattttgctattttccagGGCGTATCTGTAA
ACTTTCAAATAGCTTTTCACCTGAAAGTTTGTCtaaccccctgtatggat
attaTATGGAAAAGCCAAAGTTCTCCTCTTTTTTCCTTCGTCATTTAAAA
CTGTCTAAAAATCAACAGCTGTTACtttgaccccctccccctcatCCCTT
TCGAGAAAGCTGGTGTCTAAATAATATAGGGTCACCTTGGTAATCCTTAA
AACTCTTAAGTTTTTTCTTCTCTATATAAACCTTAACTCCATAAtccaaa
atttccttaactcaaacaaatcttcttttttttctcagagAACCAACCAT
TGTCTGTATCAAGACAGCNActcaaacaaatatttttgtatttttttaga
gAACCAACAATTGTCTGTATCAAGACAGCCATGAAAAATTGCCGAAAGAA
ATACCCTAACTCAAAGGAAAATCGAAAGCAATGtcgaaaagaagaaaaga
acaaGTGTCAAGCAAATAATGACAATGAAGAAGAATTCTATGCATGTTGC
CAGAATAAGATGAGTGTCTGTTTAAGAACCCAAGGAGCCAACGCCAGGAT
AGACCAAAGCCTGTTTGGAAGTGATATTACCATCCCAGTAGAATTTTGCT
ATACTGAGGGTGATTGCCATATAGTTTATGTGACATATCGATCATACACC
ATcgtttgaaaatcataaaacaGTGGATCCTCCATTATTCGAACCTGTG Coding sequence (CDS) from alignment at sc0000072:517186..518734+ >TCONS_00006892 ID=TCONS_00006892|Name=TCONS_00006892|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at sc0000072:517186..518734+ (Clytia hemisphaerica)
aaaaaaacaaaaaaaatccagACAAAGCataaaaaacacgaaaatatgaA
GAAAGCACCATTTGTCCACTGGGTTGCCTTTGCAGTGCTTGTTTGTATTT
CGACACAAGCAGAAAGCCAAATTTCAAATGTCAAAGACACTTGCAGCCCA
ACATTAATCGCTCAGTCTTGCCACAAATTTGTACGTTCAACACCACGACA
GTATACAGCagAACCAACAATTGTCTGTATCAAGACAGCCATGAAAAATT
GCCGAAAGAAATACCCTAACTCAAAGGAAAATCGAAAGCAATGtcgaaaa
gaagaaaagaacaaGTGTCAAGCAAATAATGACAATGAAGAAGAATTCTA
TGCATGTTGCCAGAATAAGATGAGTGTCTGTTTAAGAACCCAAGGAGCCA
ACGCCAGGATAGACCAAAGCCTGTTTGGAAGTGATATTACCATCCCAGTA
GAATTTTGCTATACTGAGGGTGATTGCCATATAGTTTATGTGACATATCG
ATCATACACCATcgtttgaaaaaaaacaaaaaaaatccagACAAAGCata
aaaaacacgaaaatatgaAGAAAGCACCATTTGTCCACTGGGTTGCCTTT
GCAGTGCTTGTTTGTATTTCGACACAAGCAGAAAGCCAAATTTCAAATGT
CAAAGACACTTGCAGCCCAACATTAATCGCTCAGTCTTGCCACAAATTTG
TACGTTCAACACCACGACAGTATACAGCagAACCAACAATTGTCTGTATC
AAGACAGCCATGAAAAATTGCCGAAAGAAATACCCTAACTCAAAGGAAAA
TCGAAAGCAATGtcgaaaagaagaaaagaacaaGTGTCAAGCAAATAATG
ACAATGAAGAAGAATTCTATGCATGTTGCCAGAATAAGATGAGTGTCTGT
TTAAGAACCCAAGGAGCCAACGCCAGGATAGACCAAAGCCTGTTTGGAAG
TGATATTACCATCCCAGTAGAATTTTGCTATACTGAGGGTGATTGCCATA
TAGTTTATGTGACATATCGATCATACACCATcgtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006892-exon-sc0000072-1491911889:517186..517395 | TCONS_00006892-exon-sc0000072-1491911889:517186..517395 | Clytia hemisphaerica | exon |
| TCONS_00006892-exon-sc0000072-1510915933:517186..517395 | TCONS_00006892-exon-sc0000072-1510915933:517186..517395 | Clytia hemisphaerica | exon |
| TCONS_00006892-exon-sc0000072-1575043694:517186..517395 | TCONS_00006892-exon-sc0000072-1575043694:517186..517395 | Clytia hemisphaerica | exon |
| TCONS_00006892-exon-sc0000072-1491911889:518385..518734 | TCONS_00006892-exon-sc0000072-1491911889:518385..518734 | Clytia hemisphaerica | exon |
| TCONS_00006892-exon-sc0000072-1510915933:518385..518734 | TCONS_00006892-exon-sc0000072-1510915933:518385..518734 | Clytia hemisphaerica | exon |
| TCONS_00006892-exon-sc0000072-1575043694:518385..518734 | TCONS_00006892-exon-sc0000072-1575043694:518385..518734 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:517186..518734 + |
Blast
The following BLAST results are available for this feature:
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