TCONS_00006850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006850
Unique NameTCONS_00006850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006850 ID=TCONS_00006850|Name=TCONS_00006850|organism=Clytia hemisphaerica|type=transcript|length=1347bp
TCGAACGTTTCACCGTCGATGAAGATActgaaaattttacaccccatCAA
ACAGGTATTCCTGTCACATCTTCAACAGAATGTTTACTTCATTGCGGTAT
TGGTCAATGTTTGAACTCATTGATGGAAAATAATACATGTTACTGCACGT
CTGATGACTTcaaatcgaaaaaattgtcaTCGACAATCCCAAATACAGTT
TTCTACCAAAAAAGTATAACAAAGATTACGCCAGCCCCGATATGCTACGA
AGCAAAAGGTAGTGGTTACGCCACATTTAATATCCCTTACGACGGGAGAA
TCAAATTCTTCAAACTGGTTCATGTTTATGGTTATGTTTCTTGCGCTACA
TATCACAGTAGAAGTAAATGGGGATGTTCACCGATAACCGGGCCAACCGT
AATTTCTACACTTATTACagataatcaaaacaaagtcatTGTTCCAGCTG
GTACACCAAGTCCATATGGCTCTTTTAATATACCAGgAGCAAACGATATG
TCAGACGAGTTGGTTTTACATCCTGATACGCCTTATGAAGTTGAGGGCAA
TGAAGAAATAAGGATTTGGTATGGAGAAGATTTGTTTGGAGCCGATATTG
ATAACGAAGGCAGGCATTGCATACATGTTTATGGTCAGTTCTGCTAAAAC
TCCTTTTTTGGGGTCAGTACAGAAAATTCTGCAATTGCAGTATGCGTTTT
AAGATCCTGCAATTGCAGTATGCGTTTTAATATCCTGCAATTGATTATTT
ATCCTGCATTTCCGGTAAATGATTTGTATACCTTACATTTACatggtgat
ttttgaaataatttatgaaTTTGCTCTACGAAGAGTATTGAGCACTCTTT
TAATGGTTGTTCAGCAAACACATTATTGCAATTGTATagtactagccggt
acccgacgtcgcacgccggttaagctgtagctgaacgcactaaaagtcct
ttggatgccTTTTTAACCTATTACATACaacacctgaccccgagaatgta
gtaaacccggAGAATTacatgaaagtactacctgagagatgattaatgtt
gacattttgagcttttttgacGTGTCAATGACCCACTGGAACCCCAgtca
aatcagaaaatttgccaaagtttAGAACAATCTACATTGGTAttttagta
gaaatttttgtccccgctatGGGAAAACGTTccaaaagttccaccggggc
tgttaggcaggggtgttgttacattattcacatatttcaacacaatttga
ttcaaatttcacctacattctcggggtcaggtgctgtataaGGTATACAT
TATTACACGAAAATAAGTACACACGTAATTTTAAAACACGAATTAAG
Run BLAST on NCBI

protein sequence of TCONS_00006850-protein

>TCONS_00006850-protein ID=TCONS_00006850-protein|Name=TCONS_00006850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
ERFTVDEDTENFTPHQTGIPVTSSTECLLHCGIGQCLNSLMENNTCYCTS
DDFKSKKLSSTIPNTVFYQKSITKITPAPICYEAKGSGYATFNIPYDGRI
KFFKLVHVYGYVSCATYHSRSKWGCSPITGPTVISTLITDNQNKVIVPAG
TPSPYGSFNIPGANDMSDELVLHPDTPYEVEGNEEIRIWYGEDLFGADID
NEGRHCIHVYGQFC
Run BLAST on NCBI

transcript from alignment at sc0000072:66145..69324+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006850 ID=TCONS_00006850|Name=TCONS_00006850|organism=Clytia hemisphaerica|type=transcript|length=3180bp|location=Sequence derived from alignment at sc0000072:66145..69324+ (Clytia hemisphaerica)
TCGAACGTTTCACCGTCGATGAAGATActgaaaattttacaccccatCAA
ACAGGTAAAAGACAAAATTCTAATGTGACACAGGGACAAAATCATCCCCT
CTGAGATGGGAAATGGGCTGAAGATTAGGACAGGATAAAGCAATATTCGA
GGCTGGAGATGCCCATCCAGCTGGAACACTTAGAACAGACAGTGGTTCAC
TCTAAAAAACTTaaacttacacgttttttataagaacaaactattcggct
ttgatggccaaaacgttaataacaagttaaaaacatttaaaggcATTGCC
GACTCTAAAACAGCcggtttcttagaaaaattaacaaaaatgctaaaaaa
gtggtgaaaatataaaaacatgttaagaacatttttaggcttcaaactca
aaaagttaagaacatccgaatgtttaaaaaatgttggatgttcttataaa
aaagacaaacGTGTACGGCTGAGCCATTTAGCTTAAAACTATTTCATTCA
CTCGTTCATTCATTATTTTAGGTATTCCTGTCACATCTTCAACAGAATGT
TTACTTCATTGCGGTATTGGTCAATGTTTGAACTCATTGATGGAAAATAA
TACATGTTACTGCACGTCTGATGACTTcaaatcgaaaaaattgtcaTCGA
CAATCCCAAATACAGTTTTCTACCAAAGTAAGACAAGCTTTTATAAACAT
ATAATTATGACATAAGTATTGACCCATGACCTAATCGATACAGCCTCTTC
CCCACGGACTACCAAAACTTTTGTTGATTCTCAATAGATTAATATGAAGG
AGAATTTCAGTAAttacagaaaatatttttgtaccttGTAGTCCATTACT
GCCACTGAGTTtcaaacccgaagggctagaggcgagacttctggatggga
aatgaaaccaattatttcccatccagaactcCCGCACGCAGTTTTTACAc
actttaaggctttgcagactcgaaAACATCCGATTTTTTGGGGAAatggg
taaaaaaaaaaatggtcacaaaatggagataataataagaacattttaag
aatatttttaagcttaaaactcaaaaagttaacaacatccgaaggattaa
aaaattttggatgttcttataaaaaaaacaacgtgtatgtCTTCTGTTTA
TTTACTAGAAAGTATAACAAAGATTACGCCAGCCCCGATATGCTACGAAG
CAAAAGGTAGTGGTTACGCCACATTTAATATCCCTTACGACGGGAGAATC
AAATTCTTCAAACTGGTTCATGTTTATGGTTATGTTTCTTGCGCTACATA
TCACAGTAGAAGTAAATGGGGATGTTCACCGATAACCGGGCCAACCGTAA
TTTCTACACTTATTACagataatcaaaacaaagtcatTGTTCCAGCTGGT
ACACCAAGTCCATATGGCTCTTTTAATATACCAGGTAAACTTTTCTTTGG
CGAATTTCTATGTCGCTGCCATCAAGGCAAAAGATCCAATCTCAAAACTA
GTGTATGAGAAAACTGAGAATTTTTCTGTTTGGCTAACCTTAAATCTTGA
GCTTGGCCCTTTTCATAGTGAGGGATATTCTTTCTTGTTGTTCTGTGTAA
GCCACTCTCAAGAGAGTAAGTCTAACTACTCCTTATTTGCTTTAACATGT
AAGAATACACACTAAAAGCGAGTAGATTTTAGATCACTAAAAGACTTCTG
GAAAGTAAAATTTCTTGTATGCTAAAACTTGCTTTTTGACAATTATTGAT
GACATTATTGGGTCCAGTCATCTGCGttatccaatgaaaaaaaaagcctt
aagtaGACTCCAGGCTACACGAAAGTTATTTTCAATCTGCATCTGACGTG
CATAAGTTAAACTTtctcatttcaaaaaaatagatTCTCTGGATAGGTAA
AAACAACCGCAACTTAAGGTTTTTAATCGGTCAATTCAAAGaccttagac
catgttcacacgttaccgTTTCGTTTCGCTCCGGAAttattttcgttacg
gatcgagtgtgttcatattggtttcggaacgtttcggagcaagaaaacgg
agcagttccgttctgATGAAAAAAATGGAGCGAAACTGTTTCTATCTGTT
TTGTTTtgcaacgtcttcttttttgacgtttcgaattttgacgttcacac
ttgtttcggaaccgtttcggaacggaacggtaacgtctgaacatggtctt
agagtATCGTCCTAGTTTTGTACGCAGTCAGAAATTCTTGTAGCCTGATG
AAGGCAGAGGAAAGATCTCAGAAATGCACAAGGAAtcctttctgaaagta
acttattattatattttaggAGCAAACGATATGTCAGACGAGTTGGTTTT
ACATCCTGATACGCCTTATGAAGTTGAGGGCAATGAAGAAATAAGGATTT
GGTATGGAGAAGATTTGTTTGGAGCCGATATTGATAACGAAGGCAGGCAT
TGCATACATGTTTATGGTCAGTTCTGCTAAAACTCCTTTTTTGGGGTCAG
TACAGAAAATTCTGCAATTGCAGTATGCGTTTTAAGATCCTGCAATTGCA
GTATGCGTTTTAATATCCTGCAATTGATTATTTATCCTGCATTTCCGGTA
AATGATTTGTATACCTTACATTTACatggtgatttttgaaataatttatg
aaTTTGCTCTACGAAGAGTATTGAGCACTCTTTTAATGGTTGTTCAGCAA
ACACATTATTGCAATTGTATagtactagccggtacccgacgtcgcacgcc
ggttaagctgtagctgaacgcactaaaagtcctttggatgccTTTTTAAC
CTATTACATACaacacctgaccccgagaatgtagtaaacccggAGAATTa
catgaaagtactacctgagagatgattaatgttgacattttgagcttttt
tgacGTGTCAATGACCCACTGGAACCCCAgtcaaatcagaaaatttgcca
aagtttAGAACAATCTACATTGGTAttttagtagaaatttttgtccccgc
tatGGGAAAACGTTccaaaagttccaccggggctgttaggcaggggtgtt
gttacattattcacatatttcaacacaatttgattcaaatttcacctaca
ttctcggggtcaggtgctgtataaGGTATACATTATTACACGAAAATAAG
TACACACGTAATTTTAAAACACGAATTAAG

Coding sequence (CDS) from alignment at sc0000072:66145..69324+

>TCONS_00006850 ID=TCONS_00006850|Name=TCONS_00006850|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0000072:66145..69324+ (Clytia hemisphaerica)
GAACGTTTCACCGTCGATGAAGATActgaaaattttacaccccatCAAAC
AGGTATTCCTGTCACATCTTCAACAGAATGTTTACTTCATTGCGGTATTG
GTCAATGTTTGAACTCATTGATGGAAAATAATACATGTTACTGCACGTCT
GATGACTTcaaatcgaaaaaattgtcaTCGACAATCCCAAATACAGTTTT
CTACCAAAAAAGTATAACAAAGATTACGCCAGCCCCGATATGCTACGAAG
CAAAAGGTAGTGGTTACGCCACATTTAATATCCCTTACGACGGGAGAATC
AAATTCTTCAAACTGGTTCATGTTTATGGTTATGTTTCTTGCGCTACATA
TCACAGTAGAAGTAAATGGGGATGTTCACCGATAACCGGGCCAACCGTAA
TTTCTACACTTATTACagataatcaaaacaaagtcatTGTTCCAGCTGGT
ACACCAAGTCCATATGGCTCTTTTAATATACCAGgAGCAAACGATATGTC
AGACGAGTTGGTTTTACATCCTGATACGCCTTATGAAGTTGAGGGCAATG
AAGAAATAAGGATTTGGTATGGAGAAGATTTGTTTGGAGCCGATATTGAT
AACGAAGGCAGGCATTGCATACATGTTTATGGTCAGTTCTGCTAAGAACG
TTTCACCGTCGATGAAGATActgaaaattttacaccccatCAAACAGGTA
TTCCTGTCACATCTTCAACAGAATGTTTACTTCATTGCGGTATTGGTCAA
TGTTTGAACTCATTGATGGAAAATAATACATGTTACTGCACGTCTGATGA
CTTcaaatcgaaaaaattgtcaTCGACAATCCCAAATACAGTTTTCTACC
AAAAAAGTATAACAAAGATTACGCCAGCCCCGATATGCTACGAAGCAAAA
GGTAGTGGTTACGCCACATTTAATATCCCTTACGACGGGAGAATCAAATT
CTTCAAACTGGTTCATGTTTATGGTTATGTTTCTTGCGCTACATATCACA
GTAGAAGTAAATGGGGATGTTCACCGATAACCGGGCCAACCGTAATTTCT
ACACTTATTACagataatcaaaacaaagtcatTGTTCCAGCTGGTACACC
AAGTCCATATGGCTCTTTTAATATACCAGgAGCAAACGATATGTCAGACG
AGTTGGTTTTACATCCTGATACGCCTTATGAAGTTGAGGGCAATGAAGAA
ATAAGGATTTGGTATGGAGAAGATTTGTTTGGAGCCGATATTGATAACGA
AGGCAGGCATTGCATACATGTTTATGGTCAGTTCTGCTAAGAACGTTTCA
CCGTCGATGAAGATActgaaaattttacaccccatCAAACAGGTATTCCT
GTCACATCTTCAACAGAATGTTTACTTCATTGCGGTATTGGTCAATGTTT
GAACTCATTGATGGAAAATAATACATGTTACTGCACGTCTGATGACTTca
aatcgaaaaaattgtcaTCGACAATCCCAAATACAGTTTTCTACCAAAAA
AGTATAACAAAGATTACGCCAGCCCCGATATGCTACGAAGCAAAAGGTAG
TGGTTACGCCACATTTAATATCCCTTACGACGGGAGAATCAAATTCTTCA
AACTGGTTCATGTTTATGGTTATGTTTCTTGCGCTACATATCACAGTAGA
AGTAAATGGGGATGTTCACCGATAACCGGGCCAACCGTAATTTCTACACT
TATTACagataatcaaaacaaagtcatTGTTCCAGCTGGTACACCAAGTC
CATATGGCTCTTTTAATATACCAGgAGCAAACGATATGTCAGACGAGTTG
GTTTTACATCCTGATACGCCTTATGAAGTTGAGGGCAATGAAGAAATAAG
GATTTGGTATGGAGAAGATTTGTTTGGAGCCGATATTGATAACGAAGGCA
GGCATTGCATACATGTTTATGGTCAGTTCTGCTAAGAACGTTTCACCGTC
GATGAAGATActgaaaattttacaccccatCAAACAGGTATTCCTGTCAC
ATCTTCAACAGAATGTTTACTTCATTGCGGTATTGGTCAATGTTTGAACT
CATTGATGGAAAATAATACATGTTACTGCACGTCTGATGACTTcaaatcg
aaaaaattgtcaTCGACAATCCCAAATACAGTTTTCTACCAAAAAAGTAT
AACAAAGATTACGCCAGCCCCGATATGCTACGAAGCAAAAGGTAGTGGTT
ACGCCACATTTAATATCCCTTACGACGGGAGAATCAAATTCTTCAAACTG
GTTCATGTTTATGGTTATGTTTCTTGCGCTACATATCACAGTAGAAGTAA
ATGGGGATGTTCACCGATAACCGGGCCAACCGTAATTTCTACACTTATTA
CagataatcaaaacaaagtcatTGTTCCAGCTGGTACACCAAGTCCATAT
GGCTCTTTTAATATACCAGgAGCAAACGATATGTCAGACGAGTTGGTTTT
ACATCCTGATACGCCTTATGAAGTTGAGGGCAATGAAGAAATAAGGATTT
GGTATGGAGAAGATTTGTTTGGAGCCGATATTGATAACGAAGGCAGGCAT
TGCATACATGTTTATGGTCAGTTCTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003848XLOC_003848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006850-exon-sc0000072-1491911889:66145..66198TCONS_00006850-exon-sc0000072-1491911889:66145..66198Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1510915933:66145..66198TCONS_00006850-exon-sc0000072-1510915933:66145..66198Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1575043694:66145..66198TCONS_00006850-exon-sc0000072-1575043694:66145..66198Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1491911889:66666..66821TCONS_00006850-exon-sc0000072-1491911889:66666..66821Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1510915933:66666..66821TCONS_00006850-exon-sc0000072-1510915933:66666..66821Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1575043694:66666..66821TCONS_00006850-exon-sc0000072-1575043694:66666..66821Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1491911889:67303..67578TCONS_00006850-exon-sc0000072-1491911889:67303..67578Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1510915933:67303..67578TCONS_00006850-exon-sc0000072-1510915933:67303..67578Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1575043694:67303..67578TCONS_00006850-exon-sc0000072-1575043694:67303..67578Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1491911889:68464..69324TCONS_00006850-exon-sc0000072-1491911889:68464..69324Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1510915933:68464..69324TCONS_00006850-exon-sc0000072-1510915933:68464..69324Clytia hemisphaericaexon
TCONS_00006850-exon-sc0000072-1575043694:68464..69324TCONS_00006850-exon-sc0000072-1575043694:68464..69324Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006850-proteinTCONS_00006850-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:66145..69324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.699755	0.80848	0.922678	1.22181	2.6579	2.13219	2.13049	1.99786	1.30318	0.923625	1.05718	1.36394	3.75396	3.95998	1.89719	1.15454	1.04473	0.915711	5.8243	5.02338	1.27871	1.38299	0.361882	0.623271	1.98984	2.85024	1.03797	1.2976	0.839531	0.852553
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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