|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006849 ID=TCONS_00006849|Name=TCONS_00006849|organism=Clytia hemisphaerica|type=transcript|length=4849bpRun BLAST on NCBI transcript from alignment at sc0000072:40156..52464+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006849 ID=TCONS_00006849|Name=TCONS_00006849|organism=Clytia hemisphaerica|type=transcript|length=12309bp|location=Sequence derived from alignment at sc0000072:40156..52464+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006849 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4) HSP 1 Score: 465.307 bits (1196), Expect = 7.346e-146 Identity = 229/550 (41.64%), Postives = 344/550 (62.55%), Query Frame = 2
Query: 119 HFSDISHPKEILSMLNNLRINEQLCDVTLLVGSKKILCHKVVLSAASPYFQAMFTGGLMESQLSEIKMHVHDEQAFSEIIDYFYSSRIDIKDTNVQDYVPIAGMLQLKRLQQACCDFMKRNIDAQNCLGLYEFADSHSCQQLAQVAFSYSVNHFNEVLQTDKFCSISLDFVNKLLSDNALNVTSEERVFEAAVAWIEYDRERRMCHAAQVCRNIRFSLLTPEYLMDRVATESVVRDSRECSDLLMEAIEFRLLPKRKPQSAVAQVLPRKAALTQQILYVVGGMSRREATKSGEKYDPKEGRWKAIAEMSISRFGANMASLGSSIFVCGGGDEASRLNTAEKFDSFHNVWIP-LEPMSCKRNGVGVASLGGKIYAIGGFDGSSPLSSAECYDPKTMKWSQIASMSQARFGVGCCVLNGEIYAIGGSDGCN-LRSCERYDPETNTWIVIASMSVARKQVACAAMGDCVYAIGGSDIYAVSGTSADHAGRYQTVERYSPDTDQWIMVSPLLSPRSGAGAGVLDGLLYVCGGFDGHQYLNTVEKYDPLTNRWTI 1762
+ SD HP++ L ++N LR + +LCDV L+VG+KKI H+V+LSA SPYF+AMFTG L ES+ +E+ + DE+A +ID+ Y+S+I +++ NVQ +P A +LQL +Q+ACC+F+KR +D NCLG+ FAD+HSC++L ++A ++ ++F EV+++++F + + + ++S + LNV SEE+VF A +AW++Y + R QV +++R LL+P++L+ V ++ +++ EC DL+ EA + LLP+ +P + PRK ++L+ VGG +A S E+YDP+ W+ +A MS R G ++ L ++ GG D +S LN+ E++D N W + P S R VGVA LGG +YA+GG DG S L+ E YDPK KW+++ASMS R GV VL G +YA+GGSDG + L + ERY+P+ N W IA M RK + CA D +YA+GG D + ERY+P T+QW V + S RSG G V++G L GGFDG YL T+E +DP N W +
Sbjct: 45 YISD-KHPRQTLEVINLLRKHRELCDVVLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGR----------DDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRL 583 HSP 2 Score: 149.058 bits (375), Expect = 6.743e-37 Identity = 86/215 (40.00%), Postives = 114/215 (53.02%), Query Frame = 2
Query: 1169 PLEPMSCKRNGVGVASLGGKIYAIGGFDGSSPLSSAECYDPKTMKWSQIASMSQARFGVGCCVLNGEIYAIGGSDGCN-LRSCERYDPETNTWIV-IASMSVARKQVACAAMGDCVYAIGGSDIYAVSGTSADHAGRYQTVERYSPDTDQWIMVSPLLSPRSGAGAGVLDGLLYVCGGFDGHQYLNTVEKYDPLTNRWTIGPPMIQSRDCVAVCV 1807
P +P+ C G ++A+GG+ +SS E YDP+T +W +ASMS+ R GVG VL+ +YA+GG DG + L S ERYDP+TN W +A S R V A +G +YA+GG D G S VERY P ++W V+ + + R G VL G LY GG DG LNTVE+Y+P NRW PM R + V
Sbjct: 310 PRKPIRC----------GEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQD-----GVSC-----LNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAV 504 HSP 3 Score: 107.071 bits (266), Expect = 2.106e-23 Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 2
Query: 869 RLLPKRKPQSAVAQVLPRK----AALTQQILYVVGGMSRREATKSGEKYDPKEGRWKAIAEMSISRFGANMASLGSSIFVCGGGDEASRLNTAEKFDSFHNVWIPLEPMSCKRNGVGVASLGGKIYAIGGFDGSSPLSSAECYDPKTMKWSQIASMSQARFGVGCCVLN 1363
R PK + VA + R+ A+ LY VGG + E+Y+P+E RW IA M R A I+ GG D+ + L++AE+++ N W P+ M+ +R+GVG+A + G++ A+GGFDG++ L + E +DP W M+ R G G V+
Sbjct: 432 RYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVIK 600 The following BLAST results are available for this feature:
BLAST of TCONS_00006849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.