TCONS_00006847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006847
Unique NameTCONS_00006847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006847 ID=TCONS_00006847|Name=TCONS_00006847|organism=Clytia hemisphaerica|type=transcript|length=649bp
TACCTGTCTATTCACTCATTACGGTTTTCCGGCTTAAGAATCCGGATGAA
TACTGCTAGTTACACGCTTTTGTAAGAATACTTCACAAGAATGCCCCAaa
taaaattggccaaaaagtTGCCATGGCATTTCTATCTTAATTATTTGAAA
ACCCTTAACCTTTCAAGCGAGCAATATTTTTTGAGAactatgaaaatttt
caactttttgttttgagacTGTACTGTATAACCTTATTTTTTCATCTCAC
ATTTAGCCATTTCAAATACGACAAACTGAAGGCCAACACAGCTGATCACT
TGGATCACCTACATTACCTAAACGACATTCTCCTTCTCAAAATCGATGTT
CTCAACATGATCTTAACAGATCACATGGTGAACCGTTTACTCATTCCACT
GTACATTTACAGTCTGCCATCTAAAGACGATTTGGTAGGCGAGAATGATC
CCGATCGTGTCCACATCAGTAAATTGGTGGCTTTGTTTTTATTAGCTCAG
GTAaggaaaaaagtaatttttttgttaaactTGAACAAACTAAAACATAG
TGTAAACCCCCCTCCTTCTTTAAGGGGGCATCCAACTTTTCAAGAAAGGC
TTTATAGGAGGGGGAGGTAAAAAATGTAGAATGGGGGGTTGAGTTTTTA
Run BLAST on NCBI

transcript from alignment at sc0000070:754515..755163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006847 ID=TCONS_00006847|Name=TCONS_00006847|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000070:754515..755163 (Clytia hemisphaerica)
TAAAAACTCAACCCCCCATTCTACATTTTTTACCTCCCCCTCCTATAAAG
CCTTTCTTGAAAAGTTGGATGCCCCCTTAAAGAAGGAGGGGGGTTTACAC
TATGTTTTAGTTTGTTCAagtttaacaaaaaaattacttttttcctTACC
TGAGCTAATAAAAACAAAGCCACCAATTTACTGATGTGGACACGATCGGG
ATCATTCTCGCCTACCAAATCGTCTTTAGATGGCAGACTGTAAATGTACA
GTGGAATGAGTAAACGGTTCACCATGTGATCTGTTAAGATCATGTTGAGA
ACATCGATTTTGAGAAGGAGAATGTCGTTTAGGTAATGTAGGTGATCCAA
GTGATCAGCTGTGTTGGCCTTCAGTTTGTCGTATTTGAAATGGCTAAATG
TGAGATGAAAAAATAAGGTTATACAGTACAgtctcaaaacaaaaagttga
aaattttcatagtTCTCAAAAAATATTGCTCGCTTGAAAGGTTAAGGGTT
TTCAAATAATTAAGATAGAAATGCCATGGCAactttttggccaattttat
tTGGGGCATTCTTGTGAAGTATTCTTACAAAAGCGTGTAACTAGCAGTAT
TCATCCGGATTCTTAAGCCGGAAAACCGTAATGAGTGAATAGACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003846XLOC_003846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006847-exon-sc0000070-1491911889:754515..755163TCONS_00006847-exon-sc0000070-1491911889:754515..755163Clytia hemisphaericaexon
TCONS_00006847-exon-sc0000070-1510915933:754515..755163TCONS_00006847-exon-sc0000070-1510915933:754515..755163Clytia hemisphaericaexon
TCONS_00006847-exon-sc0000070-1575043694:754515..755163TCONS_00006847-exon-sc0000070-1575043694:754515..755163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:754515..755163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118224	0.107786	0.124936	0	0.183746	0.42196	0.178931	0	0.103826	0	0.117496	0.0881423	0	0.192208	0.0749559	0	0	0.0964775	0	0	0	0	0	0	0.396051	0.358295	0	0	0	0
Blast
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BLAST of TCONS_00006847 vs. Swiss-Prot (Human)
Match: CL16A (Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.250e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:  258 HFKYDKLKANTADHLDHLHYLNDILLLKIDVLNMILTDHMVNRLLIPLYIYSLPSKDDLVGENDPDRVHISKLVALFLLAQV 503
            H    KL    A+HLDHLHYLNDIL++  + LN +LTDH++NRL +PLY+YSL ++D        +R  IS  V+L+LL+QV
Sbjct:  244 HRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDVLTDHLLNRLFLPLYVYSLENQD-----KGGERPKISLPVSLYLLSQV 320
The following BLAST results are available for this feature:
BLAST of TCONS_00006847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL16A7.250e-1750.00Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV... [more]
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