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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006845 ID=TCONS_00006845|Name=TCONS_00006845|organism=Clytia hemisphaerica|type=transcript|length=2278bp
tttagataTCTAAAACATGATAGCTGAGCTCATCTGCTTCATTGTGGTGG
CATATATAGCGATCAAAATATACTGGGAACAATCAATAAGACCATGGAGC
CATTTCGAACCCATTCCCTATAAAGTGTACCCTCTGATTGGCCAACTGCC
AAACTTAAGTCAGTTAGACGATGAAGCTTTTTGTAAAGAGCATTTCAAAT
GGCTTGACGATAAAGAAACTAAGAAACTTTTCTTGGGCACTCAAAAATAT
CTCCTTACACGGGATATAAAGttgattgaaaaacttttaatgaGTAATAC
GAATATAAGAAAGTCTGATGCGTATTGGATTCTCAAAGACTGGTTGGGAT
CGTCTATTCTCCTGACTACAGGATCACATTGGCGAAATAAACGAAAAATG
ATGACTCCATCATTTCATTTTGACATTCTGAATGATTTCTTTCCAACCAT
TGAGACATTTACTTTAAAACTATGCgaacattttgagaatcttgCAATAA
ATGGTCTGTCTTTTGATGCATATAAAGTTATGAAATGGCATTCGATTGGA
GTTATGTGTCAAACTATTTTGGGCGTTGAAATGGGTGATTTCTTAGAAGC
CGCCTTTAATGGCGTTCAACAAAATGACAATGCAGAAATGGAAACTATCA
AATTTGTAGAATGTATCGAGTTCATTTTACATTTTGTCAATTTACGTGGG
AAATGTATATGGTACTGGAATAAACATATTCTTAAACTATTTCCAATTGG
GcgagaatatttcaaaagactaGATTTCGTCAAGAAATTTGGTACCAATC
TGATTGAGAAGCGAAtcgagaaattgaaaaatgattcATTAGTAAAAGAT
CCAAGTGCAAGTAATGCCGAAAATAAGAGAGTGATTTTTTTGGATAAATT
GCTCACAAATCTCAACAAAGGTGAAGTCACAGTGGAAAGTCTCTTTTACG
ATACTCAAACCTTCATTTTTGCTGGTTATGATACGGTTGGTACTGGATTA
AGCTGGTGTTTGTTTATGCTTGGTTCCAACCCACAGCATCAAGCCAAAGC
TTATGATGAAGCTCAAAAGATCAGGAAACTTGGTCTACCAATTGATCAAG
CAACCAAGGAGATGAAGTATATAGAATGTTGTATCAAAGAATCCTTAAGA
ATCCACCCACCTGTTCCATTAGCTAGTCGTATCTTAGATGAGGGTTTTAC
CATTGATGGTGTTGATTATCCGAAAGACACCAACATTGGATTTGATATCC
TTGCATTACAACGTGATCCAAAGATCTGGCCAAACGCTGAAATCTTCAAA
ccagaaagatttttgagcaaaGAGTCATCTGCAGCTTCAAGCAGTTTTAG
TTTTATCCCTTTTTCAGCTGGACCAAGGAATTGCATTGGATTGAGGTTCG
CTATGATGGAGTTGAAGGTTACCATTTACCATTTGTTGTTGAGATTTGAG
ATAATGGCAATGCAGAAAGCCGAAGAACTGAGAGAAAACTTCGGTATCTT
ACATGATGTAGCAAATCCTGAAGggattcaaatcaaaatgaaaatgagag
AGTGATTgaatcaagaacatttttaaaagcaACAGCACTGATATCTTTag
agtaatgtttaaaaatcgaggaaattcaaagttaattaaaagctaaaaaa
attcCATTCTTTGGGGGCAATAAAGCCTCATTTTGTACAGTACTGATTCT
GTATAATTTGAACACAAAAGTTTGTTGAAAATCGGCTTAATTTAGAAATG
TTTGATTTTAGATTCCTCAAAACCCCGCCACATTTATGATCGGATAGGGT
CCAAATTTGGTCTTTTGTGGTCCTAATATTGTCTACCAAGATGGTTTACT
TTTTGCTAGGACATTGGTTTTTGACAGGATTTAGTTTTCAATTTAGTTTT
TGCATAGTCTTGTAATTTTTGTGTGCAAttttgtaatttctgcgcacttt
tgtaatattttatgcacttttgtaattttctaaGCACATTTGTATCTGCA
CActtatgtaatttctgcgcacttttgtaatattttatgcaattttgtaa
tttctgcgcagctTTTGTAATCTTTCTGCTAGCGtatctctatcccaaca
cgcgatttttttatcacggtgtcgaggaaaaagccgtggtcgtctggtac
aaGCAAACTTTCTGCGTACTTTTGTAATTTAGAGTTGCACAGTTGACTGG
CTGCGTAATTTTGtaatttcggaaaaaaaaaatcatttgaatGCTTATGA
AGAACACTTTAAAGGTCTTGGATTCCTG Run BLAST on NCBI protein sequence of TCONS_00006845-protein >TCONS_00006845-protein ID=TCONS_00006845-protein|Name=TCONS_00006845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MIAELICFIVVAYIAIKIYWEQSIRPWSHFEPIPYKVYPLIGQLPNLSQL
DDEAFCKEHFKWLDDKETKKLFLGTQKYLLTRDIKLIEKLLMSNTNIRKS
DAYWILKDWLGSSILLTTGSHWRNKRKMMTPSFHFDILNDFFPTIETFTL
KLCEHFENLAINGLSFDAYKVMKWHSIGVMCQTILGVEMGDFLEAAFNGV
QQNDNAEMETIKFVECIEFILHFVNLRGKCIWYWNKHILKLFPIGREYFK
RLDFVKKFGTNLIEKRIEKLKNDSLVKDPSASNAENKRVIFLDKLLTNLN
KGEVTVESLFYDTQTFIFAGYDTVGTGLSWCLFMLGSNPQHQAKAYDEAQ
KIRKLGLPIDQATKEMKYIECCIKESLRIHPPVPLASRILDEGFTIDGVD
YPKDTNIGFDILALQRDPKIWPNAEIFKPERFLSKESSAASSSFSFIPFS
AGPRNCIGLRFAMMELKVTIYHLLLRFEIMAMQKAEELRENFGILHDVAN
PEGIQIKMKMRE Run BLAST on NCBI transcript from alignment at sc0000070:630817..633094 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006845 ID=TCONS_00006845|Name=TCONS_00006845|organism=Clytia hemisphaerica|type=transcript|length=2278bp|location=Sequence derived from alignment at sc0000070:630817..633094 (Clytia hemisphaerica)
CAGGAATCCAAGACCTTTAAAGTGTTCTTCATAAGCattcaaatgatttt
ttttttccgaaattaCAAAATTACGCAGCCAGTCAACTGTGCAACTCTAA
ATTACAAAAGTACGCAGAAAGTTTGCttgtaccagacgaccacggctttt
tcctcgacaccgtgataaaaaaatcgcgtgttgggatagagataCGCTAG
CAGAAAGATTACAAAagctgcgcagaaattacaaaattgcataaaatatt
acaaaagtgcgcagaaattacataagTGTGCAGATACAAATGTGCttaga
aaattacaaaagtgcataaaatattacaaaagtgcgcagaaattacaaaa
TTGCACACAAAAATTACAAGACTATGCAAAAACTAAATTGAAAACTAAAT
CCTGTCAAAAACCAATGTCCTAGCAAAAAGTAAACCATCTTGGTAGACAA
TATTAGGACCACAAAAGACCAAATTTGGACCCTATCCGATCATAAATGTG
GCGGGGTTTTGAGGAATCTAAAATCAAACATTTCTAAATTAAGCCGATTT
TCAACAAACTTTTGTGTTCAAATTATACAGAATCAGTACTGTACAAAATG
AGGCTTTATTGCCCCCAAAGAATGgaatttttttagcttttaattaactt
tgaatttcctcgatttttaaacattactctAAAGATATCAGTGCTGTtgc
ttttaaaaatgttcttgattcAATCACTctctcattttcattttgatttg
aatccCTTCAGGATTTGCTACATCATGTAAGATACCGAAGTTTTCTCTCA
GTTCTTCGGCTTTCTGCATTGCCATTATCTCAAATCTCAACAACAAATGG
TAAATGGTAACCTTCAACTCCATCATAGCGAACCTCAATCCAATGCAATT
CCTTGGTCCAGCTGAAAAAGGGATAAAACTAAAACTGCTTGAAGCTGCAG
ATGACTCtttgctcaaaaatctttctggTTTGAAGATTTCAGCGTTTGGC
CAGATCTTTGGATCACGTTGTAATGCAAGGATATCAAATCCAATGTTGGT
GTCTTTCGGATAATCAACACCATCAATGGTAAAACCCTCATCTAAGATAC
GACTAGCTAATGGAACAGGTGGGTGGATTCTTAAGGATTCTTTGATACAA
CATTCTATATACTTCATCTCCTTGGTTGCTTGATCAATTGGTAGACCAAG
TTTCCTGATCTTTTGAGCTTCATCATAAGCTTTGGCTTGATGCTGTGGGT
TGGAACCAAGCATAAACAAACACCAGCTTAATCCAGTACCAACCGTATCA
TAACCAGCAAAAATGAAGGTTTGAGTATCGTAAAAGAGACTTTCCACTGT
GACTTCACCTTTGTTGAGATTTGTGAGCAATTTATCCAAAAAAATCACTC
TCTTATTTTCGGCATTACTTGCACTTGGATCTTTTACTAATgaatcattt
ttcaatttctcgaTTCGCTTCTCAATCAGATTGGTACCAAATTTCTTGAC
GAAATCtagtcttttgaaatattctcgCCCAATTGGAAATAGTTTAAGAA
TATGTTTATTCCAGTACCATATACATTTCCCACGTAAATTGACAAAATGT
AAAATGAACTCGATACATTCTACAAATTTGATAGTTTCCATTTCTGCATT
GTCATTTTGTTGAACGCCATTAAAGGCGGCTTCTAAGAAATCACCCATTT
CAACGCCCAAAATAGTTTGACACATAACTCCAATCGAATGCCATTTCATA
ACTTTATATGCATCAAAAGACAGACCATTTATTGcaagattctcaaaatg
ttcGCATAGTTTTAAAGTAAATGTCTCAATGGTTGGAAAGAAATCATTCA
GAATGTCAAAATGAAATGATGGAGTCATCATTTTTCGTTTATTTCGCCAA
TGTGATCCTGTAGTCAGGAGAATAGACGATCCCAACCAGTCTTTGAGAAT
CCAATACGCATCAGACTTTCTTATATTCGTATTACtcattaaaagttttt
caatcaaCTTTATATCCCGTGTAAGGAGATATTTTTGAGTGCCCAAGAAA
AGTTTCTTAGTTTCTTTATCGTCAAGCCATTTGAAATGCTCTTTACAAAA
AGCTTCATCGTCTAACTGACTTAAGTTTGGCAGTTGGCCAATCAGAGGGT
ACACTTTATAGGGAATGGGTTCGAAATGGCTCCATGGTCTTATTGATTGT
TCCCAGTATATTTTGATCGCTATATATGCCACCACAATGAAGCAGATGAG
CTCAGCTATCATGTTTTAGAtatctaaa Coding sequence (CDS) from alignment at sc0000070:630817..633094 >TCONS_00006845 ID=TCONS_00006845|Name=TCONS_00006845|organism=Clytia hemisphaerica|type=CDS|length=1539bp|location=Sequence derived from alignment at sc0000070:630817..633094 (Clytia hemisphaerica)
TCACTctctcattttcattttgatttgaatccCTTCAGGATTTGCTACAT
CATGTAAGATACCGAAGTTTTCTCTCAGTTCTTCGGCTTTCTGCATTGCC
ATTATCTCAAATCTCAACAACAAATGGTAAATGGTAACCTTCAACTCCAT
CATAGCGAACCTCAATCCAATGCAATTCCTTGGTCCAGCTGAAAAAGGGA
TAAAACTAAAACTGCTTGAAGCTGCAGATGACTCtttgctcaaaaatctt
tctggTTTGAAGATTTCAGCGTTTGGCCAGATCTTTGGATCACGTTGTAA
TGCAAGGATATCAAATCCAATGTTGGTGTCTTTCGGATAATCAACACCAT
CAATGGTAAAACCCTCATCTAAGATACGACTAGCTAATGGAACAGGTGGG
TGGATTCTTAAGGATTCTTTGATACAACATTCTATATACTTCATCTCCTT
GGTTGCTTGATCAATTGGTAGACCAAGTTTCCTGATCTTTTGAGCTTCAT
CATAAGCTTTGGCTTGATGCTGTGGGTTGGAACCAAGCATAAACAAACAC
CAGCTTAATCCAGTACCAACCGTATCATAACCAGCAAAAATGAAGGTTTG
AGTATCGTAAAAGAGACTTTCCACTGTGACTTCACCTTTGTTGAGATTTG
TGAGCAATTTATCCAAAAAAATCACTCTCTTATTTTCGGCATTACTTGCA
CTTGGATCTTTTACTAATgaatcatttttcaatttctcgaTTCGCTTCTC
AATCAGATTGGTACCAAATTTCTTGACGAAATCtagtcttttgaaatatt
ctcgCCCAATTGGAAATAGTTTAAGAATATGTTTATTCCAGTACCATATA
CATTTCCCACGTAAATTGACAAAATGTAAAATGAACTCGATACATTCTAC
AAATTTGATAGTTTCCATTTCTGCATTGTCATTTTGTTGAACGCCATTAA
AGGCGGCTTCTAAGAAATCACCCATTTCAACGCCCAAAATAGTTTGACAC
ATAACTCCAATCGAATGCCATTTCATAACTTTATATGCATCAAAAGACAG
ACCATTTATTGcaagattctcaaaatgttcGCATAGTTTTAAAGTAAATG
TCTCAATGGTTGGAAAGAAATCATTCAGAATGTCAAAATGAAATGATGGA
GTCATCATTTTTCGTTTATTTCGCCAATGTGATCCTGTAGTCAGGAGAAT
AGACGATCCCAACCAGTCTTTGAGAATCCAATACGCATCAGACTTTCTTA
TATTCGTATTACtcattaaaagtttttcaatcaaCTTTATATCCCGTGTA
AGGAGATATTTTTGAGTGCCCAAGAAAAGTTTCTTAGTTTCTTTATCGTC
AAGCCATTTGAAATGCTCTTTACAAAAAGCTTCATCGTCTAACTGACTTA
AGTTTGGCAGTTGGCCAATCAGAGGGTACACTTTATAGGGAATGGGTTCG
AAATGGCTCCATGGTCTTATTGATTGTTCCCAGTATATTTTGATCGCTAT
ATATGCCACCACAATGAAGCAGATGAGCTCAGCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006845-exon-sc0000070-1491911889:630817..633094 | TCONS_00006845-exon-sc0000070-1491911889:630817..633094 | Clytia hemisphaerica | exon |
| TCONS_00006845-exon-sc0000070-1510915933:630817..633094 | TCONS_00006845-exon-sc0000070-1510915933:630817..633094 | Clytia hemisphaerica | exon |
| TCONS_00006845-exon-sc0000070-1575043694:630817..633094 | TCONS_00006845-exon-sc0000070-1575043694:630817..633094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:630817..633094 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00006845 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 223.787 bits (569), Expect = 1.334e-63 Identity = 164/500 (32.80%), Postives = 259/500 (51.80%), Query Frame = 2
Query: 89 RPWSHFEPIP--YKVYPLIGQLPNLSQLDDEAFCKEHFKWLDDKETK---KLFLGTQKYLLTRDIKLIEKLLMSNTNIRKSDAYWILKDWLGSSILLTTGSHWRNKRKMMTPSFHFDILNDFFPTIETFTLKLCEHFENLAINGLSFDAYKVMKWHSIGVMCQTILGVEMGDFLEAAFNGVQQNDNAEMETIKFVECIEFILHFVNLRGKCIWYWNKHILKLFPIGREYFKRLDFVKKFGTNLIEKRIEKLK-NDSLVKDPSASN-AENKRVIFLDKLL--TNLNKGEVTVESLFYDTQTFIFAGYDTVGTGLSWCLFMLGSNPQHQAKAYDEAQKIRKLGLPIDQAT----KEMKYIECCIKESLRIHPPVPLASRILDEGFTIDGVDYPKDTNIGFDILALQRDPKIWPNAEIFKPERFLSKEXXXXXXXXXXXXXXXGPRNCIGLRFAMMELKVTIYHLLLRFEIMAMQKAEELRENFGILHDVANPEGIQIKMKMR 1549
R W PIP + YPL+G L + D F ++ ++ ++ KL++G + + + +E +L S+ I KS Y L+ WLG +L +TG+ WR++RKM+TP+FHF IL DF + L + E IN +F+ + + ++ ++C+T +G + G Q ND++E +V + + + R K W W +F G E+ K L + F ++I +R ++ N+ D S ++NKR FLD LL T+ ++ E + + TF+F G+DT ++W L++LGSNP+ Q K E + G AT K+++Y+EC IKE+LR+ P VPL +R + E + G K T AL RDP+ +PN E F+PERF E++ ++++PFSAGPRNCIG +FA+ME K + +L F I + QK EEL ++ +N GI IK+K R
Sbjct: 42 RKWQQMRPIPTVARAYPLVGH-ALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEK-HINQEAFNCFFYITLCALDIICETAMGKNI---------GAQSNDDSE-----YVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDV--FGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFP-ENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSN--GIWIKLKRR 520
The following BLAST results are available for this feature:
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