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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006841 ID=TCONS_00006841|Name=TCONS_00006841|organism=Clytia hemisphaerica|type=transcript|length=1593bp
gtaggttcttaaaaaaaacgaatgaaaaaatgttattttctcattctcag
cctcagcatgtttcttacatgtttcttagtttttaggcattctgagcctc
atgtttcttaaaagtgtgtttcttaaaaaaaaacgaatgaaaaaatgtta
ttttctcattctcagcctcagcatgtttcttacatgtttcttagttttta
ggcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaaa
gactaaaaCTTAGCTGAAAATGATATCATTGTCAAAATATAGTCTTGGAA
attataaattcatgttttgatatgtttgNTACATGCTAGTTTTAAATATA
GTATGTAAAtaaattagtattttgttaAAGAAACAACAAGTATCAGTAAC
CAGTTTGACCTGCCCTACAATAATATTATCGTATATTTTGGAAATCCATA
AAGTATGGATTCTATCACAATATAATTATATTGTGTGCAAGAAGTTTGAA
AGGGTTGTTATCTTCAGCAACATGGCATTAACAAGGACCTCATTTCAAAT
GTTAAGGTACTCTACCAAacatttttcacacaaaaaaatCGCTGCTCAAA
ACCGTTTAGCGATTCGTTTACTTTCGTCTACGTATCAACGTCAAATATTA
ACGGACGAGCAAGTGGAAGCGTATCAACGTAACAGTTACGTCGTTCTCAG
AGATCTCCTTACGCCGGACGAAAAGAAATTATTTACGAGTGCCATTAACG
AAATCGAAAAATGGCCGGTTAGTGACGACAAATGGTTTACGTATTACGAG
ACAAACAGTGGCAAAAGACGTCTGTCCCGCCTCGAAGCTCTTTACGAACA
CCATGCCGTAACGAAGAAAATGGTTGAAGGAAAGCTAGGCCAAGCTGCTT
CAGATTTGCTTGGGGAAGATGCCGTTGTTCTCAaagataaaatcaatttt
aagtaTCCTGGGGGTATCGGATACAACGCACACCAGGATGGTCTTGGGTA
CGAAGATTTTGGACAATATTTTCATATGGCTGCTTTAGTGCCTGCAGATC
CAATGACCTTGGAGAATGGTTGTTTGAAGATAGTTCCAGGGAAGTGGGGC
AAATTGCCATTTTTACCGCTGGACGAAACTGGTGGTGATATCAAAGAAGA
GAtagcgaaaaattttaaatgggATCCAGTGATTTGTGATGCTGGAACTG
TAGTTATGTTTAATTCTTATGTCCCTCATAAATCTGATGTCAATCAAACG
AACCAATCACGACGCGCCCTTTACATCACGTGGAACGGTATTTCTCTAGG
TGATAAGCGTGACGAATTTTATTCCGTGAGACGAAAACTGTACCCATCAG
ATCATTTGCGTGATCCTAATAAAGACTATTCAGAGGGAATTTTACTATAT
AAAGAACATATACTAGAGATGGCTAATTCTAGAATGCCAAAAATTGAACG
CGAAAATTATTGACACTTTGtatgaaatttcattttaattttatgtTATA
CAAACGCTCTTGCAAATTTATGCACTAACCTTGTACAAATCTGTATCTTA
AATTTTCCAAACATTTgttctctgttttttttttctatttaca Run BLAST on NCBI protein sequence of TCONS_00006841-protein >TCONS_00006841-protein ID=TCONS_00006841-protein|Name=TCONS_00006841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MALTRTSFQMLRYSTKHFSHKKIAAQNRLAIRLLSSTYQRQILTDEQVEA
YQRNSYVVLRDLLTPDEKKLFTSAINEIEKWPVSDDKWFTYYETNSGKRR
LSRLEALYEHHAVTKKMVEGKLGQAASDLLGEDAVVLKDKINFKYPGGIG
YNAHQDGLGYEDFGQYFHMAALVPADPMTLENGCLKIVPGKWGKLPFLPL
DETGGDIKEEIAKNFKWDPVICDAGTVVMFNSYVPHKSDVNQTNQSRRAL
YITWNGISLGDKRDEFYSVRRKLYPSDHLRDPNKDYSEGILLYKEHILEM
ANSRMPKIERENY Run BLAST on NCBI transcript from alignment at sc0000070:547793..549385 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006841 ID=TCONS_00006841|Name=TCONS_00006841|organism=Clytia hemisphaerica|type=transcript|length=1593bp|location=Sequence derived from alignment at sc0000070:547793..549385 (Clytia hemisphaerica)
tgtaaatagaaaaaaaaaacagagaacAAATGTTTGGAAAATTTAAGATA
CAGATTTGTACAAGGTTAGTGCATAAATTTGCAAGAGCGTTTGTATAaca
taaaattaaaatgaaatttcataCAAAGTGTCAATAATTTTCGCGTTCAA
TTTTTGGCATTCTAGAATTAGCCATCTCTAGTATATGTTCTTTATATAGT
AAAATTCCCTCTGAATAGTCTTTATTAGGATCACGCAAATGATCTGATGG
GTACAGTTTTCGTCTCACGGAATAAAATTCGTCACGCTTATCACCTAGAG
AAATACCGTTCCACGTGATGTAAAGGGCGCGTCGTGATTGGTTCGTTTGA
TTGACATCAGATTTATGAGGGACATAAGAATTAAACATAACTACAGTTCC
AGCATCACAAATCACTGGATcccatttaaaatttttcgctaTCTCTTCTT
TGATATCACCACCAGTTTCGTCCAGCGGTAAAAATGGCAATTTGCCCCAC
TTCCCTGGAACTATCTTCAAACAACCATTCTCCAAGGTCATTGGATCTGC
AGGCACTAAAGCAGCCATATGAAAATATTGTCCAAAATCTTCGTACCCAA
GACCATCCTGGTGTGCGTTGTATCCGATACCCCCAGGAtacttaaaattg
attttatcttTGAGAACAACGGCATCTTCCCCAAGCAAATCTGAAGCAGC
TTGGCCTAGCTTTCCTTCAACCATTTTCTTCGTTACGGCATGGTGTTCGT
AAAGAGCTTCGAGGCGGGACAGACGTCTTTTGCCACTGTTTGTCTCGTAA
TACGTAAACCATTTGTCGTCACTAACCGGCCATTTTTCGATTTCGTTAAT
GGCACTCGTAAATAATTTCTTTTCGTCCGGCGTAAGGAGATCTCTGAGAA
CGACGTAACTGTTACGTTGATACGCTTCCACTTGCTCGTCCGTTAATATT
TGACGTTGATACGTAGACGAAAGTAAACGAATCGCTAAACGGTTTTGAGC
AGCGatttttttgtgtgaaaaatgtTTGGTAGAGTACCTTAACATTTGAA
ATGAGGTCCTTGTTAATGCCATGTTGCTGAAGATAACAACCCTTTCAAAC
TTCTTGCACACAATATAATTATATTGTGATAGAATCCATACTTTATGGAT
TTCCAAAATATACGATAATATTATTGTAGGGCAGGTCAAACTGGTTACTG
ATACTTGTTGTTTCTTtaacaaaatactaatttaTTTACATACTATATTT
AAAACTAGCATGTANcaaacatatcaaaacatgaatttataatTTCCAAG
ACTATATTTTGACAATGATATCATTTTCAGCTAAGttttagtcttttttt
ttttaagaaacacacttttaagaaacatgaggctcagaatgcctaaaaac
taagaaacatgtaagaaacatgctgaggctgagaatgagaaaataacatt
ttttcattcgtttttttttaagaaacacacttttaagaaacatgaggctc
agaatgcctaaaaactaagaaacatgtaagaaacatgctgaggctgagaa
tgagaaaataacattttttcattcgttttttttaagaacctac Coding sequence (CDS) from alignment at sc0000070:547793..549385 >TCONS_00006841 ID=TCONS_00006841|Name=TCONS_00006841|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000070:547793..549385 (Clytia hemisphaerica)
TCAATAATTTTCGCGTTCAATTTTTGGCATTCTAGAATTAGCCATCTCTA
GTATATGTTCTTTATATAGTAAAATTCCCTCTGAATAGTCTTTATTAGGA
TCACGCAAATGATCTGATGGGTACAGTTTTCGTCTCACGGAATAAAATTC
GTCACGCTTATCACCTAGAGAAATACCGTTCCACGTGATGTAAAGGGCGC
GTCGTGATTGGTTCGTTTGATTGACATCAGATTTATGAGGGACATAAGAA
TTAAACATAACTACAGTTCCAGCATCACAAATCACTGGATcccatttaaa
atttttcgctaTCTCTTCTTTGATATCACCACCAGTTTCGTCCAGCGGTA
AAAATGGCAATTTGCCCCACTTCCCTGGAACTATCTTCAAACAACCATTC
TCCAAGGTCATTGGATCTGCAGGCACTAAAGCAGCCATATGAAAATATTG
TCCAAAATCTTCGTACCCAAGACCATCCTGGTGTGCGTTGTATCCGATAC
CCCCAGGAtacttaaaattgattttatcttTGAGAACAACGGCATCTTCC
CCAAGCAAATCTGAAGCAGCTTGGCCTAGCTTTCCTTCAACCATTTTCTT
CGTTACGGCATGGTGTTCGTAAAGAGCTTCGAGGCGGGACAGACGTCTTT
TGCCACTGTTTGTCTCGTAATACGTAAACCATTTGTCGTCACTAACCGGC
CATTTTTCGATTTCGTTAATGGCACTCGTAAATAATTTCTTTTCGTCCGG
CGTAAGGAGATCTCTGAGAACGACGTAACTGTTACGTTGATACGCTTCCA
CTTGCTCGTCCGTTAATATTTGACGTTGATACGTAGACGAAAGTAAACGA
ATCGCTAAACGGTTTTGAGCAGCGatttttttgtgtgaaaaatgtTTGGT
AGAGTACCTTAACATTTGAAATGAGGTCCTTGTTAATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006841-exon-sc0000070-1491911889:547793..549385 | TCONS_00006841-exon-sc0000070-1491911889:547793..549385 | Clytia hemisphaerica | exon |
| TCONS_00006841-exon-sc0000070-1510915933:547793..549385 | TCONS_00006841-exon-sc0000070-1510915933:547793..549385 | Clytia hemisphaerica | exon |
| TCONS_00006841-exon-sc0000070-1575043694:547793..549385 | TCONS_00006841-exon-sc0000070-1575043694:547793..549385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:547793..549385 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008775 | Phytyl_CoA_dOase |
Blast
The following BLAST results are available for this feature:
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