TCONS_00006840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006840
Unique NameTCONS_00006840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006840 ID=TCONS_00006840|Name=TCONS_00006840|organism=Clytia hemisphaerica|type=transcript|length=585bp
CCATTTTTAGTCAATATGTAAACGATTCCTAAAAAACTAACATTAAGGGA
TTTTAGTCtcaatttgattcttttttttttcctttttcaaccTCGATGTC
ATACCTCGTCGATTTGTGAGGATTTAACCCCAATTAATTTAAAGTATTCG
TTATTGGAAATAAGAAAGGTCTACAGTTTCAGACTTTAATTGTTCATTAG
CTTTAAGCATGTGTTCTTTTTTTTCCTACAGTGTGGAAACCATTAAAATC
CAATAAAGGTATTTTCTCTGAAGCGATTAGCACGTGATAGCAAAACAGAA
TGTACAATTAGGgcaaattcttgatattcatgacgtaaacTTTTATGCGG
AATATTTCCGTATAAAATATTACATCAAGAATATCAAGAAATTACctaat
tatattatattttatacTGTGAGTCATTTGCGAGACTGCAGCCACTGTGA
CTGTCTTGAATGTGACTGACTCTAGGTCAAGTTTTGTGAGcagaaaagtt
gaaataaaatatatttttagatctttattaaacaattttaaagAGTTTTT
AGTGGATTTAGTTTGAAAGCAGTAAAAAATCTGGC
Run BLAST on NCBI

transcript from alignment at sc0000070:547101..547685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006840 ID=TCONS_00006840|Name=TCONS_00006840|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at sc0000070:547101..547685 (Clytia hemisphaerica)
GCCAGATTTTTTACTGCTTTCAAACTAAATCCACTAAAAACTctttaaaa
ttgtttaataaagatctaaaaatatattttatttcaacttttctgCTCAC
AAAACTTGACCTAGAGTCAGTCACATTCAAGACAGTCACAGTGGCTGCAG
TCTCGCAAATGACTCACAgtataaaatataatataattagGTAATTTCTT
GATATTCTTGATGTAATATTTTATACGGAAATATTCCGCATAAAAgttta
cgtcatgaatatcaagaatttgcCCTAATTGTACATTCTGTTTTGCTATC
ACGTGCTAATCGCTTCAGAGAAAATACCTTTATTGGATTTTAATGGTTTC
CACACTGTAGGAAAAAAAAGAACACATGCTTAAAGCTAATGAACAATTAA
AGTCTGAAACTGTAGACCTTTCTTATTTCCAATAACGAATACTTTAAATT
AATTGGGGTTAAATCCTCACAAATCGACGAGGTATGACATCGAggttgaa
aaaggaaaaaaaaaagaatcaaattgaGACTAAAATCCCTTAATGTTAGT
TTTTTAGGAATCGTTTACATATTGACTAAAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003839XLOC_003839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006840-exon-sc0000070-1491911889:547101..547685TCONS_00006840-exon-sc0000070-1491911889:547101..547685Clytia hemisphaericaexon
TCONS_00006840-exon-sc0000070-1510915933:547101..547685TCONS_00006840-exon-sc0000070-1510915933:547101..547685Clytia hemisphaericaexon
TCONS_00006840-exon-sc0000070-1575043694:547101..547685TCONS_00006840-exon-sc0000070-1575043694:547101..547685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:547101..547685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.106834	0.104521	0	0	0.606546	0.340704	0.318047	0	0.095595	1.13113	0.62753	1.75958	0.32147	0.689972	0.141665	0.508207	2.40725	0.734713	2.91931	2.40289	4.32746	4.03264	1.41828	1.17537	0.12938	0.552313	3.24655	3.52112
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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