TCONS_00006835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006835
Unique NameTCONS_00006835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006835 ID=TCONS_00006835|Name=TCONS_00006835|organism=Clytia hemisphaerica|type=transcript|length=713bp
aagagaaaaaatttatcttgagttaggtctTGAAAGCCTGTCGGACAGGC
GACTAAGTCGAAGACTAATttacttttataaaataatcaatgGCTTTGCA
CCTACTTATCTCTCAAATGTTCTTCCTCCGCAAAGAGGGGAGGAGGAACG
TAGGGCAGGGCGGAGGATACAACCACCATTTGAGGCACCATTTTGTAGGA
CTGAACGTTACCGTGCCTCCTTTTTTCCGTTTTGCATCAATGAATGGAAT
AACCTGGGCGAAAATATACGAAATCTTCCTTCTATTTCATTATTCAAACA
AgcaattcttaaaattttttagaCCTTGCGCTAACTCAGTTTTCAGGGCT
AGTGACAACGATGGCGTGGTTCTActtaaccgattaagggttggtttcag
tcatcttcggGACCACAAATTTAGACACAACTTTGCAGACACAATCGACC
CATTCTGCAACTGTCGAAGTAATTCTGTTGAAACGACACAACATTTCctg
atgcattgctctgattactcCAATAACAGACTTGTTATGTTcgacagcct
tcttcaacttgacataaccttgtttccatttaattccaaaacattgtgta
gaatacttctttatggcgaACCCGATTTTAGCATTatccaaaatcatgat
atattgagtataacgataaaatttatctgtgatacaagccgttttggggg
accgctattttag
Run BLAST on NCBI

protein sequence of TCONS_00006835-protein

>TCONS_00006835-protein ID=TCONS_00006835-protein|Name=TCONS_00006835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MALHLLISQMFFLRKEGRRNVGQGGGYNHHLRHHFVGLNVTVPPFFRFAS
MNGITWAKIYEIFLLFHYSNKQFLKFFRPCANSVFRASDNDGVVLLNRLR
VGFSHLRDHKFRHNFADTIDPFCNCRSNSVETTQHFLMHCSDYSNNRLVM
FDSLLQLDITLFPFNSKTLCRILLYGEPDFSIIQNHDILSITIKFICDTS
RFGGPLF
Run BLAST on NCBI

transcript from alignment at sc0000070:497677..498389

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006835 ID=TCONS_00006835|Name=TCONS_00006835|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at sc0000070:497677..498389 (Clytia hemisphaerica)
ctaaaatagcggtcccccaaaacggcttgtatcacagataaattttatcg
ttatactcaatatatcatgattttggatAATGCTAAAATCGGGTtcgcca
taaagaagtattctacacaatgttttggaattaaatggaaacaaggttat
gtcaagttgaagaaggctgtcgAACATAACAAGTCTGTTATTGgagtaat
cagagcaatgcatcagGAAATGTTGTGTCGTTTCAACAGAATTACTTCGA
CAGTTGCAGAATGGGTCGATTGTGTCTGCAAAGTTGTGTCTAAATTTGTG
GTCccgaagatgactgaaaccaacccttaatcggttaagTAGAACCACGC
CATCGTTGTCACTAGCCCTGAAAACTGAGTTAGCGCAAGGtctaaaaaat
tttaagaattgcTTGTTTGAATAATGAAATAGAAGGAAGATTTCGTATAT
TTTCGCCCAGGTTATTCCATTCATTGATGCAAAACGGAAAAAAGGAGGCA
CGGTAACGTTCAGTCCTACAAAATGGTGCCTCAAATGGTGGTTGTATCCT
CCGCCCTGCCCTACGTTCCTCCTCCCCTCTTTGCGGAGGAAGAACATTTG
AGAGATAAGTAGGTGCAAAGCcattgattattttataaaagtaaATTAGT
CTTCGACTTAGTCGCCTGTCCGACAGGCTTTCAagacctaactcaagata
aattttttctctt

Coding sequence (CDS) from alignment at sc0000070:497677..498389

>TCONS_00006835 ID=TCONS_00006835|Name=TCONS_00006835|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000070:497677..498389 (Clytia hemisphaerica)
ctaaaatagcggtcccccaaaacggcttgtatcacagataaattttatcg
ttatactcaatatatcatgattttggatAATGCTAAAATCGGGTtcgcca
taaagaagtattctacacaatgttttggaattaaatggaaacaaggttat
gtcaagttgaagaaggctgtcgAACATAACAAGTCTGTTATTGgagtaat
cagagcaatgcatcagGAAATGTTGTGTCGTTTCAACAGAATTACTTCGA
CAGTTGCAGAATGGGTCGATTGTGTCTGCAAAGTTGTGTCTAAATTTGTG
GTCccgaagatgactgaaaccaacccttaatcggttaagTAGAACCACGC
CATCGTTGTCACTAGCCCTGAAAACTGAGTTAGCGCAAGGtctaaaaaat
tttaagaattgcTTGTTTGAATAATGAAATAGAAGGAAGATTTCGTATAT
TTTCGCCCAGGTTATTCCATTCATTGATGCAAAACGGAAAAAAGGAGGCA
CGGTAACGTTCAGTCCTACAAAATGGTGCCTCAAATGGTGGTTGTATCCT
CCGCCCTGCCCTACGTTCCTCCTCCCCTCTTTGCGGAGGAAGAACATTTG
AGAGATAAGTAGGTGCAAAGCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003834XLOC_003834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006835-exon-sc0000070-1491911889:497677..498389TCONS_00006835-exon-sc0000070-1491911889:497677..498389Clytia hemisphaericaexon
TCONS_00006835-exon-sc0000070-1510915933:497677..498389TCONS_00006835-exon-sc0000070-1510915933:497677..498389Clytia hemisphaericaexon
TCONS_00006835-exon-sc0000070-1575043694:497677..498389TCONS_00006835-exon-sc0000070-1575043694:497677..498389Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006835-proteinTCONS_00006835-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:497677..498389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59564	2.55346	4.62216	6.8206	4.42852	2.53665	4.4382	4.01528	1.12511	1.90516	1.98102	1.54987	1.79211	1.04592	2.63575	3.17122	2.11782	3.14279	2.0193	3.09334	3.76353	3.67922	1.88936	2.54142	0.731949	1.29414	3.85541	2.58435	2.39179	4.0529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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