TCONS_00006834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006834
Unique NameTCONS_00006834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006834 ID=TCONS_00006834|Name=TCONS_00006834|organism=Clytia hemisphaerica|type=transcript|length=546bp
CTGCTAGGTTACAACCCAAAAGCTTCCAAGTCGTATTTGATAGTGAAGGA
GGAGAAGCTCGAAGAAGCAAAGGTGCTATTCAAAGACACAGGAATCAACA
TCACAATTGATGGACACAAATATCTTGATGGTTTCATTGGTCAAGAGGGT
GACCAACAGGAATATGTAAAGAAATTGATAGGAAAATGGCAAGCTGAGCT
CCAAACACTGAGTGATATCGCAAGATCAGAACCACACCTCGCCTACTGTG
CATTCGTTGGTGGGTATGTTAGCAAGTTCACCTACTACCTACGTGTGATG
CCCAGAATTGAGGAATATCTGAAGCCCCTCGATGAAGTTATTGCCAAACA
TTTCATTCCTTCAATTGATGAAAACCATCACTAAGGAAGAATTCCAAAAC
TCCAGAGAACTTACAATGAAGTTCTCCCAAGACATCATCGAACAGAAACC
AGTGTACGAAGTTGACAACAGGGCAGCAAAGTCTGAGATCAAGAGAAAAC
GGAAAGAAGGAAGAACAATCATCCTCGAAAATCTCCGCAGGGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00006834-protein

>TCONS_00006834-protein ID=TCONS_00006834-protein|Name=TCONS_00006834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
LLGYNPKASKSYLIVKEEKLEEAKVLFKDTGINITIDGHKYLDGFIGQEG
DQQEYVKKLIGKWQAELQTLSDIARSEPHLAYCAFVGGYVSKFTYYLRVM
PRIEEYLKPLDEVIAKHFIPSIDENHH
Run BLAST on NCBI

transcript from alignment at sc0000070:496056..496601

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006834 ID=TCONS_00006834|Name=TCONS_00006834|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0000070:496056..496601 (Clytia hemisphaerica)
ATTTCCCTGCGGAGATTTTCGAGGATGATTGTTCTTCCTTCTTTCCGTTT
TCTCTTGATCTCAGACTTTGCTGCCCTGTTGTCAACTTCGTACACTGGTT
TCTGTTCGATGATGTCTTGGGAGAACTTCATTGTAAGTTCTCTGGAGTTT
TGGAATTCTTCCTTAGTGATGGTTTTCATCAATTGAAGGAATGAAATGTT
TGGCAATAACTTCATCGAGGGGCTTCAGATATTCCTCAATTCTGGGCATC
ACACGTAGGTAGTAGGTGAACTTGCTAACATACCCACCAACGAATGCACA
GTAGGCGAGGTGTGGTTCTGATCTTGCGATATCACTCAGTGTTTGGAGCT
CAGCTTGCCATTTTCCTATCAATTTCTTTACATATTCCTGTTGGTCACCC
TCTTGACCAATGAAACCATCAAGATATTTGTGTCCATCAATTGTGATGTT
GATTCCTGTGTCTTTGAATAGCACCTTTGCTTCTTCGAGCTTCTCCTCCT
TCACTATCAAATACGACTTGGAAGCTTTTGGGTTGTAACCTAGCAG

Coding sequence (CDS) from alignment at sc0000070:496056..496601

>TCONS_00006834 ID=TCONS_00006834|Name=TCONS_00006834|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000070:496056..496601 (Clytia hemisphaerica)
TTAGTGATGGTTTTCATCAATTGAAGGAATGAAATGTTTGGCAATAACTT
CATCGAGGGGCTTCAGATATTCCTCAATTCTGGGCATCACACGTAGGTAG
TAGGTGAACTTGCTAACATACCCACCAACGAATGCACAGTAGGCGAGGTG
TGGTTCTGATCTTGCGATATCACTCAGTGTTTGGAGCTCAGCTTGCCATT
TTCCTATCAATTTCTTTACATATTCCTGTTGGTCACCCTCTTGACCAATG
AAACCATCAAGATATTTGTGTCCATCAATTGTGATGTTGATTCCTGTGTC
TTTGAATAGCACCTTTGCTTCTTCGAGCTTCTCCTCCTTCACTATCAAAT
ACGACTTGGAAGCTTTTGGGTTGTAACCTAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003833XLOC_003833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006834-exon-sc0000070-1491911889:496056..496601TCONS_00006834-exon-sc0000070-1491911889:496056..496601Clytia hemisphaericaexon
TCONS_00006834-exon-sc0000070-1510915933:496056..496601TCONS_00006834-exon-sc0000070-1510915933:496056..496601Clytia hemisphaericaexon
TCONS_00006834-exon-sc0000070-1575043694:496056..496601TCONS_00006834-exon-sc0000070-1575043694:496056..496601Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006834-proteinTCONS_00006834-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:496056..496601 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206024	0.33622	0.925378	0.285232	0.184748	0	0.158298	0	0.150911	0.140312	0.486574	0.324853	0.129572	0	0	0.141596	0	0.303842	0	0.234211	0.754322	0.165421	0.197915	0.233469	0.315915	0.100876	0.797223	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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