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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006831 ID=TCONS_00006831|Name=TCONS_00006831|organism=Clytia hemisphaerica|type=transcript|length=1489bp
TTAGTATACGGAATCATTCTCGTTCTGTTgtttctttgttcttattttca
gtttttccacAAAGTTTTCCATAGAGTTTAGAACCATAATAATAACCAAC
CATTACACAAACCCAGCCAAGACAAACAAAAGCTGTCATCAAAAACAACA
TTCCCCCACCAAAATGATCATACGCAACTCCACCCGCCATATTGGCGATC
AAAATACCGAATCCAAATTTCAATCCGTTTACAATACTGACCATTGTAGT
ATGAATTTCCTTTGGTGAAATGACCGTCACGTGTTCCATCATGGCAGCAA
AAAAAAGTGCAAATCCAAAACTATGTAAAAGCTGTATTGGCAGCATCCAC
CATTGATTAGTGACGAACGACGTCAATAAGAATCGTAAGAAATAGGAAAA
GATACCAGCGATTAAACACGGGATAGTATCGAcagttttgataattttgt
gGGATACAGGAAACATAATAATTTCTCCGATGCTCCCTATTACGACACAC
AACCCCATGGCTGTTTTTGTTGACGATAACTCCTTTTCCATGTACAAGAA
CATGAAACCATACAATAAACCATGAAAAATTCCACAGAGTAAAACCGATA
ACAAGAAAACGATATTTGGAATTTTTCCACATGTTTTCAAAACTGGTTTT
AAAAGAGATTTTTTAGCTTGCTCATTGACATCTGTCTGAATCTGTCTATC
TTCTGATTTGAGAGCCACGTAAAATGACATCGGCATAAAAATCACAAACA
TCGGTAGAAACACATAAAATGTTGCTGTATAATCCGATAGGTAGTCATCC
TGGTACCCATCGATGGCCACACCAGCCAGAAAACTTGTCAATGCGAACCC
AATCGCTCCGAAAAGACGTTGACGACCAAAATTAGTCTTCTTAGCGCTTT
TCTTAACTAGATTCATTGTAAAAGTATCGAGAAAAGAGACCACATTTAAC
TCGACAAATCCTGATGCGAACATGACAGCCATCATTATATAAAACATTGT
GTTATCACCACATTCTGTTGTACAGTACTTGATATCCTTGTAAGATCTTG
TGCCGTTTTCATAAGACGTTATATTTCttccaagctcaaaattacTCACG
TGTTTTGCGATCCAAGGCATTGGAAAAATTAACGACAAAAATGTGAAAGA
TAATAGCATCcataaagttttgtgatgaccaGTAAAGTCTGCCAACATGC
CCCATAAAGGTGCTCCGATGAATGCAGGAATGGCACGTAAACCAGTGATA
AGACCAGCTTGAGTAGCCGTCAGACCCAACGAAGTTAAGAAGACATTGAA
GTATGGGACACAGCAGGCTAGAgcaccaaaaagaaaaaagtaagccAACT
TAGAGGGGATCATGTTTAAATCCGGTGTTAAGATGTCACGAATATTCATT
CTTCGATTTTTGGATGTATCAACATTGTTGTAATCTTTTTCTACAAAGTT
GGAGGCTTCgctatccaccattttggagaATGTTCTCAC Run BLAST on NCBI protein sequence of TCONS_00006831-protein >TCONS_00006831-protein ID=TCONS_00006831-protein|Name=TCONS_00006831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
VRTFSKMVDSEASNFVEKDYNNVDTSKNRRMNIRDILTPDLNMIPSKLAY
FFLFGALACCVPYFNVFLTSLGLTATQAGLITGLRAIPAFIGAPLWGMLA
DFTGHHKTLWMLLSFTFLSLIFPMPWIAKHVSNFELGRNITSYENGTRSY
KDIKYCTTECGDNTMFYIMMAVMFASGFVELNVVSFLDTFTMNLVKKSAK
KTNFGRQRLFGAIGFALTSFLAGVAIDGYQDDYLSDYTATFYVFLPMFVI
FMPMSFYVALKSEDRQIQTDVNEQAKKSLLKPVLKTCGKIPNIVFLLSVL
LCGIFHGLLYGFMFLYMEKELSSTKTAMGLCVVIGSIGEIIMFPVSHKII
KTVDTIPCLIAGIFSYFLRFLLTSFVTNQWWMLPIQLLHSFGFALFFAAM
MEHVTVISPKEIHTTMVSIVNGLKFGFGILIANMAGGVAYDHFGGGMLFL
MTAFVCLGWVCVMVGYYYGSKLYGKLCGKTENKNKETTERE Run BLAST on NCBI transcript from alignment at sc0000070:447450..448938 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006831 ID=TCONS_00006831|Name=TCONS_00006831|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at sc0000070:447450..448938 (Clytia hemisphaerica)
GTGAGAACATtctccaaaatggtggatagcGAAGCCTCCAACTTTGTAGA
AAAAGATTACAACAATGTTGATACATCCAAAAATCGAAGAATGAATATTC
GTGACATCTTAACACCGGATTTAAACATGATCCCCTCTAAGTTggcttac
ttttttctttttggtgcTCTAGCCTGCTGTGTCCCATACTTCAATGTCTT
CTTAACTTCGTTGGGTCTGACGGCTACTCAAGCTGGTCTTATCACTGGTT
TACGTGCCATTCCTGCATTCATCGGAGCACCTTTATGGGGCATGTTGGCA
GACTTTACtggtcatcacaaaactttatgGATGCTATTATCTTTCACATT
TTTGTCGTTAATTTTTCCAATGCCTTGGATCGCAAAACACGTGAgtaatt
ttgagcttggaaGAAATATAACGTCTTATGAAAACGGCACAAGATCTTAC
AAGGATATCAAGTACTGTACAACAGAATGTGGTGATAACACAATGTTTTA
TATAATGATGGCTGTCATGTTCGCATCAGGATTTGTCGAGTTAAATGTGG
TCTCTTTTCTCGATACTTTTACAATGAATCTAGTTAAGAAAAGCGCTAAG
AAGACTAATTTTGGTCGTCAACGTCTTTTCGGAGCGATTGGGTTCGCATT
GACAAGTTTTCTGGCTGGTGTGGCCATCGATGGGTACCAGGATGACTACC
TATCGGATTATACAGCAACATTTTATGTGTTTCTACCGATGTTTGTGATT
TTTATGCCGATGTCATTTTACGTGGCTCTCAAATCAGAAGATAGACAGAT
TCAGACAGATGTCAATGAGCAAGCTAAAAAATCTCTTTTAAAACCAGTTT
TGAAAACATGTGGAAAAATTCCAAATATCGTTTTCTTGTTATCGGTTTTA
CTCTGTGGAATTTTTCATGGTTTATTGTATGGTTTCATGTTCTTGTACAT
GGAAAAGGAGTTATCGTCAACAAAAACAGCCATGGGGTTGTGTGTCGTAA
TAGGGAGCATCGGAGAAATTATTATGTTTCCTGTATCCcacaaaattatc
aaaactgTCGATACTATCCCGTGTTTAATCGCTGGTATCTTTTCCTATTT
CTTACGATTCTTATTGACGTCGTTCGTCACTAATCAATGGTGGATGCTGC
CAATACAGCTTTTACATAGTTTTGGATTTGCACTTTTTTTTGCTGCCATG
ATGGAACACGTGACGGTCATTTCACCAAAGGAAATTCATACTACAATGGT
CAGTATTGTAAACGGATTGAAATTTGGATTCGGTATTTTGATCGCCAATA
TGGCGGGTGGAGTTGCGTATGATCATTTTGGTGGGGGAATGTTGTTTTTG
ATGACAGCTTTTGTTTGTCTTGGCTGGGTTTGTGTAATGGTTGGTTATTA
TTATGGTTCTAAACTCTATGGAAAACTTTgtggaaaaactgaaaataaga
acaaagaaacAACAGAACGAGAATGATTCCGTATACTAA Coding sequence (CDS) from alignment at sc0000070:447450..448938 >TCONS_00006831 ID=TCONS_00006831|Name=TCONS_00006831|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0000070:447450..448938 (Clytia hemisphaerica)
GTGAGAACATtctccaaaatggtggatagcGAAGCCTCCAACTTTGTAGA
AAAAGATTACAACAATGTTGATACATCCAAAAATCGAAGAATGAATATTC
GTGACATCTTAACACCGGATTTAAACATGATCCCCTCTAAGTTggcttac
ttttttctttttggtgcTCTAGCCTGCTGTGTCCCATACTTCAATGTCTT
CTTAACTTCGTTGGGTCTGACGGCTACTCAAGCTGGTCTTATCACTGGTT
TACGTGCCATTCCTGCATTCATCGGAGCACCTTTATGGGGCATGTTGGCA
GACTTTACtggtcatcacaaaactttatgGATGCTATTATCTTTCACATT
TTTGTCGTTAATTTTTCCAATGCCTTGGATCGCAAAACACGTGAgtaatt
ttgagcttggaaGAAATATAACGTCTTATGAAAACGGCACAAGATCTTAC
AAGGATATCAAGTACTGTACAACAGAATGTGGTGATAACACAATGTTTTA
TATAATGATGGCTGTCATGTTCGCATCAGGATTTGTCGAGTTAAATGTGG
TCTCTTTTCTCGATACTTTTACAATGAATCTAGTTAAGAAAAGCGCTAAG
AAGACTAATTTTGGTCGTCAACGTCTTTTCGGAGCGATTGGGTTCGCATT
GACAAGTTTTCTGGCTGGTGTGGCCATCGATGGGTACCAGGATGACTACC
TATCGGATTATACAGCAACATTTTATGTGTTTCTACCGATGTTTGTGATT
TTTATGCCGATGTCATTTTACGTGGCTCTCAAATCAGAAGATAGACAGAT
TCAGACAGATGTCAATGAGCAAGCTAAAAAATCTCTTTTAAAACCAGTTT
TGAAAACATGTGGAAAAATTCCAAATATCGTTTTCTTGTTATCGGTTTTA
CTCTGTGGAATTTTTCATGGTTTATTGTATGGTTTCATGTTCTTGTACAT
GGAAAAGGAGTTATCGTCAACAAAAACAGCCATGGGGTTGTGTGTCGTAA
TAGGGAGCATCGGAGAAATTATTATGTTTCCTGTATCCcacaaaattatc
aaaactgTCGATACTATCCCGTGTTTAATCGCTGGTATCTTTTCCTATTT
CTTACGATTCTTATTGACGTCGTTCGTCACTAATCAATGGTGGATGCTGC
CAATACAGCTTTTACATAGTTTTGGATTTGCACTTTTTTTTGCTGCCATG
ATGGAACACGTGACGGTCATTTCACCAAAGGAAATTCATACTACAATGGT
CAGTATTGTAAACGGATTGAAATTTGGATTCGGTATTTTGATCGCCAATA
TGGCGGGTGGAGTTGCGTATGATCATTTTGGTGGGGGAATGTTGTTTTTG
ATGACAGCTTTTGTTTGTCTTGGCTGGGTTTGTGTAATGGTTGGTTATTA
TTATGGTTCTAAACTCTATGGAAAACTTTgtggaaaaactgaaaataaga
acaaagaaacAACAGAACGAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006831-exon-sc0000070-1491911889:447450..448938 | TCONS_00006831-exon-sc0000070-1491911889:447450..448938 | Clytia hemisphaerica | exon |
| TCONS_00006831-exon-sc0000070-1510915933:447450..448938 | TCONS_00006831-exon-sc0000070-1510915933:447450..448938 | Clytia hemisphaerica | exon |
| TCONS_00006831-exon-sc0000070-1575043694:447450..448938 | TCONS_00006831-exon-sc0000070-1575043694:447450..448938 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:447450..448938 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006831 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 3.948e-25 Identity = 85/330 (25.76%), Postives = 149/330 (45.15%), Query Frame = -1
Query: 119 NTMFYIMMAVMFASGFVELNVVSFLDTFTMNLVKKSAKKTNFGRQRLFGAIGFALTSFLAGVAIDGYQDDYLSD--------YTATFYVFLPMFVIFMPMSFYVA---------LKSEDRQ------IQTDVNEQAKKSLLKPVLKTCGKIPNIVFLL---------SVLLCGIFHGLLYGFMFLYME---KELSSTKTAMGLCVVIGSIGEIIMFPVSHKIIKTVDTIPCLIAGIFSYFLRFLLTSFVTNQWWMLPIQLLHSFGFALFFAAMMEHVTVISPKEIHTTMVSIVNGLKFGFGILIANMAGGVAYDHFGGGMLFLMTAFVCL 1003
+F +++ V+ F + V+ +DT T+ + K + +G QR++G++G+ L G+ ID + L D Y VF+ +F + M M+ VA K++D + Q + N + S P + + N L+ SVL F G YGF+F ++ ++L+ T T G+C V+ + E+ + SHK+I+ + I L G+ R++ S++ N W +LP+++L A +AA + +++ P E+ T+ I+ GL G G M GGV ++FG F CL
Sbjct: 285 EAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGK--HRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVLIDGKGCKPPEYRNYQIVFI-VFGVLMTMALIVATQFRFRYNHFKNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACL 611
The following BLAST results are available for this feature:
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