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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006826 ID=TCONS_00006826|Name=TCONS_00006826|organism=Clytia hemisphaerica|type=transcript|length=1511bp
aataaatgaataaatgaatATACCTAATATCCCAACATCTCCCCCCAGAT
CACAGCAGGTCCTGCTGGGAACGAACGAacaaaaaacgaacaaaaatcAA
TACAATCAACAGGTGCTATAAGAGCACAGAGAGAATGAAACTCTCATAAT
GTATCAAGGACAAGTCAGTGTCCTGTAACAGTTCATATAGCAAATAAACT
AATGCCATGCTCTAAAAGCACTGAGAGTACAGTATCAAGAGTCTCTTGCA
TAGTCCAATCAGACGGAAAACGTCAAGCATCATAAACATCAAGAAAGTCA
ATGTCACATCAACGTGGCAATTATACAATTCGTTTCATCACATTCATCGT
GGAATAACGTATCGACCAGTTTCAGGCTCGTACACCTTTCTTGGTTGACG
TATGCGTGATGAGCGTCGTGGAGAGACAGTCTCACGAACAACTGACTGCT
CTTTGTTGACGACCGCAGGTGGCTCTGCGATGATAGCCGCAGGTGGCTCT
GCGTTGACAGCTGTGGGTTGAGCAATCGGGGTCATTGGTTGAACAACAGG
ATCCCTCTGAGTTGCTGGAGAAGGCGGAGGTAGTTTGAATGATACATCAG
ACGACGGCTTGGAGGCAACTGGTAGTGGTCCGGCTTGACGTTCTGAACGA
AAGTCGAGTGGCGTATACTTCCGAAGGAATTGTCGGTTCCTCAAACTCAA
TCGACCAGAGCCTGACATTCGAACACGATATTGATCAAAATCTTTCACCT
CCATCACGGTACCTTCACGATCCCAACGTTTAGGGTGGTTGCCGGTCTGG
TTTTGAATGAACACCTTATCTCCGAATTTCAATGGTGCCAAAGGACGAGC
GTGTTGGTTAAGCGATTCCATTGAGCGGATGCAGCGATTCTTCAATGAAC
GTTCTTTTAGGTCCCAAGCGTCTTTCCAACGATTGCTGATCTCGGGGTTG
TCGAAGGCGGAGATGTGTTTGGAGATTGAAGGAAGGGTATCTCTGAGGCG
TCTACCAAACAGAATTTCAGCGGGCGACAATTTACAACCAGCATCGGGCG
TGTTGCGAAGTGTCAACAAGGCACGTACCATCTTGTCTGTGTCAAGGGAA
CCATCGGCGGAAATATTGTTCATCAGAAGGCGTTTGGCGGTCTTGACTGC
AACTTCCGCACGACCATTGGATGATGGGAGATAACTTGAAGAATTGCGGT
GACGAATCCCCCAGCGTTCGAAGAATGACTGAGTTTCGTGTGCTGTGAAT
TCTGGTCCGCCATCACTGGATACTTCTTGTGGTACGCCAAACGTTGCCAT
CAGCTTTCTCAAAGTTGTACATAGCCCTTTGGAGCCAGATGTTGAAGAGC
CCTGGAGGATACGGTAGATCTCGGTCCAACTTGATAGGCGGTCAGCTGTG
ACGAGATAATACCATCCTTTGAACAGGAAGTAGTCGCAGACAATCGCTTC
GAATGGCGTGGTAGGTATGTGTGGTTCGAAAGGTACTGGACGGGCTTGTG
ATGGTGCAATG Run BLAST on NCBI protein sequence of TCONS_00006826-protein >TCONS_00006826-protein ID=TCONS_00006826-protein|Name=TCONS_00006826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
IAPSQARPVPFEPHIPTTPFEAIVCDYFLFKGWYYLVTADRLSSWTEIYR
ILQGSSTSGSKGLCTTLRKLMATFGVPQEVSSDGGPEFTAHETQSFFERW
GIRHRNSSSYLPSSNGRAEVAVKTAKRLLMNNISADGSLDTDKMVRALLT
LRNTPDAGCKLSPAEILFGRRLRDTLPSISKHISAFDNPEISNRWKDAWD
LKERSLKNRCIRSMESLNQHARPLAPLKFGDKVFIQNQTGNHPKRWDREG
TVMEVKDFDQYRVRMSGSGRLSLRNRQFLRKYTPLDFRSERQAGPLPVAS
KPSSDVSFKLPPPSPATQRDPVVQPMTPIAQPTAVNAEPPAAIIAEPPAV
VNKEQSVVRETVSPRRSSRIRQPRKVYEPETGRYVIPR Run BLAST on NCBI transcript from alignment at sc0000070:412795..414305 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006826 ID=TCONS_00006826|Name=TCONS_00006826|organism=Clytia hemisphaerica|type=transcript|length=1511bp|location=Sequence derived from alignment at sc0000070:412795..414305 (Clytia hemisphaerica)
CATTGCACCATCACAAGCCCGTCCAGTACCTTTCGAACCACACATACCTA
CCACGCCATTCGAAGCGATTGTCTGCGACTACTTCCTGTTCAAAGGATGG
TATTATCTCGTCACAGCTGACCGCCTATCAAGTTGGACCGAGATCTACCG
TATCCTCCAGGGCTCTTCAACATCTGGCTCCAAAGGGCTATGTACAACTT
TGAGAAAGCTGATGGCAACGTTTGGCGTACCACAAGAAGTATCCAGTGAT
GGCGGACCAGAATTCACAGCACACGAAACTCAGTCATTCTTCGAACGCTG
GGGGATTCGTCACCGCAATTCTTCAAGTTATCTCCCATCATCCAATGGTC
GTGCGGAAGTTGCAGTCAAGACCGCCAAACGCCTTCTGATGAACAATATT
TCCGCCGATGGTTCCCTTGACACAGACAAGATGGTACGTGCCTTGTTGAC
ACTTCGCAACACGCCCGATGCTGGTTGTAAATTGTCGCCCGCTGAAATTC
TGTTTGGTAGACGCCTCAGAGATACCCTTCCTTCAATCTCCAAACACATC
TCCGCCTTCGACAACCCCGAGATCAGCAATCGTTGGAAAGACGCTTGGGA
CCTAAAAGAACGTTCATTGAAGAATCGCTGCATCCGCTCAATGGAATCGC
TTAACCAACACGCTCGTCCTTTGGCACCATTGAAATTCGGAGATAAGGTG
TTCATTCAAAACCAGACCGGCAACCACCCTAAACGTTGGGATCGTGAAGG
TACCGTGATGGAGGTGAAAGATTTTGATCAATATCGTGTTCGAATGTCAG
GCTCTGGTCGATTGAGTTTGAGGAACCGACAATTCCTTCGGAAGTATACG
CCACTCGACTTTCGTTCAGAACGTCAAGCCGGACCACTACCAGTTGCCTC
CAAGCCGTCGTCTGATGTATCATTCAAACTACCTCCGCCTTCTCCAGCAA
CTCAGAGGGATCCTGTTGTTCAACCAATGACCCCGATTGCTCAACCCACA
GCTGTCAACGCAGAGCCACCTGCGGCTATCATCGCAGAGCCACCTGCGGT
CGTCAACAAAGAGCAGTCAGTTGTTCGTGAGACTGTCTCTCCACGACGCT
CATCACGCATACGTCAACCAAGAAAGGTGTACGAGCCTGAAACTGGTCGA
TACGTTATTCCACGATGAATGTGATGAAACGAATTGTATAATTGCCACGT
TGATGTGACATTGACTTTCTTGATGTTTATGATGCTTGACGTTTTCCGTC
TGATTGGACTATGCAAGAGACTCTTGATACTGTACTCTCAGTGCTTTTAG
AGCATGGCATTAGTTTATTTGCTATATGAACTGTTACAGGACACTGACTT
GTCCTTGATACATTATGAGAGTTTCATTCTCTCTGTGCTCTTATAGCACC
TGTTGATTGTATTgatttttgttcgttttttgtTCGTTCGTTCCCAGCAG
GACCTGCTGTGATCTGGGGGGAGATGTTGGGATATTAGGTATattcattt
attcatttatt Coding sequence (CDS) from alignment at sc0000070:412795..414305 >TCONS_00006826 ID=TCONS_00006826|Name=TCONS_00006826|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at sc0000070:412795..414305 (Clytia hemisphaerica)
ATTGCACCATCACAAGCCCGTCCAGTACCTTTCGAACCACACATACCTAC
CACGCCATTCGAAGCGATTGTCTGCGACTACTTCCTGTTCAAAGGATGGT
ATTATCTCGTCACAGCTGACCGCCTATCAAGTTGGACCGAGATCTACCGT
ATCCTCCAGGGCTCTTCAACATCTGGCTCCAAAGGGCTATGTACAACTTT
GAGAAAGCTGATGGCAACGTTTGGCGTACCACAAGAAGTATCCAGTGATG
GCGGACCAGAATTCACAGCACACGAAACTCAGTCATTCTTCGAACGCTGG
GGGATTCGTCACCGCAATTCTTCAAGTTATCTCCCATCATCCAATGGTCG
TGCGGAAGTTGCAGTCAAGACCGCCAAACGCCTTCTGATGAACAATATTT
CCGCCGATGGTTCCCTTGACACAGACAAGATGGTACGTGCCTTGTTGACA
CTTCGCAACACGCCCGATGCTGGTTGTAAATTGTCGCCCGCTGAAATTCT
GTTTGGTAGACGCCTCAGAGATACCCTTCCTTCAATCTCCAAACACATCT
CCGCCTTCGACAACCCCGAGATCAGCAATCGTTGGAAAGACGCTTGGGAC
CTAAAAGAACGTTCATTGAAGAATCGCTGCATCCGCTCAATGGAATCGCT
TAACCAACACGCTCGTCCTTTGGCACCATTGAAATTCGGAGATAAGGTGT
TCATTCAAAACCAGACCGGCAACCACCCTAAACGTTGGGATCGTGAAGGT
ACCGTGATGGAGGTGAAAGATTTTGATCAATATCGTGTTCGAATGTCAGG
CTCTGGTCGATTGAGTTTGAGGAACCGACAATTCCTTCGGAAGTATACGC
CACTCGACTTTCGTTCAGAACGTCAAGCCGGACCACTACCAGTTGCCTCC
AAGCCGTCGTCTGATGTATCATTCAAACTACCTCCGCCTTCTCCAGCAAC
TCAGAGGGATCCTGTTGTTCAACCAATGACCCCGATTGCTCAACCCACAG
CTGTCAACGCAGAGCCACCTGCGGCTATCATCGCAGAGCCACCTGCGGTC
GTCAACAAAGAGCAGTCAGTTGTTCGTGAGACTGTCTCTCCACGACGCTC
ATCACGCATACGTCAACCAAGAAAGGTGTACGAGCCTGAAACTGGTCGAT
ACGTTATTCCACGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006826-exon-sc0000070-1491911889:412795..414305 | TCONS_00006826-exon-sc0000070-1491911889:412795..414305 | Clytia hemisphaerica | exon |
| TCONS_00006826-exon-sc0000070-1510915933:412795..414305 | TCONS_00006826-exon-sc0000070-1510915933:412795..414305 | Clytia hemisphaerica | exon |
| TCONS_00006826-exon-sc0000070-1575043694:412795..414305 | TCONS_00006826-exon-sc0000070-1575043694:412795..414305 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:412795..414305 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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