TCONS_00006818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006818
Unique NameTCONS_00006818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006818 ID=TCONS_00006818|Name=TCONS_00006818|organism=Clytia hemisphaerica|type=transcript|length=252bp
CTTGAACCACGTGGGGTTTACAGCAATCTCTCAGACAACTGAACCAAAAA
TGTTTCTTAATCGAAATACTTCcacatcaaaacaaaccaaaattttTAGA
GCAGCAAAGTCGCCGGTGGACCACACGACGAAGAAATTTTCTAAACCCAA
TTGTTTTTTCACAATATCAGAGGAGTCATGATGGAtaactaagaacattt
ttctgggTTTCAACAGCTTCTTTTCTCAGGGGAAGAACAGAACccttgtt
tg
Run BLAST on NCBI

transcript from alignment at sc0000070:291439..291690

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006818 ID=TCONS_00006818|Name=TCONS_00006818|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000070:291439..291690 (Clytia hemisphaerica)
caaacaaggGTTCTGTTCTTCCCCTGAGAAAAGAAGCTGTTGAAAcccag
aaaaatgttcttagttaTCCATCATGACTCCTCTGATATTGTGAAAAAAC
AATTGGGTTTAGAAAATTTCTTCGTCGTGTGGTCCACCGGCGACTTTGCT
GCTCTAaaaattttggtttgttttgatgtgGAAGTATTTCGATTAAGAAA
CATTTTTGGTTCAGTTGTCTGAGAGATTGCTGTAAACCCCACGTGGTTCA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003817XLOC_003817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006818-exon-sc0000070-1491911889:291439..291690TCONS_00006818-exon-sc0000070-1491911889:291439..291690Clytia hemisphaericaexon
TCONS_00006818-exon-sc0000070-1510915933:291439..291690TCONS_00006818-exon-sc0000070-1510915933:291439..291690Clytia hemisphaericaexon
TCONS_00006818-exon-sc0000070-1575043694:291439..291690TCONS_00006818-exon-sc0000070-1575043694:291439..291690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:291439..291690 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2285	7.24379	0	0.82286	7.01227	7.91598	5.73018	8.04678	1.25194	2.3261	1.50518	0.989446	1.48211	1.53918	0.421805	2.26331	3.34585	2.85783	2.36894	0.82631	0	1.05096	2.55515	0	5.58283	6.40613	1.01857	1.08705	2.47346	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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