TCONS_00006806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006806
Unique NameTCONS_00006806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006806 ID=TCONS_00006806|Name=TCONS_00006806|organism=Clytia hemisphaerica|type=transcript|length=490bp
TTTCCAGGCAAGGTGATCAATTGGTTGTGATCAAAGCTAGAAAGGATGTA
TCATAACCCATTGAGAATCATTTCACCAAGGAACGATTTGACCAAGAAAA
AAGCAATTCTGATGCAAACAGCAATTCATCAAAACGGTGAGACAAGTCCT
GGAAGTCCAACATCAAGGATAAACAACAAAGACTTACCAGCAAAACAAAT
ACAAAGCGATGTAACAAAAGCTATGAATGTGTCAAATAATACTTCCCAAC
AAAATGGAGACACAGTGCGTAGTTTTGTACCACCTATTCAATTCAACAGG
CTGCCATTTTATTATTATTGTCCTAAAGAGAgagaaaacttcaaaaattt
tagcgAGTTGGTAACTCGGTTTGACTCAATCAATAGAACGAATCGACAAT
GTGGATATGTATTTGCATTCCTGGCCGTAGTTGGTtttgttgtatttttg
ataataatGAAATAAATTGCTAATAAGATATTACTTTCgt
Run BLAST on NCBI

protein sequence of TCONS_00006806-protein

>TCONS_00006806-protein ID=TCONS_00006806-protein|Name=TCONS_00006806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MYHNPLRIISPRNDLTKKKAILMQTAIHQNGETSPGSPTSRINNKDLPAK
QIQSDVTKAMNVSNNTSQQNGDTVRSFVPPIQFNRLPFYYYCPKERENFK
NFSELVTRFDSINRTNRQCGYVFAFLAVVGFVVFLIIMK
Run BLAST on NCBI

transcript from alignment at sc0000070:666292..667310-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006806 ID=TCONS_00006806|Name=TCONS_00006806|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at sc0000070:666292..667310- (Clytia hemisphaerica)
TTTCCAGGCAAGGTGATCAATTGGTTGTGATCAAAGCTAGAAAGGATGTA
TCATAACCCATTGAGAATCATTTCACCAAGGAACGATTTGACCAAGAAAA
AAGCAATTCTGATGCAAACAGCAATTCATCAAAACGGTAAGTTCATTTAT
CATCAATCCTGCAGATCCTCCATTGTGATTGATTTCAGCGTCGTGAATCG
TCTTCTGCCTTTTGTCTTGGAATCTGGCGATCAAAACAGCTGCTGAGAGG
CTGGTTCATTGTGTTACATCTGCGGCTCACATGCAAAGCATACAAATCAC
AACGTCAAAGCCAAATTCATTTAACGTCAATTATAAAAAAATGTGTAGAT
GATTTTTGAGATTAACTGAATTAAACTTTCTTCCTCCGATTTAGCACTTA
TCTGGGGGTTATCTGTTCTAGATTTCCGTATAACTTACATACCTACAATC
TTTGAAATTAGTTTGCGTTTGGGCATTCCCTCCCCCTAAGGCAGTGTGTT
GGTTGAATAAGACCAACCTCGTCTAAAATTACGTCCAATAAAAGCAACAT
TTTGAGTCGGGGGCCTGGGGTATATGAGCTGAAATGTCCCACAATTTTTG
AAGATGATTGTAGGTAGAATATATTCATACCCGATTTTATTTTTAATCTT
TTCATTTTACTGCAGGTGAGACAAGTCCTGGAAGTCCAACATCAAGGATA
AACAACAAAGACTTACCAGCAAAACAAATACAAAGCGATGTAACAAAAGC
TATGAATGTGTCAAATAATACTTCCCAACAAAATGGAGACACAGTGCGTA
GTTTTGTACCACCTATTCAATTCAACAGGCTGCCATTTTATTATTATTGT
CCTAAAGAGAGAGAAAACTTCAAAAATTTTAGCGAGTTGGTAACTCGGTT
TGACTCAATCAATAGAACGAATCGACAATGTGGATATGTATTTGCATTCC
TGGCCGTAGTTGGTTTTGTTGTATTTTTGATAATAATGAAATAAATTGCT
AATAAGATATTACTTTCGT

Coding sequence (CDS) from alignment at sc0000070:666292..667310-

>TCONS_00006806 ID=TCONS_00006806|Name=TCONS_00006806|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000070:666292..667310- (Clytia hemisphaerica)
GTGAGACAAGTCCTGGAAGTCCAACATCAAGGATAAACAACAAAGACTTA
CCAGCAAAACAAATACAAAGCGATGTAACAAAAGCTATGAATGTGTCAAA
TAATACTTCCCAACAAAATGGAGACACAGTGCGTAGTTTTGTACCACCTA
TTCAATTCAACAGGCTGCCATTTTATTATTATTGTCCTAAAGAGAGAGAA
AACTTCAAAAATTTTAGCGAGTTGGTAACTCGGTTTGACTCAATCAATAG
AACGAATCGACAATGTGGATATGTATTTGCATTCCTGGCCGTAGTTGGTT
TTGTTGTATTTTTGATAATAATGAAATAAATGTATCATAACCCATTGAGA
ATCATTTCACCAAGGAACGATTTGACCAAGAAAAAAGCAATTCTGATGCA
AACAGCAATTCATCAAAACGGTGAGACAAGTCCTGGAAGTCCAACATCAA
GGATAAACAACAAAGACTTACCAGCAAAACAAATACAAAGCGATGTAACA
AAAGCTATGAATGTGTCAAATAATACTTCCCAACAAAATGGAGACACAGT
GCGTAGTTTTGTACCACCTATTCAATTCAACAGGCTGCCATTTTATTATT
ATTGTCCTAAAGAGAGAGAAAACTTCAAAAATTTTAGCGAGTTGGTAACT
CGGTTTGACTCAATCAATAGAACGAATCGACAATGTGGATATGTATTTGC
ATTCCTGGCCGTAGTTGGTTTTGTTGTATTTTTGATAATAATGAAATAAA
TGTATCATAACCCATTGAGAATCATTTCACCAAGGAACGATTTGACCAAG
AAAAAAGCAATTCTGATGCAAACAGCAATTCATCAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003806XLOC_003806Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006806-proteinTCONS_00006806-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006806-exon-sc0000070-1575043694:667175..667310TCONS_00006806-exon-sc0000070-1575043694:667175..667310Clytia hemisphaericaexon
TCONS_00006806-exon-sc0000070-1575043694:666292..666645TCONS_00006806-exon-sc0000070-1575043694:666292..666645Clytia hemisphaericaexon
TCONS_00006806-exon-sc0000070-1510915933:667175..667310TCONS_00006806-exon-sc0000070-1510915933:667175..667310Clytia hemisphaericaexon
TCONS_00006806-exon-sc0000070-1510915933:666292..666645TCONS_00006806-exon-sc0000070-1510915933:666292..666645Clytia hemisphaericaexon
TCONS_00006806-exon-sc0000070-1491911889:667175..667310TCONS_00006806-exon-sc0000070-1491911889:667175..667310Clytia hemisphaericaexon
TCONS_00006806-exon-sc0000070-1491911889:666292..666645TCONS_00006806-exon-sc0000070-1491911889:666292..666645Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:666292..667310 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126255	0.246238	0.142953	0	0	0	0	0	0	0	0	0	0	0	0	0	0.758235	0.680021	0	0	0.488283	0.535877	0.144762	0.526438	0.542219	1.33077	0	0	0	0.142774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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