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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006804 ID=TCONS_00006804|Name=TCONS_00006804|organism=Clytia hemisphaerica|type=transcript|length=2251bp
aagcactcttttgtgattttctcatAATGTAATATAGTCTGGTCTGTAGT
ATGTATTCACACTttgattttcatctttttggTATTAATACTAATTTAGG
GGTCTACACATCACACAGCTACCATCAAATGATTAAAATTTTTGTGGATT
AGCTTTGGTGATTTTTCACAAATAGgttgttcgccttgaaattagTCATG
ATTGAAAATCATTCCGTGTGTAAATATTaatcatcatttttttacataca
aaactttttcttcaattgTGACCCTCGTGCATTCTAGGTTGATTTTCTTA
TAGTTATTAAGGTTTGGATTAAAAATTGAACCAAAGGGAAAATTAACAAG
TTCATCTTATTTGTTTCCCATCTTATACTGAAGACAACTGAGAGCAATAA
TGGATACTGTTGAATCAATGGAAAAATCGCCAGCTAGAAATGGCCCTTTA
AGCAATAGGATTGTgcattttgatttgaaaggtGCTCCACCCAAAATAAG
TTATTTATTGGAATTGATTCCACTAGTCAGGCAATGGGGTGCTACTGGAA
TCTTGGTTGAATATGAAGATATGTTTCCTTACAAAAACAAACTCAGTGTT
CTCTCAAAACCGTTTGCCTATAGCTCAgacgacttgaaacttttgCAAGA
AGCCACAAAGTTAGAAGGGATGGATTATATTCCTTTACTTCAATCCTTTG
GACACGTTGAATTTATTCTAAAGCATCATCAGTTTGAGCATCTCCGTGAG
GCATCAATAAATCCAATGTCGTTATGTCCAAAGCATGTGGAATCATTACC
ACTGATTGAGGAAATAGTGGACCAGTTTATGCAAGAACATCCTGATATCG
AGTACCTTCATATTGGTGGTGATGAAGTATTTTGCATCAATGTTTGTAAA
AAGTGTGTTGATTCTCGAGACTCGATACCAAAACTCTATTTGAGTCATAT
GGAGCCATTGATACTGTTTATCCAAAACAAGTTTCCAACTTTAAAGCTTT
TTGTATGGGATGATATGTTTCGAGAATTTTCCGTGCAAGAGCTTGAAGAG
CTAAGCCCTCAGATAATTCCCATGGTCTGGTCATATGTAGACTATCTGGA
CTCCCAATTTCCGAATGATATGTGGAGACGATACGGAAGTGTATTCGAGG
AAATTTGGATAGCTACTTCTTTTAAAGGTTCTTCAGGACCTACTTGTGAT
CTTGTACCTATTCAGCATCATGTAAACAACCATTTGTCATGGTTTAACCT
GATTGAGAGTTTTGACCAAGAATTAAAAGTAAAGATCAAAGGAGTTGCTG
TAACAGGTTGGTCACGGTATGATCATTTTGCAACATTATGTGAATTGCTA
CCAGCAGCTTTTCCATGTTTAGTTTTATGTTTACAAGTATTAAGACAAGG
GTCCTTTACTAGGACTCTGCACGAGAACGTTTCAAAATCTCTTGGCTATG
TAAATGCAATTCCATTATCTGGATATTTTAATGAGAATGGAACTGGTAAT
TTTCCTGGTTCAGAACTAATTGGATACATCTGTCAGCTTGAGTTTGCCAA
GCGACAACTGTTAGTTCTACAAGAACGATCAGATGGTTGGATGGATGATT
GGCACACAGAAGTGACACAGGAGGTCAATCTTGGACATATTGATTTCATT
TATAACCTTGTAACACAAATTATTCAGCTCTATGAATCCATCCGGGGCCC
AATTCAAGAATGTTTGTCCACATATTTCTATGAAGAAACTGCACTGGAAG
TTGTAAAATCAAAGATTGATAGCAAATTGAAAGTGATTAATCTTATAATG
GACAAAGTACAAACTGTCAAATCATTCAAAGATAAATAATTGACCCAGTC
TTAGATTTTATGCATCAATAATCTTTTGAAGTTATCCagtattaaaagtt
tttttttcatcaattgaTAAGCACACTAGGCAATAGAGTGAATACCTATT
ACTTTTGGGGCTTTTTTGTACAGCTTATCAATATTGTCTATACAAAAGCT
CTCTAATTTTGGACTTACTAAGgggtattttgaatattttcattacGCCT
AAACTATCAGAAAGGCATTTCTCCTGTCATTTGTATTACATTTTACACTT
TTATATAAAGTTTACatttttttaattttgtttttgctaCTTCTATTAGT
GATCAgacttatttttgtttttaggttGAAGaattttaaaactgaaaatt
tagatttgTATAATTAAAAGGATTGGTATTAAAAATGACAACTAAGTATT
A Run BLAST on NCBI protein sequence of TCONS_00006804-protein >TCONS_00006804-protein ID=TCONS_00006804-protein|Name=TCONS_00006804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MDTVESMEKSPARNGPLSNRIVHFDLKGAPPKISYLLELIPLVRQWGATG
ILVEYEDMFPYKNKLSVLSKPFAYSSDDLKLLQEATKLEGMDYIPLLQSF
GHVEFILKHHQFEHLREASINPMSLCPKHVESLPLIEEIVDQFMQEHPDI
EYLHIGGDEVFCINVCKKCVDSRDSIPKLYLSHMEPLILFIQNKFPTLKL
FVWDDMFREFSVQELEELSPQIIPMVWSYVDYLDSQFPNDMWRRYGSVFE
EIWIATSFKGSSGPTCDLVPIQHHVNNHLSWFNLIESFDQELKVKIKGVA
VTGWSRYDHFATLCELLPAAFPCLVLCLQVLRQGSFTRTLHENVSKSLGY
VNAIPLSGYFNENGTGNFPGSELIGYICQLEFAKRQLLVLQERSDGWMDD
WHTEVTQEVNLGHIDFIYNLVTQIIQLYESIRGPIQECLSTYFYEETALE
VVKSKIDSKLKVINLIMDKVQTVKSFKDK Run BLAST on NCBI transcript from alignment at sc0000070:609657..611985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006804 ID=TCONS_00006804|Name=TCONS_00006804|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at sc0000070:609657..611985- (Clytia hemisphaerica)
AAGCACTCTTTTGTGATTTTCTCATAATGTAATATAGTCTGGTCTGTAGT
ATGTATTCACACTTTGATTTTCATCTTTTTGGTATTAATACTAATTTAGG
GGTCTACACATCACACAGCTACCATCAAATGATTAAAATTTTTGTGGATT
AGCTTTGGTGATTTTTCACAAATAGGTTGTTCGCCTTGAAATTAGTCATG
ATTGAAAATCATTCCGTGTGTAAATATTAATCATCATTTTTTTACATACA
AAACTTTTTCTTCAATTGTGACCCTCGTGCATTCTAGGTTGATTTTCTTA
TAGTTATTAAGGTTTGGATTAAAAATTGAACCAAAGGGAAAATTAACAAG
TTCATCTTATTTGTTTCCCATCTTATACTGAAGACAACTGAGAGCAATAA
TGGATACTGTTGAATCAATGGAAAAATCGCCAGCTAGAAATGGCCCTTTA
AGCAATAGGATTGTGCATTTTGATTTGAAAGGTGCTCCACCCAAAATAAG
TTATTTATTGGAATTGATTCCACTAGTCAGGCAATGGGGTGCTACTGGAA
TCTTGGTTGAATATGAAGATATGTTTCCTTACAAAAACAAACTCAGTGTT
CTCTCAAAACCGTTTGCCTATAGCTCAGACGACTTGAAACTTTTGCAAGA
AGCCACAAAGTTAGAAGGGATGGATTATATTCCTTTACTTCAATCCTTTG
GACACGTTGAATTTATTCTAAAGCATCATCAGTTTGAGCATCTCCGTGAG
GCATCAATAAATCCAATGTCGTTATGTCCAAAGCATGTGGAATCATTACC
ACTGATTGAGGAAATAGTGGACCAGTTTATGCAAGAACATCCTGATATCG
AGTACCTTCATATTGGTGGTGATGAAGTATTTTGCATCAATGTTTGTAAA
AAGTGTGTTGATTCTCGAGACTCGATACCAAAACTCTATTTGAGTCATAT
GGAGCCATTGATACTGTTTATCCAAAACAAGTTTCCAACTTTAAAGCTTT
TTGTATGGGATGATATGTTTCGAGAATTTTCCGTGCAAGAGCTTGAAGAG
CTAAGCCCTCAGATAATTCCCATGGTCTGGTCATATGTAGACTATCTGGA
CTCCCAATTTCCGAATGATATGTGGAGACGATACGGAAGTGTATTCGAGG
AAATTTGGATAGCTACTTCTTTTAAAGGTTCTTCAGGACCTACTTGTGAT
CTTGTACCTATTCAGCATCATGTAAACAACCATTTGTCATGGTTTAACCT
GATTGAGAGTTTTGACCAAGAATTAAAAGTAAAGATCAAAGGAGTTGCTG
TAACAGGTTGGTCACGGTATGATCATTTTGCAACATTATGTGAATTGCTA
CCAGCAGCTTTTCCATGTTTAGTTTTATGTTTACAAGTATTAAGACAAGG
GTCCTTTACTAGGACTCTGCACGAGAACGTTTCAAAATCTCTTGGCTATG
TAAATGCAATTCCATTATCTGGATATTTTAATGAGAATGGAACTGGTAAT
TTTCCTGGTTCAGAACTAATTGGATACATCTGTCAGCTTGAGTTTGCCAA
GCGACAACTGTTAGTTCTACAAGAACGATCAGATGGTTGGATGGATGATT
GGCACACAGAAGTGACACAGGAGGTCAATCTTGGACATATTGATTTCATT
TATAACCTTGTAACACAAATTATTCAGCTCTATGAATCCATCCGGGGCCC
AATTCAAGAATGTTTGTCCACATATTTCTATGAAGAAACTGCACTGGAAG
TTGTAAAATCAAAGATTGATAGCAAATTGAAAGTGATTAATCTTATAATG
GACAAAGTACAAACTGTCAAATCATTCAAAGATAAATAATTGACCCAGTC
TTAGATTTTATGCATCAATAATCTTTTGAAGTTATCCAGTATTAAAAGTT
TTTTTTTCATCAATTGATAAGCACACTAGGCAATAGAGTGAATACCTATT
ACTTTTGGGGCTTTTTTGTACAGCTTATCAATATTGTCTATACAAAAGCT
CTCTAATTTTGGACTTACTAAGGGGTATTTTGAATATTTTCATTACGCCT
AAACTATCAGAAAGGCATTTCTCCTGTCATTTGTATTACATTTTACACTT
TTATATAAAGTTTACATTTTTTTNTAAACTATCAGAAAGGCATTTCTCCA
GTCATTTGTATTACATTTTACACTTTTATATTTAAAAGTTTACATTTTTT
TAATTTTGTTTTTGCTACTTCTATTAGTGATCAGACTTATTTTTGTTTTT
AGGTTGAAGAATTTTAAAACTGAAAATTTAGATTTGTATAATTAAAAGGA
TTGGTATTAAAAATGACAACTAAGTATTA Coding sequence (CDS) from alignment at sc0000070:609657..611985- >TCONS_00006804 ID=TCONS_00006804|Name=TCONS_00006804|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000070:609657..611985- (Clytia hemisphaerica)
ATGGATACTGTTGAATCAATGGAAAAATCGCCAGCTAGAAATGGCCCTTT
AAGCAATAGGATTGTGCATTTTGATTTGAAAGGTGCTCCACCCAAAATAA
GTTATTTATTGGAATTGATTCCACTAGTCAGGCAATGGGGTGCTACTGGA
ATCTTGGTTGAATATGAAGATATGTTTCCTTACAAAAACAAACTCAGTGT
TCTCTCAAAACCGTTTGCCTATAGCTCAGACGACTTGAAACTTTTGCAAG
AAGCCACAAAGTTAGAAGGGATGGATTATATTCCTTTACTTCAATCCTTT
GGACACGTTGAATTTATTCTAAAGCATCATCAGTTTGAGCATCTCCGTGA
GGCATCAATAAATCCAATGTCGTTATGTCCAAAGCATGTGGAATCATTAC
CACTGATTGAGGAAATAGTGGACCAGTTTATGCAAGAACATCCTGATATC
GAGTACCTTCATATTGGTGGTGATGAAGTATTTTGCATCAATGTTTGTAA
AAAGTGTGTTGATTCTCGAGACTCGATACCAAAACTCTATTTGAGTCATA
TGGAGCCATTGATACTGTTTATCCAAAACAAGTTTCCAACTTTAAAGCTT
TTTGTATGGGATGATATGTTTCGAGAATTTTCCGTGCAAGAGCTTGAAGA
GCTAAGCCCTCAGATAATTCCCATGGTCTGGTCATATGTAGACTATCTGG
ACTCCCAATTTCCGAATGATATGTGGAGACGATACGGAAGTGTATTCGAG
GAAATTTGGATAGCTACTTCTTTTAAAGGTTCTTCAGGACCTACTTGTGA
TCTTGTACCTATTCAGCATCATGTAAACAACCATTTGTCATGGTTTAACC
TGATTGAGAGTTTTGACCAAGAATTAAAAGTAAAGATCAAAGGAGTTGCT
GTAACAGGTTGGTCACGGTATGATCATTTTGCAACATTATGTGAATTGCT
ACCAGCAGCTTTTCCATGTTTAGTTTTATGTTTACAAGTATTAAGACAAG
GGTCCTTTACTAGGACTCTGCACGAGAACGTTTCAAAATCTCTTGGCTAT
GTAAATGCAATTCCATTATCTGGATATTTTAATGAGAATGGAACTGGTAA
TTTTCCTGGTTCAGAACTAATTGGATACATCTGTCAGCTTGAGTTTGCCA
AGCGACAACTGTTAGTTCTACAAGAACGATCAGATGGTTGGATGGATGAT
TGGCACACAGAAGTGACACAGGAGGTCAATCTTGGACATATTGATTTCAT
TTATAACCTTGTAACACAAATTATTCAGCTCTATGAATCCATCCGGGGCC
CAATTCAAGAATGTTTGTCCACATATTTCTATGAAGAAACTGCACTGGAA
GTTGTAAAATCAAAGATTGATAGCAAATTGAAAGTGATTAATCTTATAAT
GGACAAAGTACAAACTGTCAAATCATTCAAAGATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006804-exon-sc0000070-1575043694:609871..611985 | TCONS_00006804-exon-sc0000070-1575043694:609871..611985 | Clytia hemisphaerica | exon |
| TCONS_00006804-exon-sc0000070-1575043694:609657..609792 | TCONS_00006804-exon-sc0000070-1575043694:609657..609792 | Clytia hemisphaerica | exon |
| TCONS_00006804-exon-sc0000070-1510915933:609871..611985 | TCONS_00006804-exon-sc0000070-1510915933:609871..611985 | Clytia hemisphaerica | exon |
| TCONS_00006804-exon-sc0000070-1510915933:609657..609792 | TCONS_00006804-exon-sc0000070-1510915933:609657..609792 | Clytia hemisphaerica | exon |
| TCONS_00006804-exon-sc0000070-1491911889:609871..611985 | TCONS_00006804-exon-sc0000070-1491911889:609871..611985 | Clytia hemisphaerica | exon |
| TCONS_00006804-exon-sc0000070-1491911889:609657..609792 | TCONS_00006804-exon-sc0000070-1491911889:609657..609792 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:609657..611985 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015883 | Glyco_hydro_20_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00006804 vs. Swiss-Prot (Human)
Match: HEXDC (Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3) HSP 1 Score: 295.819 bits (756), Expect = 1.334e-90 Identity = 156/470 (33.19%), Postives = 258/470 (54.89%), Query Frame = 1
Query: 445 PLSNRIVHFDLKGAPPKISYLLELIPLVRQWGATGILVEYEDMFPYKNKLSVLSKPFAYSSDDLKLLQEATKLEGMDYIPLLQSFGHVEFILKHHQFEHLREASINPMSLCPKHVESLPLIEEIVDQFMQEHPDIEYLHIGGDEVFCINVCKKCV----DSRDSIPKLYLSHMEPLILFIQNKFPTLKLFVWDDMFREFSVQELEELS-PQII-PMVWSYVDYLDSQFPNDMWRRYGSV-FEEIWIATSFKGSSGPTCDLVPIQHHVNNHLSWFNLIESFDQELKVKIKGVAVTGWSRYDHFATLCELLPAAFPCLVLCLQVLRQGSFTRTLHENVSKSLGYVNAIPLSGYFNENGTGNFPGSELIGYICQLEFAKRQLLVLQERSDGWMDDWHTEVTQEVNLGH---IDFIYNLVTQIIQLYESIRGPIQECLSTYFYEETALEVVKSKIDSKLKVINLIMDKVQTVKS 1824
P R+VH DLKGAPPK+SYL E+ PL R GA G+L+EYEDMFPY+ L +L +AYS ++K + L ++ IPL+Q+FGH+EF+LKH F HLRE P +L P ESL L+ ++DQ ++ HP + LHIG DEV+ + + ++S KL LSHM + ++ + P++ VWDDM R+ +L PQ++ P++W Y LD + ++Y F ++W A++FKG++GP+ + P++HH+ NH+ W + S + ++G+ +TGW RYDH++ LCELLPA P L CLQ+L +G F + V LG ++++ + E G G+FPGS ++ + Q+ R + + ++ W + ++ L H + I ++ + ++ ++ L FY + E ++ + L+ + ++ + V +
Sbjct: 6 PFQMRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTGKLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGKVLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTD---SLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLG-ISSLEKTDPVRE-GAGSFPGSNILALVTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTLVQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEVSA 470
The following BLAST results are available for this feature:
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