TCONS_00006797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006797
Unique NameTCONS_00006797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006797 ID=TCONS_00006797|Name=TCONS_00006797|organism=Clytia hemisphaerica|type=transcript|length=1396bp
AGCGATTGGACATCGTGGTCCTCGTGTGAAAACAATCAGATGAATCGAAC
ACGTTTTTGTAACGATCCTGCACCAATTCCAGCTAATTATTTGACTCGAT
GTTATGGTCTTGATCAACAATTAAAATCCAGTGAAACTCAGTATTGTACA
GATTGTTCAGGCTGTGTCTtacAATCACACATCACGTGGATCGACGGTGG
CACCACACAATACGAATCAGTTGATGAAAACATGCCACCACTTCAATACG
TCCATCGTGTCAATACCGTCAAAGTGTGCCATAGTGTGCAATTCCGAATT
CAAGGCGGTGATGAACATGGGcaattttttattgataatacGGGCCGTAT
CTACACCTCGACGCTCTTGGATCATGAAACAAAATCGCATTACAGCCTGA
GTATCAGTGTTTACTATGACAACGATGTAAACAAGATTGCAACACCTAAT
GATCCTATTGTGAACATTACAGTTAATGATATGAACGAAGCTCCATATTT
CAACACAATACATTACCAAATTCATATCTGCTACGAGCCGGTCTTTAATG
AATCCATTGATCATGTGACTGCTCTTGATCAAGATGCAAATTTCACCAAT
AATGTATATACTGGAAATTCAACAATGGATGATGTATTTTATATCAACGA
AACAGGACACATCTTGAAGGGACATAAAGATTTAAGATTGGTTGACGCTG
ATGAGTTTTTGATCATGGTCCAAGCATTTGATGCGTCAGATGCAACTCTG
GCGAGTACTTTGGTTCCTGTACATATTCATTGGTGTGACGTCAACATTCC
TGAATTCGTACAACCATTAACTCGTAACTTCAGTATTATTGAGAATGACG
AATCTTTCGTTTACCAAGTCCAAACCACAACTGCAGATGAACATTTTTAT
ATTGTAGAAGGGAAtgaaaatgattattttcaCCTCACTGAGAAAGATGG
TAATCTTACGATAAAAAATCCTCCTGATCGTGAAATAAATGATTTTGCAC
GGTTAATCGTCCAAGCAATAAGTCTTTTTGGGAACGGTGTAAAATCTACA
GCAAACCTGACACTCAATTTCCATATTCTTGACACCAATGATAACATACC
TCAGATCACCTCAATAAATGATCCAAGGATATTTTATACAAATGTAACTT
ACATTAATGCCACATTTCCAGCTTTTAACGCTACAGATCCGGATCTTGGT
AACAATGGTACTTTAACTTATGAAATTACGTGGAATCAATTGATTTTTCC
ATCTGTCTCTTTTTTACCTACTGGACAGCTCCGAGTAAATGGTCAGTTTA
ACATATCGATGAACATGCATATATATGTCAGTGTTTGCGATCAAGGATTA
CCACCAAAATGTCAGTCCGCCTATATTGGGCTCAGAATCGACAGAT
Run BLAST on NCBI

protein sequence of TCONS_00006797-protein

>TCONS_00006797-protein ID=TCONS_00006797-protein|Name=TCONS_00006797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp
SDWTSWSSCENNQMNRTRFCNDPAPIPANYLTRCYGLDQQLKSSETQYCT
DCSGCVLQSHITWIDGGTTQYESVDENMPPLQYVHRVNTVKVCHSVQFRI
QGGDEHGQFFIDNTGRIYTSTLLDHETKSHYSLSISVYYDNDVNKIATPN
DPIVNITVNDMNEAPYFNTIHYQIHICYEPVFNESIDHVTALDQDANFTN
NVYTGNSTMDDVFYINETGHILKGHKDLRLVDADEFLIMVQAFDASDATL
ASTLVPVHIHWCDVNIPEFVQPLTRNFSIIENDESFVYQVQTTTADEHFY
IVEGNENDYFHLTEKDGNLTIKNPPDREINDFARLIVQAISLFGNGVKST
ANLTLNFHILDTNDNIPQITSINDPRIFYTNVTYINATFPAFNATDPDLG
NNGTLTYEITWNQLIFPSVSFLPTGQLRVNGQFNISMNMHIYVSVCDQGL
PPKCQSAYIGLRIDR
Run BLAST on NCBI

transcript from alignment at sc0000070:502958..510579-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006797 ID=TCONS_00006797|Name=TCONS_00006797|organism=Clytia hemisphaerica|type=transcript|length=7622bp|location=Sequence derived from alignment at sc0000070:502958..510579- (Clytia hemisphaerica)
AGCGATTGGACATCGTGGTCCTCGTGTGAAAACAATCAGATGAATCGAAC
ACGTTTTTGTAACGATCCTGCACCAATTCCAGCTAATTATTTGACTCGAT
GTTATGGTCTTGATCAACAATTAAAATCCAGTGAAACTCAGTATTGTACA
GATTGTTCAGGCTGTGTCTGTAAGTTTGTTTTCATTTTGTTAAGAAATAG
ACTAAATCAAGTATTAAATCATTTTTCCCGGGCCATTGTCATTCAGATTA
TATGAAAAGATGAAATTCAGGAAACTGTTTGCCATACCGATAATGTGTTG
GCATTGGAATTGATTCTTGTCATCAGATGGAGCATGAAAACGGAAAAAAT
ATTTACTTACAACAAGTCTTGTACTCAAACACACTAAAGGTAATGGTCAA
GTTCGAAATCCTGTCAAATCTTTTACGTTTTGACTACTACTACTATCTTC
AAACTTCAAAATTTGACTTCTCCGTATGGCAGAATTCTGAACCTCAAATG
CCTGTATCTCAACTTGATGTTGTACACTTCATTGATCAGAACTTTAGTCT
CTATCCGATTATTTTCATTGAATTCAACTTTGAAAATTTGCAAGGCCTTT
CTGACGTGCTAAAATCTACTTTCGAACTAATCACACGTACTCTTAGGTGT
CAAATAAACGGGGGCGTTCGAATAAACGGAGGGGGGTTGGAAAGTTTTCG
AAATTTTAATAAACGGGGCGGGGGAGACCTAATTGCCGGGGGGGTTTGAA
ATTGTACTTCTGAAAACCCCAAAATAAGGTAAATATAGGCTAAAATCAGG
CTTTTTGGAGCAAAATAAGGGGACTTTTGCCAACTGAAAATATTCTTAAA
AATTAATAAATGGGGGTCCTAAAAAGGTCTGAGGGGTTGGAAAATTAACA
AGCGGGGGGGGGGCGTTTATTTGGCACCTAAGAGTAGCCGGATTCCGTCG
GATTCAAGTCACAGAATTTTAACTCTTCGAACATCTTCCTATTTTTTACT
AGGGGAGCATCTTAGGGGGAGGGGCTTGAGCCCCCCTTAATATCTTAAGA
TTGAAAAGTGCTATGACCTTGAAATTTAATGATTTACAAAATTTTGGTTC
GGCCACCTATATGGTTGGTATTTTGCAGACCAAAATGTAAACTTGACCAA
AATCATGTATTGGCTGATTGACTCGTTTGATTTGACTGAAATTTGTTCCT
GAAGGCTGATTTGTCAAATAAAAGAGAATACTAACTGAAAAAAGTCGTTG
CCATGAGTATTTGATACTTTGCACACCGGTCTGTAGAATACTAGTTGACC
AGCTGCCGGAACTCGGGAACTAATTAAAAGTTTGAAATTTTCACAAGTGA
TAGATATTTACCATCTAAGACAATGTAAAAAACAGGTGGAAAAAAATTGA
CCCTCTGCCCCAAAAAAACATGTCGTGTAGAGTAGACTGGCACGCCAGTC
GGGCTGGAACGGTATCACGCGGGAAAAGTGAGCGTAGGAGTTAGGTAAGC
GTAGGAAGAAATTTTGTCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATTGGAAGTGCTAC
AAACTTTTGTGAATATCTACCTGGTTATCCCTTTGTTTTGAGTTTAATAC
GTACTGTATCTATCCCTATGATAAAATTACCCAGTTTTGAGGAGAAATAA
AGTCATGGTAAAGCGGCACTGACAAATTTCTCCAAAAAATATTTTCTTTC
AAATTATGAAATATTAAAAGTCTTCTTACATCTAAAAATGATTAAATTTT
TTCGCCATGCTTATGTTTTACTCAATTCTAGTATTTTTTCCAAAACTTAT
ATATACCTACGTAGAGGGAAAATTAAAGAATTCTCAGTTTGGCAACAAAA
ATTTCTCAAACGTACTGTACACATAGTACCTACTATAACTTTAAACATTT
ACATATTTTTAAATTGCCAGATTAGTGTGGCAAGAACAAGTGGATTTTTC
ATTCAGCCATAAATCTTCAAGTGTGAAGTTAATTTTATAGTACACATACT
TACAATTTACAGAAAAATGGGTGATAAGTATATGTCACATGTTCAACAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTGACAATCCACTTGTTCGACAATCTATATAGTTGTTCAACAGACCAG
TTGTTTGAGAGAAGAGTGTCGAACAAGTGGTCGTCGAACAACCATGCAGT
CGAGCAAATAGGTGTCGAACTAGTAACTGTCAAACAACCGGTCTAACAAA
TGTACCGTTGGACAAGTATACTGTCGAACAAGTGGGATTTCCCCAAAATT
ATAGTTGTACGTAGATGAAAATTTGTCAGAATTTATATTACGGTGAAAAT
TCAGAATTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AAAATTAGTGTGGCAAGAAAACTCCCAAAAAAATTTAGCCATAAATCTTA
AAGTGTAAGGTTAATTTTTCAGCATTTTTGGTGTGACAAGAAAATTCTTC
AGTGCATAGCCACAGTCTATAGAAAAGGTCAGAATTTACAATAATTCTCT
TCTCATGACAAAAATACTGCATTTTTCTAAAATCATGAATACGTGTACCC
AAAAACTTTTCTGTCACCATATAGACTCTGGATTTTCTACCAGAGCTATC
TTATCACAGCACTAAATTCTGCAAATTTCAATTTTTCACAAATTAAATTT
GTACATGACAGATGTTACATTTTTCATTCGACAGACTGAAAAACTTAATT
ATAATAATACACTTATAATAATAATTATGCACCAATGTGTCATTGTTTTG
AGGTTGGAGTTTTAGTTTAAGTTATTCAAAATATGACATCTTAACTATTA
AAAGTAAGTACTTTTCTGTAAGTTTTCCATTTAATTTTCTATGTGTACGT
GTAATTTTCCTGTGCTTGGCTGGTACGTTACATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGT
AATGACATTGAGAGTGATGAGAGGGATAATCTTTGGAGTTTCTTTAAACT
AACCAGGAAACGCTGTTTATTCTCACGATAACCTAAAAATAGTTTTCAAA
CTGTACCAAAAAAGTTTTTTCTTGTAAACCTGTGTTAGATTATCGTGAGA
TATTAAAAGTGTCAGAATTATTGATTATTATGATATGTTATTATTCTTAA
AATAGTGTCAAAATTTTTTCAAAAAGGTTATTTTGTGGGGTACTTTTGAG
CAGAGTTCCTGCCTGGTTAGTGTTACTGTTGTATTCATAGAAAAGAGTGT
TGGAGGGGTTCACTTAGCCACAATGAGACTAGAGTAATCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCCACAAT
GAGACTAGAGTAATCAAGTTCCTTAACAAGTAGTCTGTAAGTACTAAAAT
AAAAAGCAAAAAGTATTTAGGTGGAACCAAAATAGAAAAAATATTTCTTA
CCTTGAATCCTAGGCTAGCAAAAAGCCACCAACCTGCATAGGGAAAACTG
AATAATCCTTGTACGCTTTTGATGATTGTAGAAAACTGAAGCTAAATTGC
AAATACTTACCTTTCTAAGAATGTATGAATAACAAAAACAACTANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCACCAACTTT
TGCTCGCTCTCCTACGCAGCTCCTATTTTAGCAAACGCCCGCCGCCTTTA
TGTTCCCGCCCTCTGACATGATTAATTTACAGACTAGTTTGCTAGTCTAC
GTGTAGAGTTACCTCACAAGATTTGGGCAAAAAAATTAAAGCGAAAAAAA
AGTTAGAGGGTTTTTCGGTTTTTCGGTATTTTTAAAGAATGATGACATCA
ATGATGCTGAAATTTTCACCAATGATGCCGATTCATATTTGGGTGCACGC
AAAATGTCAAATCAATTCGATAAATATTTGAAAAATTATACAAAAACTTC
ATTCTAGGGAGTTGCCCCCTCCCTGAGATGCTTGAAGGGTTAATGTACAT
TTTTTAAATTTTAGTACAATCACACATCACGTGGATCGACGGTGGCACCA
CACAATACGAATCAGTTGATGAAAACATGCCACCACTTCAATACGTCCAT
CGTGTCAATACCGTCAAAGTGTGCCATAGTGTGCAATTCCGAATTCAAGG
CGGTGATGAACATGGGCAATTTTTTATTGATAATACGGGCCGTATCTACA
CCTCGACGCTCTTGGATCATGAAACAAAATCGCATTACAGCCTGAGTATC
AGTGTTTACTATGACAACGATGTAAACAAGATTGCAACACCTAATGATCC
TATTGTGAACATTACAGTTAATGATATGAACGAAGCTCCATATTTCAACA
CAATACATTACCAAATTCATATCTGCTACGAGCCGGTCTTTAATGAATCC
ATTGATCATGTGACTGCTCTTGATCAAGATGCAAATTTCACCAATAATGT
ATATACTGGAAATTCAACAATGGATGATGTATTTTATATCAACGAAACAG
GACACATCTTGAAGGGACATAAAGATTTAAGATTGGTTGACGCTGATGAG
TTTTTGATCATGGTCCAAGCATTTGATGCGTCAGATGCAACTCTGGCGAG
TACTTTGGTTCCTGTACATATTCATTGGTGTGACGTCAACATTCCTGAAT
TCGTACAACCATTAACTCGTAACTTCAGTATTATTGAGAATGACGAATCT
TTCGTTTACCAAGTCCAAACCACAACTGCAGATGAACATTTTTATATTGT
AGAAGGGAATGAAAATGATTATTTTCACCTCACTGAGAAAGATGGTAATC
TTACGATAAAAAATCCTCCTGATCGTGAAATAAATGATTTTGCACGGTTA
ATCGTCCAAGCAATAAGTCTTTTTGGGAACGGTGTAAAATCTACAGCAAA
CCTGACACTCAATTTCCATATTCTTGACACCAATGATAACATACCTCAGA
TCACCTCAATAAATGATCCAAGGATATTTTATACAAATGTAACTTACATT
AATGCCACATTTCCAGCTTTTAACGCTACAGATCCGGATCTTGGTAACAA
TGGTACTTTAACTTATGAAATTACGTGGAATCAATTGATTTTTCCATCTG
TCTCTTTTTTACCTACTGGACAGCTCCGAGTAAATGGTCAGTTTAACATA
TCGATGAACATGCATATATATGTCAGTGTTTGCGATCAAGGATTACCACC
AAAATGTCAGTCCGCCTATATTGGGCTCAGTAAGTTTCACCTTTCCTCCT
TTGTTGAAGTTTTAAACCTACTTCCCATTTTGTCTTTTTTCGTCAGGACC
AATCTGGTTTTCGATACTAATTAAGAAGGATTTTCGCCGACAAAATATTA
CATATTCAACTTTAATGAATTCGATCATTCATTTAAAGTGATTACTATCA
GTGCTAAAGACCTCCATTATTTTTTTACCTCCCCAAGTCTTTCCAAGGCA
GGGTTACAAAAACAACAAAAAGTCTCTCTCCTCACTTACATAATTTATCC
ACTTGAAAGTGATGGCATTGTCATATCTATCCACTTGTCGTTTGCCAATT
GAATCATTTTAAGTCCACTGTTTTTTCGATGACCTTATTAAGTGTTTTTC
GTTGTCGACCTCGGATTTTTTTGAGAATTTTCTCTCTTAGGGTAAGTTTT
CGCAAAAACTGTTAGTTTCTCTAATTGTCGGTTTTCAGAGGTTTGATCCG
CACATACCTGACATTTATCAACTCTAACAGGAAATTTGAGATATATGATA
CGAGCCCTCAGAATACATTCGGGATGTGTCCTACCCATGAAGTAGTAGGA
ATCACGGCGCTGACAGACACTGTGACTTGGCAGACGTGAGCTGTAAAGCC
ATGGCGTATACCATGACACTCGAACGACACTGGGAGAGCGATGCTCACGT
GAGGCCGAACCTTATGAGTGCCATGGCACGTCGCAATGTCTATATAATCT
ATCCACACTCTTGTATCAGAGTAATGGTATCCAATTCTCCTCACATGGCA
TGGGTTGCCCCGGGCGAAGGTATATTCACTTGCCAAGTGAATCGTAGAGA
TATGGGGAGTATCGAACTCAGGCCTCCCAGGCGAGAGTCAGGGATGATAA
CCACTATACCACTACGCTTATACGGGAAATTTGATGCGTTCAATAATCTT
CATTTTGTAGGAATCGACAGAT

Coding sequence (CDS) from alignment at sc0000070:502958..510579-

>TCONS_00006797 ID=TCONS_00006797|Name=TCONS_00006797|organism=Clytia hemisphaerica|type=CDS|length=4185bp|location=Sequence derived from alignment at sc0000070:502958..510579- (Clytia hemisphaerica)
GAATCGACAGATACAATCACACATCACGTGGATCGACGGTGGCACCACAC
AATACGAATCAGTTGATGAAAACATGCCACCACTTCAATACGTCCATCGT
GTCAATACCGTCAAAGTGTGCCATAGTGTGCAATTCCGAATTCAAGGCGG
TGATGAACATGGGCAATTTTTTATTGATAATACGGGCCGTATCTACACCT
CGACGCTCTTGGATCATGAAACAAAATCGCATTACAGCCTGAGTATCAGT
GTTTACTATGACAACGATGTAAACAAGATTGCAACACCTAATGATCCTAT
TGTGAACATTACAGTTAATGATATGAACGAAGCTCCATATTTCAACACAA
TACATTACCAAATTCATATCTGCTACGAGCCGGTCTTTAATGAATCCATT
GATCATGTGACTGCTCTTGATCAAGATGCAAATTTCACCAATAATGTATA
TACTGGAAATTCAACAATGGATGATGTATTTTATATCAACGAAACAGGAC
ACATCTTGAAGGGACATAAAGATTTAAGATTGGTTGACGCTGATGAGTTT
TTGATCATGGTCCAAGCATTTGATGCGTCAGATGCAACTCTGGCGAGTAC
TTTGGTTCCTGTACATATTCATTGGTGTGACGTCAACATTCCTGAATTCG
TACAACCATTAACTCGTAACTTCAGTATTATTGAGAATGACGAATCTTTC
GTTTACCAAGTCCAAACCACAACTGCAGATGAACATTTTTATATTGTAGA
AGGGAATGAAAATGATTATTTTCACCTCACTGAGAAAGATGGTAATCTTA
CGATAAAAAATCCTCCTGATCGTGAAATAAATGATTTTGCACGGTTAATC
GTCCAAGCAATAAGTCTTTTTGGGAACGGTGTAAAATCTACAGCAAACCT
GACACTCAATTTCCATATTCTTGACACCAATGATAACATACCTCAGATCA
CCTCAATAAATGATCCAAGGATATTTTATACAAATGTAACTTACATTAAT
GCCACATTTCCAGCTTTTAACGCTACAGATCCGGATCTTGGTAACAATGG
TACTTTAACTTATGAAATTACGTGGAATCAATTGATTTTTCCATCTGTCT
CTTTTTTACCTACTGGACAGCTCCGAGTAAATGGTCAGTTTAACATATCG
ATGAACATGCATATATATGTCAGTGTTTGCGATCAAGGATTACCACCAAA
ATGTCAGTCCGCCTATATTGGGCTCAAGCGATTGGACATCGTGGTCCTCG
TGTGAAAACAATCAGATGAATCGAACACGTTTTTGTAACGATCCTGCACC
AATTCCAGCTAATTATTTGACTCGATGTTATGGTCTTGATCAACAATTAA
AATCCAGTGAAACTCAGTATTGTACAGATTGTTCAGGCTGTGTCTGAATC
GACAGATACAATCACACATCACGTGGATCGACGGTGGCACCACACAATAC
GAATCAGTTGATGAAAACATGCCACCACTTCAATACGTCCATCGTGTCAA
TACCGTCAAAGTGTGCCATAGTGTGCAATTCCGAATTCAAGGCGGTGATG
AACATGGGCAATTTTTTATTGATAATACGGGCCGTATCTACACCTCGACG
CTCTTGGATCATGAAACAAAATCGCATTACAGCCTGAGTATCAGTGTTTA
CTATGACAACGATGTAAACAAGATTGCAACACCTAATGATCCTATTGTGA
ACATTACAGTTAATGATATGAACGAAGCTCCATATTTCAACACAATACAT
TACCAAATTCATATCTGCTACGAGCCGGTCTTTAATGAATCCATTGATCA
TGTGACTGCTCTTGATCAAGATGCAAATTTCACCAATAATGTATATACTG
GAAATTCAACAATGGATGATGTATTTTATATCAACGAAACAGGACACATC
TTGAAGGGACATAAAGATTTAAGATTGGTTGACGCTGATGAGTTTTTGAT
CATGGTCCAAGCATTTGATGCGTCAGATGCAACTCTGGCGAGTACTTTGG
TTCCTGTACATATTCATTGGTGTGACGTCAACATTCCTGAATTCGTACAA
CCATTAACTCGTAACTTCAGTATTATTGAGAATGACGAATCTTTCGTTTA
CCAAGTCCAAACCACAACTGCAGATGAACATTTTTATATTGTAGAAGGGA
ATGAAAATGATTATTTTCACCTCACTGAGAAAGATGGTAATCTTACGATA
AAAAATCCTCCTGATCGTGAAATAAATGATTTTGCACGGTTAATCGTCCA
AGCAATAAGTCTTTTTGGGAACGGTGTAAAATCTACAGCAAACCTGACAC
TCAATTTCCATATTCTTGACACCAATGATAACATACCTCAGATCACCTCA
ATAAATGATCCAAGGATATTTTATACAAATGTAACTTACATTAATGCCAC
ATTTCCAGCTTTTAACGCTACAGATCCGGATCTTGGTAACAATGGTACTT
TAACTTATGAAATTACGTGGAATCAATTGATTTTTCCATCTGTCTCTTTT
TTACCTACTGGACAGCTCCGAGTAAATGGTCAGTTTAACATATCGATGAA
CATGCATATATATGTCAGTGTTTGCGATCAAGGATTACCACCAAAATGTC
AGTCCGCCTATATTGGGCTCAAGCGATTGGACATCGTGGTCCTCGTGTGA
AAACAATCAGATGAATCGAACACGTTTTTGTAACGATCCTGCACCAATTC
CAGCTAATTATTTGACTCGATGTTATGGTCTTGATCAACAATTAAAATCC
AGTGAAACTCAGTATTGTACAGATTGTTCAGGCTGTGTCTGAATCGACAG
ATACAATCACACATCACGTGGATCGACGGTGGCACCACACAATACGAATC
AGTTGATGAAAACATGCCACCACTTCAATACGTCCATCGTGTCAATACCG
TCAAAGTGTGCCATAGTGTGCAATTCCGAATTCAAGGCGGTGATGAACAT
GGGCAATTTTTTATTGATAATACGGGCCGTATCTACACCTCGACGCTCTT
GGATCATGAAACAAAATCGCATTACAGCCTGAGTATCAGTGTTTACTATG
ACAACGATGTAAACAAGATTGCAACACCTAATGATCCTATTGTGAACATT
ACAGTTAATGATATGAACGAAGCTCCATATTTCAACACAATACATTACCA
AATTCATATCTGCTACGAGCCGGTCTTTAATGAATCCATTGATCATGTGA
CTGCTCTTGATCAAGATGCAAATTTCACCAATAATGTATATACTGGAAAT
TCAACAATGGATGATGTATTTTATATCAACGAAACAGGACACATCTTGAA
GGGACATAAAGATTTAAGATTGGTTGACGCTGATGAGTTTTTGATCATGG
TCCAAGCATTTGATGCGTCAGATGCAACTCTGGCGAGTACTTTGGTTCCT
GTACATATTCATTGGTGTGACGTCAACATTCCTGAATTCGTACAACCATT
AACTCGTAACTTCAGTATTATTGAGAATGACGAATCTTTCGTTTACCAAG
TCCAAACCACAACTGCAGATGAACATTTTTATATTGTAGAAGGGAATGAA
AATGATTATTTTCACCTCACTGAGAAAGATGGTAATCTTACGATAAAAAA
TCCTCCTGATCGTGAAATAAATGATTTTGCACGGTTAATCGTCCAAGCAA
TAAGTCTTTTTGGGAACGGTGTAAAATCTACAGCAAACCTGACACTCAAT
TTCCATATTCTTGACACCAATGATAACATACCTCAGATCACCTCAATAAA
TGATCCAAGGATATTTTATACAAATGTAACTTACATTAATGCCACATTTC
CAGCTTTTAACGCTACAGATCCGGATCTTGGTAACAATGGTACTTTAACT
TATGAAATTACGTGGAATCAATTGATTTTTCCATCTGTCTCTTTTTTACC
TACTGGACAGCTCCGAGTAAATGGTCAGTTTAACATATCGATGAACATGC
ATATATATGTCAGTGTTTGCGATCAAGGATTACCACCAAAATGTCAGTCC
GCCTATATTGGGCTCAAGCGATTGGACATCGTGGTCCTCGTGTGAAAACA
ATCAGATGAATCGAACACGTTTTTGTAACGATCCTGCACCAATTCCAGCT
AATTATTTGACTCGATGTTATGGTCTTGATCAACAATTAAAATCCAGTGA
AACTCAGTATTGTACAGATTGTTCAGGCTGTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003799XLOC_003799Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006797-proteinTCONS_00006797-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006797-exon-sc0000070-1575043694:510411..510579TCONS_00006797-exon-sc0000070-1575043694:510411..510579Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1575043694:503901..505115TCONS_00006797-exon-sc0000070-1575043694:503901..505115Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1575043694:502958..502969TCONS_00006797-exon-sc0000070-1575043694:502958..502969Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1510915933:510411..510579TCONS_00006797-exon-sc0000070-1510915933:510411..510579Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1510915933:503901..505115TCONS_00006797-exon-sc0000070-1510915933:503901..505115Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1510915933:502958..502969TCONS_00006797-exon-sc0000070-1510915933:502958..502969Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1491911889:510411..510579TCONS_00006797-exon-sc0000070-1491911889:510411..510579Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1491911889:503901..505115TCONS_00006797-exon-sc0000070-1491911889:503901..505115Clytia hemisphaericaexon
TCONS_00006797-exon-sc0000070-1491911889:502958..502969TCONS_00006797-exon-sc0000070-1491911889:502958..502969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:502958..510579 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0896657	0.116584	0.0338414	0.0331085	0	0	0.0384265	0	0	0.0311976	0.0605623	0.0199056	0.417437	0.350939	0	0	0.0673117	0.0689924	0.158861	0.598452	0.115592	0.296004	0	0.0311561	0.705981	0.315036	0.286882	0.131215	0.066348	0.033799
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002126Cadherin
IPR015919Cadherin-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0007156homophilic cell adhesion via plasma membrane adhesion molecules
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00006797 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.026e-17
Identity = 109/388 (28.09%), Postives = 172/388 (44.33%), Query Frame = 1 
Query:  259 VNTVKVCHSVQFRIQGGDEHGQFFIDN-TGRIYTSTLLDHETKSHYSLSISVYYDNDVNKIATPNDPIVNITVNDMNE-APYFNTIHYQIHICYEPVFNESIDHVTALDQDANFTNNV-YTGNSTMDDVFYINET-GHI-LKGHKDLRLVDADEFLIMVQAFDASDATLASTLV-PVHIHWCDVNIPEFVQPLTRNFSIIEND--ESFVYQVQTTTADE------HFYIVEGNENDYFHLTEKDGNLTIKNPPDREINDFARLIVQAISLFGNGVKSTANLTLNFHILDTNDNIPQITSINDPRIFYTNVTYINATFPA-FNATDPDLGNNGTLTYEITWNQLIFPSVSFLPTGQLRVNGQFNISMNMH--------IYVSVCDQGLP 1353
             +T+ +  ++ + I  GD+ G F I+  TG++ T+ ++D E +S Y L +        +      D +VNITV D+N+ +P+F      +++        SI    A+D D      V Y+      ++F INE  G I L G  D   V A  + I + A D     L+S+++  V++H  + N P F Q L+   ++ E++   S  ++VQ +  D        + I EGN  D F +   DG L IK+  DRE+ D   L+V A       + +T N+T+     D NDN P   S N    FY        +F    +A D D G NG + Y     Q  F   +   +G++    QF+    M           V   DQG+P
Sbjct:  817 ASTMDLNSNISYLITTGDQKGMFAINQVTGQLTTANVIDREEQSFYQLKVVA------SGGTVTGDTMVNITVKDLNDNSPHFLQAIESVNVVENWQAGHSIFQAKAVDPDEGVNGMVLYSLKQNPKNLFAINEKNGTISLLGPLD---VHAGSYQIEILASDMGVPQLSSSVILTVYVHDVNDNSPVFDQ-LSYEVTLSESEPVNSRFFKVQASDKDSGANGEIAYTIAEGNTGDAFGIF-PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILE--DVNDNRPLFNSTN--YTFYFEEEQRAGSFVGKVSAVDKDFGPNGEVRYSFEMVQPDFELHAI--SGEITNTHQFDRESLMRRRGTAVFSFTVIATDQGIP 1187
The following BLAST results are available for this feature:
BLAST of TCONS_00006797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT41.026e-1728.09Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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