TCONS_00006794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006794
Unique NameTCONS_00006794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1007

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006794 ID=TCONS_00006794|Name=TCONS_00006794|organism=Clytia hemisphaerica|type=transcript|length=1007bp
GAAGTATTGTATCTAtgtaattccaaaattttctttgacGGAGGAACATG
GGTCAGAAGCCATCAAGCAAAGTCTATTGGAATGAATCGTACGACACATT
ATACCCACCATCCTCTGCTTCCTCCTTCACACTACCGATGCAAATCAACG
ATCGGCTTATTGCACGTTCCCGATCGGGATCCATAGAAACCACGTCATCA
CAAGGACTTCAACCACCCTTCATGGGACCAAACTCAAAGAGACGGAAAGC
TCCTGATAAATCAAGATCTAGCTCCTCGGCTTCGAATAGTTCCAGAGCTT
CACGAACAGGAAGTGGGGCTAGTGACGGATCATATTACGTCCCACGGGCT
GCGCGGTACAACAGTCCAACGTACGATTACCGAGAGAGTGGCTattttca
tgacgtcataagAGCGAAACAAGTGGAATTTGAACGTGAAGGGATAGCTT
ACGACGAACCTGACGATTATAATGATGGACACGCTCATACGAATCAAGGT
CATTCTCCACCATATAAAGAAGAAAACGTTCCAACAAAGAATTTCACATA
CATGGATGTCAATGATATCGCTTTCACCAGGAAAGGATCGCCCATATTCT
TCGAGGTTGACCCTGAAGTTCCCAGCAACATGCAAAAACGTCCTGTCACT
GGACCTGGACTTGAATCTGATCCCGCAATCGTTGACCCGCAAAAAGGCAC
ACCCGAAACAGCTACCCTCGAAACTGACTTACCGGCTTATTAAAGTAAAG
TATAGAATTTAATGCACAATATTTCTTATTACCTTGTATGGCACCTTTGA
TACTTAAAAAAGAACGGCACGTTATATTATAGAATTTGACCTAAATTACA
TAAACAATCATGGTCTAAATAAATTGAGATTTTTGtgcattttaacgttt
ttcagccATTTAAAGTCCGGGCGAGAATAGTTATTTTAGCatttccactt
tctttcattgaatatttcgattttggaggggttccGTTGcctctaggcta
tattcca
Run BLAST on NCBI

transcript from alignment at sc0000070:451396..457562-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006794 ID=TCONS_00006794|Name=TCONS_00006794|organism=Clytia hemisphaerica|type=transcript|length=6167bp|location=Sequence derived from alignment at sc0000070:451396..457562- (Clytia hemisphaerica)
GAAGTATTGTATCTATGTAATTCCAAAATTTTCTTTGACGGAGGAACATG
GGTCAGAAGCCATCAAGCAAAGTGTATGTAACATGATATTTTTGCCTATT
TTTCGAAACATCGTATATCGGTATGATCGGCTGGCATTGTTATTAAGAAG
TTATATCAGGGCATGTCTTATTAGTCCAGATGATTTAGTTGAAATCTCAC
TCTCTGAAACATGGAAAATTGAATTCCCAACAAACTAAAACTTGGTAAAG
CACTTTCTCTACTAGAAAAAAATCGTCGATAGGGCGCTAACGAAGGATCG
TTGGAAGGGGTGGATGATTTCTTCATATATCACCACCTCTAATTTCTTGA
GCTTCAGTATGCTGCAGTAAAGTGTCGGCTTGTTGGGGCTTTCATCCACG
TAAAACACCAATAGTCGGGCTATACCAAAGATTATCAAAATGGTACTTGA
TGCATCTCTGCTTGATGCTCAGCAATTAAGAGAAGGGTCAGGAGTAAGAG
GAGCAATCCAGGGAGAAAGTGTGGCGCGCTCCCCTACCTTCGGGTAGCCA
TAGCTATCGAAAAAGGAGCCTTTGGGTCGCCTCCGAATGCAGTCACAGAC
TTACTTACTCACTTACTGCAGTTATATCTCTGATGCAGGGTTTTGAGTGT
ATGATTTGGAGGCAGATATTGATACAGGTTAGCTTTGGCGGGAGGGATTA
GTGTCAATGATGATATGGTTTTCTTTACCCCCCTTATCCCCCTATTATTA
GCTGGAACTAAAATAAGAAAATCTTTTAGCCTTCATCATTTGCTATTATC
AGAAAAAATTTGCCGTGAGGCCTGCGCTCTTCGATTCCATTTTTAAATTC
ATCTCCATACCTACTTTAATTTCTTTAGCTATTGGAATGAATCGTACGAC
ACATTATACCCACCATCCTCTGCTTCCTCCTTCACACTACCGATGCAAAT
CAACGATCGGCTTATTGCACGTTCCCGATCGGGATCCATAGAAACCACGT
CATCACAAGGACTTCAACCACCCTTCATGGGACCAAACTCAAAGAGACGG
AAAGCTCCTGATAAATCAAGATCTAGCTCCTCGGCTTCGAATAGTTCCAG
AGCTTCACGAACAGGAAGTGGGGCTAGTGACGGATCATATTACGTCCCAC
GGGCTGCGTGAGTTTATTTTCTTCTTTCAGTGTTTAAAAATCTTATGTTT
CAGACTGACTTTCGTCTCAGCAAGACGTATATTCAAGCCGTACAAACATT
CGCGAAAAGGTCGGAAACGGTCGCGAAAAGGTCGGAAACGGTCGAAAATA
TTATAAGGGGCATTCGCGAAAGTTTATGCACGCGAAAAATTGTCGACAAA
ATAGAAAATATGTAAAACTAGCCGGTACCCGGCGTCGCACGCCGGTTAAG
CTGTAGCTGACACACTAAAAGTCCTTTGGATGTTGAAGCTGGCTTAAAAA
ATGATCAAATTAATAAAAAGATATCTTCAAAGTTTGACTCTAACCAGTGG
CGGCCTGGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGACCTG
AGAGGGGCGCCAAAAAAGCTTTTCAAGGGGGCGAAACATTCNTGACTCTA
ATCAGTGGCGGCCTGGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGA
AAGACCTGAGAGGGGCGCCAAAAAAGCTTTTCAAGGGGGCGAAACATTCG
CCAAAATTCTTTTTGATGTTTAGTTGGGCGATTTTGCGATCTTTGACACG
TTTTAAGCGCCTTCTATAAGTGCAATGTAAGTTTTATTTTACGATTTCAA
AACTACTATCAACATTGAATTGCGAAAAGTCAAAGCAAGAGAAGTGTTAT
GTATCCACCAGGGGTTAAAGAGGATGCTCACCCCCAAAATGAGAGATTGA
TCGAAACTGCTCGCTGTGGTTTTTGTGGTCTTATGCGAACTAACTTTCTC
CTTTTTAGAATATCTTATAAGCTGTTTGACCTTTCTTACACCAAATTTTT
TTGCCTGCGGCGCCAGAATTACAAACATCCCTTATTCTTGCCAACTTGTT
GAATTTTAGGGGGCCTCTTTCAGCCATTGATCTTTAATCGAGAGTAAAGT
AAGACCAGGAAATAACAAGGAAATAGATATCAAATTATCATTACCACTTA
CACCACCTTCGTATAAATAAAAGTTTGTTAACTCAGGGATTCCGGGCGTT
ACTTTCAACCAGTCACTGCTCTTACAGTTTAATAGTTTCACTTAATGGTA
TAGGGCGCAAATAAGGACAAAAAAACCAGGGGCGCCAATTTCATAGTTTG
CACCACCAAGACAATTAAGCCAGGCCGCTACTGACTCTAACCCTCGAACC
CTCCCCCGGAGATCTTTTTCTCGCTTCGCTCGCATTAAATACGCCGTCCA
GCTTTCGACAATTTGAGAAAATGTCATGGTAAAGAGGAGTGAAATGTAGA
CATGACAATTCTTTATGAAAAAGCGGGAAAGCCACAAAGAATAGTGCAAC
TTTCGAACTTTGTTTTTATCAGATTTAAAAAGGTAAATAAGTCAATTCTA
AATTGCTTTTTTTAAAACTTTTTAATTTTCATGTTTTGATTTACATTTGA
AATGTTCTTTTCTATAAAAGAAACTTGTTTTGTTTTGAAAAGAATTCGAA
TGTCATTAATAAATACGATCGTTAAATACATTCGCGAAAATATTTCAAAC
AAAAGAAAAGAAAAAACAGGATCGGCCAAAGCTGGGCAGAAATTAAAATT
ACTAAATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGAACAAAGTCT
AAACCATGCTCTATTCGATCTGTCAATCAAAGCAAACTTATCGAGAACAA
AACATTGCTTGCGAAATAGAAAGTGTGCAAATCGCGCGAATCCAATAGAA
CAAATTTGTGGAGCAAGAGACTAAAAGTCATAATTTTAAAACACAAACAA
AGCGAAAACGAAAGTGGTGACACACAGACACACAAAGCACCGCTATTAAT
ATATAGACTTCTGACTTAAAATTAAATGTGGGATTTATGGTGTCTTTTAG
CCTGTTAAAGCCTCGTGAGTCAAAAGACAAATTTTTCAACCCATGTCAAG
AAGTATTTGTCCTTCGAAACCATCTTTTCTTGTGAAAATATTCATTTTTA
TGTCTTGATTCACGAAGGTTTATGCTCGCGAGAAGGATTTCTTTTCAAAT
TCGCAGAAGTAAATTTATTCCGGTAAATTTTGCGATTTTCAGACCCCGCT
AAGGTTTCTGCTCGCAAGTTTGTACGCCAAAAGTAGGCTTTCCATCTCAA
TTTTCAGTGAAACTTTATATGAAACATGAATCTTGGTGTGTTAATAAATT
TTCCATCCAATGATTATAAAGAGTCACGCATAAGAGCCTTTCCTGGAGAA
AAAAAACGAGACACTCAATTCTTTTCATTTCAGGCGGTACAACAGTCCAA
CGTACGATTACCGAGAGAGTGGCTATTTTCATGACGTCATAAGGTAAGAA
TTTTAACACACACCCCCTTTTTGAGCCATTGGGGGTAAAAGTAACGGACT
GAAACTCGATGGGGATTGATATTCCCATGTTTTTCATGAATTCCATTATT
TTCGAGTCAGAAGATTTAGTGGGGATGTAGAGTGGATCTCCAGAGTTTAC
TTTGATATTTTTTGATAATAAAACATATCAGAGGAAATGTGTGCAGCCTA
GTGGGGATTGAGAAACTAGCACAAATTTGTTTTCAGTGAGGATCTGCTCA
TCTGATTATTTTCAGCGTGGACAAAAATAAGAGTACGATGAAGAATTAAT
TGCCAAATAGAAACTCTGAAAAACCTTATTATGCTATTGACTTGTTTGAA
GCAAACAGTACAACCTTTAAAAGTTCACCTCTAATGGTTTTAACTAATTT
CTTACCCTAATGAAAAGCCATAAAAATCACAAAATCAGGCGTATCTATTG
TGACACCCTGTTTCACAGCCTCGGTGGAACTTTTTCCTAAAAGCGGGAAT
AAAAAGTGTCTACTGAAATTCCAATCGGGATGAAAATTCTATTGTGCCAA
GGTTAAAAAATCCAGCGTGACGGTTTTGGAGTGCAATATCTAAACATTGA
ATTTCGAATGGGGATAAAATTAAAGTAATTTTCCCAATGGAGCTAAAATT
CTAGGATATTTTTCCCACCGGGAACGAAATTTTTGCCAAATTTTCTAGTG
GGGTGGTGGTCCCAGCGGGTCTGTAACACAGGGGTGTATTGTGAAAGGAC
GGTTAAGTAAATCAGGCCTTGGTGCTTTAAGACTTCTCGGTAATTCAAAT
ATTTGTAATCTTCAATTTATTACAGAGCGAAACAAGTGGAATTTGAACGT
GAAGGGATAGCTTACGACGAACCTGACGATTATAATGATGGACACGCTCA
TACGAATCAAGGTAGAGTTTTATAGATATATCATACTTTCTCTTAACTAC
CACTCTCCAATATACAACTCAATATCCACATAAAGGCCATCCCTAAAGTT
TCAGATATTTTCTTGAAAATGATGTGCGAAAACCTCTTTGGAGAAAATAA
AAATTTTTAGAACACCTGGAAACTTTTCTTAAAAATTTGAATACGGGGAT
GGAGGATATAGCATTTTTTGAAAATCTACCCCCACCCCCGGACATTGTGA
ATTTTGTCTCCCGGACAACAAATCTTACCCCCCAAACAAGCATCAGTTGA
CCCCACAGACATTTAAAATCACACCTCTGATCAGAGCAAGTTTTCCTCAA
AACAAAGCAAGTATTGCAGATTTTTCACTACCCCTGGACAAAATATCCAA
TATATCCTCCACCCCATGTACAAATATTTTCTGGCTGAGCCCAATGCATC
CTAAAAATGTTCATCCCTTTGATTTAAGTATAAAAAATGTCAACATTGAA
TTTTCATGTAATGACAATTTCTCCGTGTACACAATTTTTTTCGTTATAAG
CACTACTTCTTTATCAAGCTCTCAGAATGCTTAACATTCCATTTTTCTTA
AACAATCGAGCCATTTTTAGGTATCAAGAACTGAGCCTGCATATGCTTAT
AAACGTTATGCTTATAGAAATCTTTTCTTTTTCTTCGTTTAGGTCATTCT
CCACCATATAAAGAAGAAAACGTTCCAACAAAGAATTTCACATACATGGA
TGTCAATGATATCGCTTTCACCAGGAAAGGATCGCCCATATTCTTCGAGG
TTGACCCTGAAGGTTGGTACTTTCCCTTTCAGCCGCCCACACGCCCTTTT
TTATTTATTTCTTATCTACGTGTTTACATAACACGAACCTCTATAACTCG
AACAAGTTTTTTCTTCCCTTAAGTTAACAAGGACTGCGGAGTGACTAAAA
ACTGAACAACCCGCAGTTCTGACCCACAAAATCGGGGATATGGTGAAAAT
GTACTGATTTATCGTCGTTCTTAGTCAAGTCAAGGTGTAAATAAATCATA
GCTAACCGTCTCTGTCACAGCAAAAAACACACTTACACGCTTTTTTTATA
AGAATAACTTCTATAAAAATGTCGTTAAGATGTAATAAAAGAATCTTATT
ACTTTTTCTAAAGAACGCGTCATCTCTATCACTTTAAATGACCAATTAGT
GAAGTATCTTGTAAAATCTCCAGCTCATCCCGAGATTTCAGAGTCAGCAC
AATAGGCCTTTTGTTTAGAACAATAGGAAAATAAGAATACTGCTCACCCT
CAGCCAAAGAACACTATTTTTATTAAAAAAGCCATCGTTTCAGATTCCCA
ATAAATTTACTTTCCATATTTCTTTCAGTTCCCAGCAACATGCAAAAACG
TCCTGTCACTGGACCTGGACTTGAATCTGATCCCGCAATCGTTGACCCGC
AAAAAGGCACACCCGAAACAGCTACCCTCGAAACTGACTTACCGGCTTAT
TAAAGTAAAGTATAGAATTTAATGCACAATATTTCTTATTACCTTGTATG
GCACCTTTGATACTTAAAAAAGAACGGCACGTTATATTATAGAATTTGAC
CTAAATTACATAAACAATCATGGTCTAAATAAATTGAGATTTTTGTGCAT
TTTAACGTTTTTCAGCCATTTAAAGTCCGGGCGAGAATAGTTATTTTAGC
ATTTCCACTTTCTTTCATTGAATATTTCGATTTTGGAGGGGTTCCGTTGC
CTCTAGGCTATATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003797XLOC_003797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006794-exon-sc0000070-1575043694:457490..457562TCONS_00006794-exon-sc0000070-1575043694:457490..457562Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1575043694:456406..456684TCONS_00006794-exon-sc0000070-1575043694:456406..456684Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1575043694:454070..454129TCONS_00006794-exon-sc0000070-1575043694:454070..454129Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1575043694:453152..453237TCONS_00006794-exon-sc0000070-1575043694:453152..453237Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1575043694:452351..452470TCONS_00006794-exon-sc0000070-1575043694:452351..452470Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1575043694:451396..451784TCONS_00006794-exon-sc0000070-1575043694:451396..451784Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:457490..457562TCONS_00006794-exon-sc0000070-1510915933:457490..457562Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:456406..456684TCONS_00006794-exon-sc0000070-1510915933:456406..456684Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:454070..454129TCONS_00006794-exon-sc0000070-1510915933:454070..454129Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:453152..453237TCONS_00006794-exon-sc0000070-1510915933:453152..453237Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:452351..452470TCONS_00006794-exon-sc0000070-1510915933:452351..452470Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1510915933:451396..451784TCONS_00006794-exon-sc0000070-1510915933:451396..451784Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:457490..457562TCONS_00006794-exon-sc0000070-1491911889:457490..457562Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:456406..456684TCONS_00006794-exon-sc0000070-1491911889:456406..456684Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:454070..454129TCONS_00006794-exon-sc0000070-1491911889:454070..454129Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:453152..453237TCONS_00006794-exon-sc0000070-1491911889:453152..453237Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:452351..452470TCONS_00006794-exon-sc0000070-1491911889:452351..452470Clytia hemisphaericaexon
TCONS_00006794-exon-sc0000070-1491911889:451396..451784TCONS_00006794-exon-sc0000070-1491911889:451396..451784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:451396..457562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.48304	3.40108e-07	1.86476	1.08526	0.941634	5.93673	5.34385	11.0282	11.0962	6.21613	8.37257	3.27883	3.56278	0.45531	0.472273	1.66787	2.74117	4.69717	3.80407	4.03061	4.09091	2.07838	1.94091	1.68993e-07	3.14255	2.65164	0.348779	1.64973	1.49375
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top