TCONS_00006784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006784
Unique NameTCONS_00006784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006784 ID=TCONS_00006784|Name=TCONS_00006784|organism=Clytia hemisphaerica|type=transcript|length=259bp
TTTGCGCTCACGATTCAATTCAGACTGTAGTTGCTCATGTTTCCCTCTTA
ATGTTTCGATTAAATCTTTTGAACTGTTCTCCATGGTCACTGTACGAACA
CTGTTCTTGATATCTTGTGCTGTAGCAGTTTCCAACTTTTGTTCCTGTTC
TGGCTGCTTCTTCTTCTCTGGTTCTTTCCTTTTCTCACATTTCCTCAATT
TATCTTTGTGAACATCCTTCAATAAAGAAAGCAATTGTTTTGACCAATGA
AGTATCTTT
Run BLAST on NCBI

transcript from alignment at sc0000070:322763..328633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006784 ID=TCONS_00006784|Name=TCONS_00006784|organism=Clytia hemisphaerica|type=transcript|length=5871bp|location=Sequence derived from alignment at sc0000070:322763..328633- (Clytia hemisphaerica)
TTTGCGCTCACGATTCAATTCAGACTGTAGTTGCTCATGTTTCCCTCTTA
ATGTTTCGATTAAATCTTTTGAACTGTTCTCCATGGTCACTGTACGAACA
CTGTTCTTGATATCTTGTGCTGTAGCAGTTTCCAACTTTTGTTCCTGTTC
TGGCTGCTTCTTCTTCTCTGGTTCTTTCCTTTTCTCACATTTCCTGAAAG
ACAAATTCATATCAACTGTTAAAATGTTAAAAATAAATACTTAAATAAAA
TTTAAGGATGTTAGATGAATTTATGCCCATTGGAAAAGAAAATGTTTAAT
TCTGCTCAGGGACATATGAAAAACAGTAGATGGAAATTCAATAAAAAATG
CTAATATCTTTATGATTATTGAGAACAAGAATAATTTTTGGAAAAATTCT
GTTAGTTTCAAGACCATTGAGTTAAATACAAAAGAGAGAGAGGAATGTTC
AACAAGTCCAAAGCAAAGAAAAATGAAACTTAGAGATTTATGCCATATTT
TGGGGTGATGCAATGGATTTTTCTCTCAATTCAGAGTTTGACCGAAAACC
ATGCGGGTCTAACATTTTCAATAAGAAATAAGTGACATCCTTTCACATCC
AAGATGGGCTTTGAACTCAATGCTCAAGACACATTGCAATGAATTGAATT
TAATTAACATATCTGTACCTCAATTTATCTTTGTGAACATCCTTCAATAA
AGAAAGCAATTGCTTTGACCAATGAAGTATGTTTGTTATGGTTGACAAAT
CATTTGTAGAATAGGGTTGAGCTGCTTGATTCAGCATGGATTTGAAATTT
ATATTGATTTGTATTAAGAAATTATTTTTAATTTCATCAGCTGATATAAA
CCCCATTAGTTTCTCCATTGCCTGTCTATATTCTTTTCCTTCTTCATAAA
CAAATGGGTCATCATTTCCTTTTCTCTCAATGGCATATTTTACATTATGC
ATATCAGCTGACCCAACTTCAAGTAGATAGAACAGATAAAGTGTCATTTC
CCCTATTTCAAAGCCTCTTGACTTATTGGAATTTCCAGTTGGAAAATGAA
TCACCCTCTTGGAATCAGCAGAATATCTGTAAAATAAAAAAAGCGTTAGA
AAACAGTTGTTATACTTGCAGAATAATGAGGGTAAGGATGAGGCCCTGAG
ATCAGATTGTGATTGTTTTCTACCCACCACACTAAAGCTCTATTTGACGA
ATACGCTATCTCAAAATCGTAAGAACCGCGCTCATCTAAAAGGACTGGAA
ATGACAACAAAGTTGCGTGATCGTGTTTAGGAATAGGGCATCGTATCAGG
AAATTTTAGTTTTTTACTTTCCGGCGCACAAAAAGATTCTTATTGTAGAA
TTTTCCACGAGAGGACTATTTTCCTCAGATGGCTAATTTTCAAGGGCCTT
CAGAGGTTTACCATGCCCGTAAGAAAATTATGACTAGCTGTTATCAGGCT
AGGGAGAAGGGGGGGGGGTGGAATGTTTCCCTCACAGAGGCAAAACACAA
CATTTATTTCATAATGCAATTTCTTGATATTTTCTAAACGCAGTTGAAAA
AAATTTCTTTACCTGTCAACTACTTTTTCAAACAATTGCAATGCCTCGTT
GCAAAACTTCAAATCTTTTTCAAACTCATGCTTTCTTTCAGCAGCAAAAA
GTATTTCGCCAACATAATATAGAACATCCTCGAAATAAGACACAATAATT
GAAAGTCCATCGATATCAAGTACTGTACGGAATTTATAGTTAAAAGTGCA
AACCAAACGATCCATTTTTCGAATGAATACATCAATGGATTTTAGTTGTC
CCGTAGATTTATTGTAGCGTTGTAAGTATGCAAGTAGATGTTCCAAGTGG
GCTTCCCCAAAACCCAAAAGAAGATTGACATATTTTTCAACATCAATGAA
ATTTGTAGAGTTGGTATATGAGTTTTGTTTGAGAATGGCTGCTTGGCTCA
TGATAACTCAATACTAAAAAATATTATATGCTCATAATGTTATATTGCAA
ATGTTTGAATATGTTTGAAACTTATCAAGCATTATAAATATTGCACCCCC
CTTTAAATTTAGCTTTCATGGAAGTATGGTAGAAAGTCACACGAAAAGTT
TTGTATTGAATCGACACTAAATTTTCTAATCATATTTTTAGGCATACAAG
GAAAAAACCTCGGAAAACAATGAGATAAACACTTACACTTTTTAACCCAA
TTTGAAGATTTGAAACCAAAATAAATCGTACTTTCAGCTTTTACAACTAG
AGGTTTTCATTTATAATTTTTAGTGTTTTTTCTATGTAAAAAGAGAAATT
AAACAAAAGGTTTAATGGATCAACATTTTGATACATTGAGTGAAAACATC
CTCAGTAGCTGCATGCAATAGGATAATGACTTCTTTCTAAGGCAAAAACT
GTGATTAGAGAGATTCCCAAAACTTAATGACAATATATGGCAACCGTGAC
GGGAATATCTTGGCTTCATAAATAATAGTAATAATAAATGAGTAAACAGC
GTTTATATCCCTACACTAGCGACCATAGTGTAGAGCATCCGGCTATGGTG
CGCAAGGTTGTTGGTTCAAACCCCAGTCGGGTCATATCAAAGATTTCCAA
AATGGTACTTGATGCCTCTCTGCTTGATGTTCAGCAATTAAGAGAATGAT
CAAGGGTAAGTGGAGTAATCCAGGAAGAAAGCGTGGCGCCCTCCCCTACC
TTCGGGTAGATAGCTATCGAATGAGGAGCCTTCGGGTCGCCTCCGATTGC
AGTCGCAGACTTACTTACTTACTTAAAAATAAATAGAAATAATAACAAAA
CGAATAATAATAAATAAAACTAGTGAAAAAATAGTATTTTAATTTATTGA
TGTGTGTGAACGTGTCCTGTACAAATTACATAAAAATATGGTATTTTTAC
AAATCATATAAAATAACTAAAAAAGCGATACATTACATATTAGGAGTCTT
CTCGTTAGAAGATTAGAACCGTCTTACGCTTTAGTGTTACTGCCTGCCAG
CTTACCAGACATTGACACACAGTTTTTGAATTAAGTGCGTTAATCCAGTG
TGAACCACTAGAGAAAAAGGCCATGGCGTATTATGGAATCAATACCTAGC
CCAGTAATAAACAGGCTTATTGAGTTTCTGTCTACCCTATTCCCCTTCAC
ATTCACTTGCCAAGTGAATAATAGCATCCAGTGGGAATCGAACCCTGACC
TCCCTGACGGCAGTCAAGATTGATAAACAGTATAAGGCACTATAGGGTTT
TACATTCAGACATTTCATTGTCCACCATCACTCTTTTCTTCGCTTTCTTC
TTCAGTTGTTTGAGATTCTAACAAAGGGCCAAAACTTTTGAGAACCATCT
GTTGGTAATTGCTGATCCTAAAATACAGGAAATCTCAAGGTAGAAAAGTT
TTCATTAGGCTGGACTTAAAAATGTTGGTTTGCCATCAGCCGACCCTCGA
TGTTAGAGGCCAGTCGGAAAATATTTCATTTTGACGACTTGTGAAAGTTC
TCTTTACATAATTTTGAAATAAAAACAGAAGAGCTAGAGGGAAATTCACG
ATTCTTAAGCTTAAGACTCGGGGTACCTAAGGCACTCCCCATATCGGCCG
CACAAGGTTCCACCCCTTAACGTAAATGTGCATAGGACGATGCCAAGGTG
TGTGAGCTCGTGGGTTGCTTTATGCTTTCGATTATTCTAAACATCGTCAT
ACAATGTAACATGACGGCAGTGAATTACTACCTTGATGTAACGTTTTACT
ATAACAAATAGTACATATCGACCACAAGCCAAATAACGTCAAACCACCCT
CCCAACATCATCAAGCAGATTCCACTTTCAATTCAAAAACACTTATCCAA
TCTCATAGAGTGAAGAGATATTCCACCAAGCAACACCGCATTACCAAGAA
GCACTACAAAGGTCGGGTTATAACCATACTTTTGAATATAAACCAACACG
TAACATCAACAACAGAACAAAAAAAATCGGAAGAGAAAGATAATTTGGTT
CAATCCACCGTATATATAATGCAAACTTGTCAACAAATATCGGGAAGTTT
TTCTTAAACTTAATCCAGAAGCACTTTCTGCGTGGGCATAAATACTACAA
GATCCTCAACATTGAAAGTGAGTTCTGTATGCCCAAAGTGAAGTCGGTTC
TCAATAAGCACAACAAGAAAATCACAAACCCAAAGCCGCTTGACCAGAAC
TGCAAAGCAAGAAGAACAACACCGAAAAGAAATATATCGGATTGTACGGT
TATACTTTTTTAAAAAAACATTTCTGTACACACAAGCTAACCCCGGACTA
ACAAGAACTTCAATAACACCCTTTCAACAGACTTCTGGAACATGAAAGAA
AATGGAAACCTGACATTTAGCTGAAAAATAGTGTGCCACAAAAGAGCTTA
TACCCCAGAAACAAACAACTGTTTATTATGCTTACAGGAGAAATTGCAGG
AGATTGCCCCCTTTCCGGGTCAGAACTTGTGAATTAAGCAAACTGGAATC
ATCGCCAAATGCCGTCGCAGACGGAAATTATTTCTCCTCGAGACTTTCAA
ATAATTTTGAATTTTGAATTGACGTCAGAAAATTTCTTGAAGACATCAAA
TTATTGATTTTTATAGAACATTTATTTCACTGAGGATTGCCATCCTGGGT
GGCATGAAACTTTGAGTATGAAATTAACTTAGTTCGTTTTGTTTACTCAA
ACTAGTTAATGTTTTTCAAGTTTTTTCGAAGCGTTTCGATATAGAAAATG
AGATGGAGCACGGTCAGACTGTCCAACTTGCTGCGAAATCGAAAAATCGA
AAAGTTTTTTCCTTCTTCAAGTTATTCAAGATTTCCTTTATAATAGTAAG
ACGTCATCAAAATGGGAAAAATTGAGGTTTTTGTCAAAAAATTTTCAATT
AAAGAGCAAGTGGGACCATCTGACCATGTTCCATCTCTTTTTCTATATCG
AAACACTTTGAAAAACCTAAAAAGACTTTTTCGTTAAGGGGTGGGACCTT
GTGCGGCCATTGGAGAGTGCCTTGGGTACCCCGATAACAGGCCAAGACAG
ACACGATAGAGATCATCAATAAGAAAATTAACAAAAGTGGAATTGGAAAT
AAATGAAATTTATACCAACCTATTGCGAAAATCTCTATTTTCTTTACTAA
GTCTATCAATTTTGTTTTTTTGTTCTTCAATCAACATTTGGGCTTCTGTA
TTTCTGAAAAATCACACCGTGAAACAGATCTTTATTAGAATCTTTTACTG
GTATTTGCTTTAAAAATGTTGATATTGTTATTTTTGAGGACTCTGATAAT
AGTTTCACACAAAATTGTTATGTACATGAAATTTCAAATAAAAGGTAATC
AATATAGTGGAAACTTACGAAATATCAACTTTGTCTGAAAATTTAATGAG
TTTAAAGAAAAGTATATAATCTGTTTTCTAGCATAAGTACTGTAAAGAAA
AGCATACACAAGCAGAACAAAGAGTGAGTTTTTAATTGAAAATTATAATT
TTGAAGTGAAAAGACAAACTTCTTGCGCTCAAGGTTTAATTCAGACTGTA
GTTGCTCATGTTTCCCTCTTAATGTATCAATTAAATCTTTTGAACTGCTC
TCAATGGTCACTGTACGAACACTGTTCTTGATATCTTGTGCTGTAGCAGT
TTCCAACTTTTTTTCCTGCTGTTCTGGTTGATTACATTCTCTGAAGATTT
AAAAACAATGAAGACAAAATTCATATTCTGTTAGTCTAGTTCTTATGAAC
CAATCTTACAAAAATTATAGCTATCGAAAACTACCAAAAAAAAAGACAAT
CTTACCTCAATTTGTCTTTGTGAACATCCTTCAATAAAGAAAGCAATTGT
TTTGACCAATGAAGTATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003792XLOC_003792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006784-exon-sc0000070-1575043694:328441..328633TCONS_00006784-exon-sc0000070-1575043694:328441..328633Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1575043694:327946..327965TCONS_00006784-exon-sc0000070-1575043694:327946..327965Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1575043694:322763..322808TCONS_00006784-exon-sc0000070-1575043694:322763..322808Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1510915933:328441..328633TCONS_00006784-exon-sc0000070-1510915933:328441..328633Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1510915933:327946..327965TCONS_00006784-exon-sc0000070-1510915933:327946..327965Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1510915933:322763..322808TCONS_00006784-exon-sc0000070-1510915933:322763..322808Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1491911889:328441..328633TCONS_00006784-exon-sc0000070-1491911889:328441..328633Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1491911889:327946..327965TCONS_00006784-exon-sc0000070-1491911889:327946..327965Clytia hemisphaericaexon
TCONS_00006784-exon-sc0000070-1491911889:322763..322808TCONS_00006784-exon-sc0000070-1491911889:322763..322808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:322763..328633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2177	7.22106	4.04115	2.34705	11.8435	1.88287	9.38731	15.0274	6.40104	12.895	7.59134	5.75312	12.8992	13.3093	25.0364	22.6694	22.8145	25.8681	16.8298	18.1274	4.33078	14.9686	7.6932	7.97282	29.1787	39.6351	11.2457	7.3515	8.55965	7.31332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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