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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006762 ID=TCONS_00006762|Name=TCONS_00006762|organism=Clytia hemisphaerica|type=transcript|length=3515bpRun BLAST on NCBI protein sequence of TCONS_00006762-protein >TCONS_00006762-protein ID=TCONS_00006762-protein|Name=TCONS_00006762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=711bp MHHFIATITLALVFFFSGCYGDKIKPQDPVCNQPLGLEDGSIKNSQLTTPRun BLAST on NCBI transcript from alignment at sc0000070:427106..439111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006762 ID=TCONS_00006762|Name=TCONS_00006762|organism=Clytia hemisphaerica|type=transcript|length=12006bp|location=Sequence derived from alignment at sc0000070:427106..439111+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:427106..439111+ >TCONS_00006762 ID=TCONS_00006762|Name=TCONS_00006762|organism=Clytia hemisphaerica|type=CDS|length=23496bp|location=Sequence derived from alignment at sc0000070:427106..439111+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006762 vs. Swiss-Prot (Human)
Match: DDR2 (Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 5.052e-28 Identity = 68/166 (40.96%), Postives = 98/166 (59.04%), Query Frame = 3
Query: 2634 SLRSFPREQLAFREKIGVGQFGEVHIAEATGLDDIYGTIGHYNSWGLPDTAN----VAVKVLKSD-DAMIEEEFLKEVTVMAELKHENVVRLLGVC-EDKPMIMVCEYMENGDLNQYLRQKRPIDEHNIRASMLPDDALSVDTLIHMAQQIAAGMKYLHAEGFIHR 3113
++ FPR+ L F+EK+G GQFGEVH+ E G++ + L +AN VAVK+L++D + +FLKE+ +M+ LK N++ LL VC D P+ M+ EYMENGDLNQ+L + P + + +S L MA QIA+GMKYL + F+HR
Sbjct: 554 AVEEFPRKLLTFKEKLGEGQFGEVHLCEVEGMEKFKD-----KDFALDVSANQPVLVAVKMLRADANKNARNDFLKEIKIMSRLKDPNIIHLLAVCITDDPLCMITEYMENGDLNQFLSRHEPPNSSSSDVR-----TVSYTNLKFMATQIASGMKYLSSLNFVHR 709 The following BLAST results are available for this feature:
BLAST of TCONS_00006762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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