TCONS_00006760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006760
Unique NameTCONS_00006760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006760 ID=TCONS_00006760|Name=TCONS_00006760|organism=Clytia hemisphaerica|type=transcript|length=796bp
ttccaaaagaaaaacgaaaaagaagaagacttgaaccaacaaacaacaac
aacatgaaATCGACCATCGTTTACGCTATTCTCTTCTGCTTGGTAGCAAG
TACACTTGCCATGAAAAATCGCAATAAGAAAAACAAGAAGATCAACAAAA
ATCAACAAGAAGACGATGACAAAGAATTCGAAGATGTTCTTGGTCTCCAA
GATCCTGGATTCCATTGCCCAGATTCTCTTTGCAATGGACGTGCTGATGG
AAACTATGAATATGCTGGCAATTCTTCTTACTTTGTTCAATGTACTGGTG
GACAAGCCGATTGCCAAGCATGTTGGCCATTGAATTTGGTTTTTAAAGAA
GAATGTAACCAATGCTTGTACAGCAAAATTGATGAATGTCTCACAACACA
AGAATGGGAACCAGCTCGACAATTTGATTGTCCAGATATGTGTGGAAAAA
TGGGACCAAGTTTCGATGGCAATATGGCGGATCCAGTTCAGCAACGCCAT
TATGTTGCTTGTTGGCATGGTGTTACTGTTGGGTGTATCATGTGTCCAAG
TGATTTGATTTACAACGAAGAACACAATGCTTGTCTTTATGAAGGAAAAT
ATTTCACCCAACCAGATCCAAACAGTTCTTAaaccgaaaaattgaaaaac
atgtAATCCTcataaaatttggattttggttaAAACGATAATTTAATTTA
TAAGTGATATATGACATTTATGTAATTTCAAAGTTAATTGTAGTTGATTT
TTTGCTGTCTAGTTCTTTTGATGTTATATTTGTAATTCGTGATTTC
Run BLAST on NCBI

protein sequence of TCONS_00006760-protein

>TCONS_00006760-protein ID=TCONS_00006760-protein|Name=TCONS_00006760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
PKEKRKRRRLEPTNNNNMKSTIVYAILFCLVASTLAMKNRNKKNKKINKN
QQEDDDKEFEDVLGLQDPGFHCPDSLCNGRADGNYEYAGNSSYFVQCTGG
QADCQACWPLNLVFKEECNQCLYSKIDECLTTQEWEPARQFDCPDMCGKM
GPSFDGNMADPVQQRHYVACWHGVTVGCIMCPSDLIYNEEHNACLYEGKY
FTQPDPNSS
Run BLAST on NCBI

transcript from alignment at sc0000070:374366..375619+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006760 ID=TCONS_00006760|Name=TCONS_00006760|organism=Clytia hemisphaerica|type=transcript|length=1254bp|location=Sequence derived from alignment at sc0000070:374366..375619+ (Clytia hemisphaerica)
ttccaaaagaaaaacgaaaaagaagaagacttgaaccaacaaacaacaac
aacatgaaATCGACCATCGTTTACGCTATTCTCTTCTGCTTGGTAGCAAG
TATGTCACCATTTATTTCTTATACATATTTCTTTCTTTATCTCAAGTGAA
GTtgtgttttgaaatttgtattCTAATATTCTAAGAATATTTGCTTTAAA
GAAAGACTTTTATCGAGAATGTTCTAAGTTAAACTGAGGGTGATATACCC
AGTAAGAGCTATTGTCTATGTTTCTTACGTTTGGCTTGGGCCCTAAGTAG
AAATTATTCTCTAATTGATAAGCATCAACCATTTCAGGTACACTTGCCAT
GAAAAATCGCAATAAGAAAAACAAGAAGATCAACAAAAATCAACAAGAAG
ACGATGACAAAGAATTCGAAGATGTTCTTGGTCTCCAAGATCCTGGATTC
CATTGCCCAGATTCTCTTTGCAATGGACGTGCTGATGGAAACTATGAATA
TGCTGGCAATTCTTCTTACTTTGTTCAATGTACTGGTGGACAAGCCGATT
GCCAAGCATGTTGGCCATTGAATTTGGTTTTTAAAGAAGAATGTAACCAA
TGCTTGTACAGCAAAATTGGTAAGTGTGCAGTTATGAGATAGGCCTTAGG
ATTCATATCCCAAAGTCATAGACCCGATTCTTCAATGTATTTTTCACATT
AATTTGCCCCTACTTGCTATAAATTCTGACAGTGCCATCACTGGATTCGG
GCTACCTTCCAAACTTCAATTCAATACCTAAGCTAGGACGTTGGAGCTGA
AACAGCAGTAATCAATAGgaaaatttcttgatattttagATGAATGTCTC
ACAACACAAGAATGGGAACCAGCTCGACAATTTGATTGTCCAGATATGTG
TGGAAAAATGGGACCAAGTTTCGATGGCAATATGGCGGATCCAGTTCAGC
AACGCCATTATGTTGCTTGTTGGCATGGTGTTACTGTTGGGTGTATCATG
TGTCCAAGTGATTTGATTTACAACGAAGAACACAATGCTTGTCTTTATGA
AGGAAAATATTTCACCCAACCAGATCCAAACAGTTCTTAaaccgaaaaat
tgaaaaacatgtAATCCTcataaaatttggattttggttaAAACGATAAT
TTAATTTATAAGTGATATATGACATTTATGTAATTTCAAAGTTAATTGTA
GTTGATTTTTTGCTGTCTAGTTCTTTTGATGTTATATTTGTAATTCGTGA
TTTC

Coding sequence (CDS) from alignment at sc0000070:374366..375619+

>TCONS_00006760 ID=TCONS_00006760|Name=TCONS_00006760|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0000070:374366..375619+ (Clytia hemisphaerica)
ccaaaagaaaaacgaaaaagaagaagacttgaaccaacaaacaacaacaa
catgaaATCGACCATCGTTTACGCTATTCTCTTCTGCTTGGTAGCAAGTA
CACTTGCCATGAAAAATCGCAATAAGAAAAACAAGAAGATCAACAAAAAT
CAACAAGAAGACGATGACAAAGAATTCGAAGATGTTCTTGGTCTCCAAGA
TCCTGGATTCCATTGCCCAGATTCTCTTTGCAATGGACGTGCTGATGGAA
ACTATGAATATGCTGGCAATTCTTCTTACTTTGTTCAATGTACTGGTGGA
CAAGCCGATTGCCAAGCATGTTGGCCATTGAATTTGGTTTTTAAAGAAGA
ATGTAACCAATGCTTGTACAGCAAAATTGATGAATGTCTCACAACACAAG
AATGGGAACCAGCTCGACAATTTGATTGTCCAGATATGTGTGGAAAAATG
GGACCAAGTTTCGATGGCAATATGGCGGATCCAGTTCAGCAACGCCATTA
TGTTGCTTGTTGGCATGGTGTTACTGTTGGGTGTATCATGTGTCCAAGTG
ATTTGATTTACAACGAAGAACACAATGCTTGTCTTTATGAAGGAAAATAT
TTCACCCAACCAGATCCAAACAGTTCTTAaccaaaagaaaaacgaaaaag
aagaagacttgaaccaacaaacaacaacaacatgaaATCGACCATCGTTT
ACGCTATTCTCTTCTGCTTGGTAGCAAGTACACTTGCCATGAAAAATCGC
AATAAGAAAAACAAGAAGATCAACAAAAATCAACAAGAAGACGATGACAA
AGAATTCGAAGATGTTCTTGGTCTCCAAGATCCTGGATTCCATTGCCCAG
ATTCTCTTTGCAATGGACGTGCTGATGGAAACTATGAATATGCTGGCAAT
TCTTCTTACTTTGTTCAATGTACTGGTGGACAAGCCGATTGCCAAGCATG
TTGGCCATTGAATTTGGTTTTTAAAGAAGAATGTAACCAATGCTTGTACA
GCAAAATTGATGAATGTCTCACAACACAAGAATGGGAACCAGCTCGACAA
TTTGATTGTCCAGATATGTGTGGAAAAATGGGACCAAGTTTCGATGGCAA
TATGGCGGATCCAGTTCAGCAACGCCATTATGTTGCTTGTTGGCATGGTG
TTACTGTTGGGTGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGAA
CACAATGCTTGTCTTTATGAAGGAAAATATTTCACCCAACCAGATCCAAA
CAGTTCTTAaccaaaagaaaaacgaaaaagaagaagacttgaaccaacaa
acaacaacaacatgaaATCGACCATCGTTTACGCTATTCTCTTCTGCTTG
GTAGCAAGTACACTTGCCATGAAAAATCGCAATAAGAAAAACAAGAAGAT
CAACAAAAATCAACAAGAAGACGATGACAAAGAATTCGAAGATGTTCTTG
GTCTCCAAGATCCTGGATTCCATTGCCCAGATTCTCTTTGCAATGGACGT
GCTGATGGAAACTATGAATATGCTGGCAATTCTTCTTACTTTGTTCAATG
TACTGGTGGACAAGCCGATTGCCAAGCATGTTGGCCATTGAATTTGGTTT
TTAAAGAAGAATGTAACCAATGCTTGTACAGCAAAATTGATGAATGTCTC
ACAACACAAGAATGGGAACCAGCTCGACAATTTGATTGTCCAGATATGTG
TGGAAAAATGGGACCAAGTTTCGATGGCAATATGGCGGATCCAGTTCAGC
AACGCCATTATGTTGCTTGTTGGCATGGTGTTACTGTTGGGTGTATCATG
TGTCCAAGTGATTTGATTTACAACGAAGAACACAATGCTTGTCTTTATGA
AGGAAAATATTTCACCCAACCAGATCCAAACAGTTCTTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003780XLOC_003780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006760-proteinTCONS_00006760-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006760-exon-sc0000070-1491911889:374366..374464TCONS_00006760-exon-sc0000070-1491911889:374366..374464Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1510915933:374366..374464TCONS_00006760-exon-sc0000070-1510915933:374366..374464Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1575043694:374366..374464TCONS_00006760-exon-sc0000070-1575043694:374366..374464Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1491911889:374703..374984TCONS_00006760-exon-sc0000070-1491911889:374703..374984Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1510915933:374703..374984TCONS_00006760-exon-sc0000070-1510915933:374703..374984Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1575043694:374703..374984TCONS_00006760-exon-sc0000070-1575043694:374703..374984Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1491911889:375205..375619TCONS_00006760-exon-sc0000070-1491911889:375205..375619Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1510915933:375205..375619TCONS_00006760-exon-sc0000070-1510915933:375205..375619Clytia hemisphaericaexon
TCONS_00006760-exon-sc0000070-1575043694:375205..375619TCONS_00006760-exon-sc0000070-1575043694:375205..375619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:374366..375619 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0604391	0.0589376	0	0	0.276154	0.17506	0	0.473866	0.459606	0.614087	0	0.322353	0.855664	19.5803	0	0.0368299	0.42535	0.0681183	0.0381434	0	0.972045	0.486122	0	0	0.693395	0.629309	1.06904	1.09406	0	0.0683466
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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