TCONS_00006755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006755
Unique NameTCONS_00006755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006755 ID=TCONS_00006755|Name=TCONS_00006755|organism=Clytia hemisphaerica|type=transcript|length=1670bp
gccaattttttttttatcaaaaagtctgTCActctttcttattttttgtt
ttagtttaaaatcaacaaaagaaaacagTAAAATGTATCAACTCAAATAA
TGCTGAGTTATCCCTTATTGAAAACTAGAATGATAATATCAAATAACAAG
GTTGGATCCAAACATGGCTCAAGCTACCACAAAACCAGTTGTTTCTGAGG
AGTATGTTTCATTGCTTTTAAAATTGGGAATGACTGACTTAGAATCCACG
TtgttatttttggaaaatgcgAAAACTAAAACCCCTGCTGTTAAAACTTT
TATCAGGAGATAAGAGCGATTGTTATTTGATTATAACTACCATACTCGGA
TAGAGGTTGATAAAGAACCGTTAGTGGTAATAACAAACTATCTTCAAGCT
GCTTTAGATCATATTGTACGATGTCTTCCAAATGAAAGTGGAAGAGATGa
tgatttcaatcaaaaaaccAACAACTGTCAAGAGTatcttaaaaagttaa
aaattcagCAAAAGAGTAAGAAatttgTTACTGGAAGTAATATGATTGCA
TTTCCAATTAAAGACTCAAATGGAACAAGATCTTATGAAGTTGATTCACT
AGCacattatttctttttcttgctGTTTCTTGTTCGATTTATTTGCATCT
GGGTTATTACCAGATGTTAAAAAAGCTGTCGAAAATACATCAAAAGGAGA
AAAGTACAGTGAAAGAATTGTACCATTCAAGAACACATTAGAAAAGTTGT
ATTCTTTCGTGTTAAATAACACCCAAAAAGAGATCTCCTTGGTGAAAATT
AACGATTTATTAAAATGTATTTTGCACGGAAATGCACAAACGATTCGTCC
CAAACAATACATTGAGAACATATTCGCACTTTTGGAACATTTTGAAAGGT
TATTGATTTCACTAGCCACTACATATAAAGTTAATCTTGGaaatttggaG
AAAAGCAATGATGGGTTGTGCGAAAATGGTGTTGAAGTGCACTTCAAAGT
TGCCAGCCCGACCAAAGTAAAGAATGCGATTAAATATGAACAGTTGAAGG
AAGAATTAAAAATTGAACGCCGAAAAAATTTAGAGTTGAAAAGAGTGATT
GAAGAACAAAAATAATATAACTGACCTGAAGAAGAACAACAAAGATTTCC
AGGATAGTATTACCAAGATGTACCAGGATATGGTTATCAGAGATTTCGGT
ACTAAACTACCTGTACCATCAGGAAATTCCAAAAGTGAGGAAATAAGTGA
CATTGGCGTACAGGAACAAGAAGATTAAATCTTGAAAcattaaaatataa
tatatCAGTGTAATCAAGGCGTCTATAGGAACTTTGGAAACCttgaaata
ttatttgaaaCAGTCAAATAATGACATGAAAACCCTAAAAGGTTAAAAAC
ACGATCTTTATTATGGCATTATGTTTGTTTTGTTATAAAACGGTTTATTA
TAGCATATTTGGCTACACTGATGGATTTGAATACATGAtccaaaagattt
gaaaaaattcgaagGCATCCTGCTCTGGTAGTGTAGATAATGCGAAATTT
GTGAAaggattttttgaatattttttacgaACTATATTTTATTAGTCTGC
CAGAAAATAGCATGGGGTACTAGTGTTacgagctgacgggtatgtgcgac
TTACAGGTTCAAAAGAGGCA
Run BLAST on NCBI

transcript from alignment at sc0000070:343953..346798+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006755 ID=TCONS_00006755|Name=TCONS_00006755|organism=Clytia hemisphaerica|type=transcript|length=2846bp|location=Sequence derived from alignment at sc0000070:343953..346798+ (Clytia hemisphaerica)
gccaattttttttttatcaaaaagtctgTCActctttcttattttttgtt
ttagtttaaaatcaacaaaagaaaacagTAAAATGTATCAACTCAAATAA
TGCTGAGTTATCCCTTATTGAAAACTAGAATGATAATATCAAATAACAAG
GTTGGATCCAAACATGGCTCAAGCTACCACAAAACCAGTTGTTTCTGAGG
AGTATGTTTCATTGCTTTTAAAATTGGGAATGACTGACTTAGAATCCACG
TtgttatttttggaaaatgcgAAAACTAAAACCCCTGCTGTTAAAACTTT
TATCAGGAGATAAGAGCGATTGTTATTTGATTATAACTACCATACTCGGA
TAGAGGTTGATAAAGAACCGTTAGTGGTAATAACAAACTATCTTCAAGCT
GCTTTAGATCATATTGTACGATGTCTTCCAAATGAAAGTGGAAGAGATGa
tgatttcaatcaaaaaaccAACAACTGTCAAGAGTatcttaaaaagttaa
aaattcagCAAAAGAGTAAGAAGTAAGTAATTGTGTTTTACCATTTTGGT
TAACCACATATGTTTTTCTTGAagatcagtttacttgaaaagaaAGACTC
GAGGTTGGCTTGTTCTTGATGTACAGGAGTAATTCTGTACGAGTCTCGTT
GTCTCCATAAGAAAATTTGTTGACCTGATAGCTGATGATAAcatttctat
ttttagatttgTTACTGGAAGTAATATGATTGCATTTCCAATTAAAGACT
CAAATGGAACAAGATCTTATGAAGTTGATTCACTAGCacattatttcttt
ttcttgctGTTTCTTGTTCGATTTATTTGCATCTGGGTTATTACCAGATG
TTAAAAAAGCTGTCGAAAATACATCAAAAGGAGAAAAGTACAGTGAAAGA
ATTGTACCATTCAAGAACACATTAGAAAAGTTGTATTCTTTCGTGTTAAA
TAACACCCAAAAAGAGATCTCCTTGGTGAAAATTAACGATTTATTAAAAT
GTATTTTGCACGGAAATGCACAAACGATTCGTCCCAAACAATACATTGAG
AACATATTCGCACTTTTGGAACATTTTGAAAGGTTATTGATTTCACTAGC
CACTACATATAAAGTTAATCTTGGgtaagaatgtttttttcattcttttt
tcattttgtgtTGATTGACTTGAGTATTTTTAGTTGGCATTTCTGATAGA
ATGACTTTCAGGAAATTTATTAGTACGTCTattgattttttcagaaattt
ggaGAAAAGCAATGATGGGTTGTGCGAAAATGGTGTTGAAGTGCACTTCA
AAGTTGCCAGCCCGACCAAAGTAAAGAATGCGATTAAATATGAACAGTTG
AAGGAAGAATTAAAAATTGAACGCCGAAAGTAAGTCcatgtttgtttgaa
aaatacacAGCCAATAAGATACACAAATCGAAGTGAACCTAGTGGTTcat
agaattttgcaattttaatcCACAGAAAATCATTTAGTGattccaaaaaa
gaaaagtaagtAAATAATCTTTTTTAATCGTCAAAATGCATTTCGCCTTC
AAGTATTGTCTCGAACCTGCGAAAAAGAAGgaaacaaaatcttaaaaatt
cttCAAACTTTCCAGATTTGAGGGTTGTGATTCTTATACAAAAAGAATTC
TTGGAAATGATTGAGATTCGTTGAAATAAGCTTGGAAATTCTTGGTGCGC
TATTTTTACCAAAGCTGGACATTAAATCAAATCAAGTTTATAAAAAactg
atttgaagttttaccactggcaTCGGGGAAGGTGCCCAAAAAACTATCCA
ATGAGCTTCTAATTCTTTTCAGATCCTAAGTTTGACGGTTCAAAGTTTGA
ACTAGTCAACTTAATAACAAAATAGTactggcacttaaagggttgtTGCT
TTTTCTACAGAAATTTAGAGTTGAAAAGAGTGATTGAAGAACAAAAATAA
TATAACTGACCTGAAGAAGAACAACAAAGATTTCCAGGATAGGTGAGTAC
TCTATTGCCTACTTGTGTGAATACTTATGGAGtgattttacttaaaaaag
aggaagaaatttttttttccacaAAATCGAACACAGCAAAACATCAGGAA
GTAGTATCTGACCTGGTATgagatatgtgtctgatatgaaacgggattaa
taaaacttaaaaaataattaGATGGGATGAGATGTTTTCGAATTAAATCT
TCTCGTGATTTTAccaggaaaaaaatcaaacaaatgtaacgaaaataaaa
acatatgtTAAACGaaattttaggttttgataGTATCAGTTGCCGTATGT
TATACTCTTTTCTGattattgtttcttttttagTATTACCAAGATGTACC
AGGATATGGTTATCAGAGATTTCGGTACTAAACTACCTGTACCATCAGGA
AATTCCAAAAGTGAGGAAATAAGTGACATTGGCGTACAGGAACAAGAAGA
TTAAATCTTGAAAcattaaaatataatatatCAGTGTAATCAAGGCGTCT
ATAGGAACTTTGGAAACCttgaaatattatttgaaaCAGTCAAATAATGA
CATGAAAACCCTAAAAGGTTAAAAACACGATCTTTATTATGGCATTATGT
TTGTTTTGTTATAAAACGGTTTATTATAGCATATTTGGCTACACTGATGG
ATTTGAATACATGAtccaaaagatttgaaaaaattcgaagGCATCCTGCT
CTGGTAGTGTAGATAATGCGAAATTTGTGAAaggattttttgaatatttt
ttacgaACTATATTTTATTAGTCTGCCAGAAAATAGCATGGGGTACTAGT
GTTacgagctgacgggtatgtgcgacTTACAGGTTCAAAAGAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003778XLOC_003778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006755-exon-sc0000070-1491911889:343953..344474TCONS_00006755-exon-sc0000070-1491911889:343953..344474Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1510915933:343953..344474TCONS_00006755-exon-sc0000070-1510915933:343953..344474Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1575043694:343953..344474TCONS_00006755-exon-sc0000070-1575043694:343953..344474Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1491911889:344659..345076TCONS_00006755-exon-sc0000070-1491911889:344659..345076Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1510915933:344659..345076TCONS_00006755-exon-sc0000070-1510915933:344659..345076Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1575043694:344659..345076TCONS_00006755-exon-sc0000070-1575043694:344659..345076Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1491911889:345197..345331TCONS_00006755-exon-sc0000070-1491911889:345197..345331Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1510915933:345197..345331TCONS_00006755-exon-sc0000070-1510915933:345197..345331Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1575043694:345197..345331TCONS_00006755-exon-sc0000070-1575043694:345197..345331Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1491911889:345863..345944TCONS_00006755-exon-sc0000070-1491911889:345863..345944Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1510915933:345863..345944TCONS_00006755-exon-sc0000070-1510915933:345863..345944Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1575043694:345863..345944TCONS_00006755-exon-sc0000070-1575043694:345863..345944Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1491911889:346286..346798TCONS_00006755-exon-sc0000070-1491911889:346286..346798Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1510915933:346286..346798TCONS_00006755-exon-sc0000070-1510915933:346286..346798Clytia hemisphaericaexon
TCONS_00006755-exon-sc0000070-1575043694:346286..346798TCONS_00006755-exon-sc0000070-1575043694:346286..346798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:343953..346798 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0886	13.687	4.1242	2.60923	1.86659	1.1386	4.93274	4.55952	7.38714	4.94261	5.14184	5.49864	5.76555	4.61228	11.624	11.986	7.9662	10.3325	7.97639	5.8346	10.0487	9.7914	13.7821	14.96	4.82328	6.934	8.45746	7.35586	6.19906	7.16713
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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