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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006736 ID=TCONS_00006736|Name=TCONS_00006736|organism=Clytia hemisphaerica|type=transcript|length=493bp
AGCTACACCTCCAGCAGTCCAGCAGTCCAGTCCAGCTCAATTTAGTCAAT
CTTCTCTTGCTCAATCAGCTAGCATCAATCTTCGATTCTTATTATACCAT
CCAGCCATCGACAGATCATCAACTAAACCTGAACCATACTCTAATCAACG
ACTGTCAGTATATGTAATtaTTTGGTTATGATGCACCAAGCAGCTGCCTT
TCTCAAATCAAACTTATATACCAACCCTACAAATTTAATTGATGTCGAAA
AATATGTCAGTCTTCTTTTGAGTTTTGGGGAAACCCACTTGGAACATCTA
CTTGCATACTTACAACGCTACAATAAATCTATGGGACAACTAAAAACCAT
TGATGTATTCATTCGAAAATTGGATCGTTTGGTTTGCACATTTAACTATA
AATTCCGTACAGTATTTGATATCAATGAACTTTCAATTATTGTGTCTTAT
TTCGAGGATGTTCTATATTATGTTGGCGAAATACTTGTTGCTG Run BLAST on NCBI protein sequence of TCONS_00006736-protein >TCONS_00006736-protein ID=TCONS_00006736-protein|Name=TCONS_00006736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MMHQAAAFLKSNLYTNPTNLIDVEKYVSLLLSFGETHLEHLLAYLQRYNK
SMGQLKTIDVFIRKLDRLVCTFNYKFRTVFDINELSIIVSYFEDVLYYVG
EILVA Run BLAST on NCBI transcript from alignment at sc0000070:317964..321830+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006736 ID=TCONS_00006736|Name=TCONS_00006736|organism=Clytia hemisphaerica|type=transcript|length=3867bp|location=Sequence derived from alignment at sc0000070:317964..321830+ (Clytia hemisphaerica)
AGCTACACCTCCAGCAGTCCAGCAGTCCAGTCCAGCTCAATTTAGTCAAT
CTTCTCTTGCTCAATCAGCTAGCATCAATCTTCGATTCTTATTATACCAT
CCAGCCATCGACAGATCATCAACTAAACCTGAACCATACTCTAATCAACG
ACTGTCAGTATATGTAATGTAGGTTTCCATTTGTAACTTTTGTTTGTTTG
CATTTTCTCATTCAAACCATTCAAACTGAACCGAACCTGAAACATTCAAA
TTGTGGCAGGATTGATCCAATCCATCACAGTGTGGAATTCAAACTTGGAA
CTCCCACAAGGACAGGGGAGACAAGTTTGTCTACTCCGACTGTCTTTTTA
TCCAAAAACAGTTGCAGGATCTTTGATGAGTCATATTTTGTCTGACGGCC
AACCCCACACTAAGGTATCTAAGAAATCAACAATCCTCCAGTTTTTTTAA
CAATCACCTAAAATTTTACCAATTGTTGAACCCGTGCCGgtgccgtggta
tagtggtaTTCGACCTTAgcttctgtgcaggaggccagggttcgattcag
TCTCacagcagttcacttggcaagtcaagtgaacgttccttcgcccgggt
caacccatgcctttgaggggaattgggtagtcagttcaaggtgctgacgg
gacgctcattagtaagcgtctatagttgcgagaataccgtaggatcgtct
aatatcgacataacgtcttctaatctcgacatagctgtagcaggctggtc
ttcgaaataaaaaatcaaacataaacaaatacataccaaaaaataattaa
aagaacccggtttccttatgaatttgaaagggggccgggtgtgctaggtg
cggcACCTAGAAGTTTAACGCTGTGCTAGGTGCGGCAcctagaagtttaa
cgcggcttcctagcgcctagagcgtgtgcttgcaataaataataaggaaa
tggaaaccaggtcaactaagcgcgcaaattatttttatcatatgACTTGA
AGCGTACCGtgagaaagggtaacttgcatcagtggaggctaacatgcata
gccctcaaatgaatgacctggctggtcattaaaatacacataCGCAGCTC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACac
atacgcagctccgctcgcagctctactctaccatttttgtttcgatttat
tttcgtattttaatgaccagccgggcctttcatttgagggctattcATGT
TAGCCTCctctgatgcaagttaccctttttcacggtaataaagttgtaaa
attttaatgatggacacgagaaagttacggggaagtttgcatgcgtttcg
tgtgttgtgtaaaactgcttataatttggctgtttttttaattgaaagga
ttgcaatgtttactgaaattctagtttgatggatgaacttgttcgataag
aatgataccaagaatttcattcaaggtttgttttgattattttacagatc
cggtgtcgagattttaaattttaaatttcccagttacataactcggtttt
ttatggtgcatcttaaattttcaagtttcataacataaataaaatgtccg
agttaaattttcacacaaccaagttggtcaatcatactgtaattttgatg
tttgaatgTCTAACGTAACAATAGACAGGGGTATCTGTTGAAAATGCATC
AAAAAAGCTACGAGGAAtgcttttcatgtttttgtaatAATGTGTCATGT
CTATCGTAATATATTGGTACTAGCCGGTACCcagcgtcgcacgccggttt
agctgtttgctgaacgcatttaaagtcctttggatgttgggaaggtggct
taaacacgatgaaatcaaaattaaagagaagaattctcttcaaaattTGA
CTCTATctctcccgggtgacgtatcttttaaccatatttcgaaaaagatt
tttgtggcaaaaatgatcagaaagcagaAAAATGGCGTCATTCcaaaatt
acaccataccggcgaccagcgacgtccaagacggctctgcaattagatta
tttttctcgcttcgctcgcgttatatttgccgtagttcttgatgtttagg
aaaactttgatgtcaagataagcggagtgaaataatagacatgacacgNa
ttaaaattcacacaatttcccttgtttcttctcctctttattctgctaag
ggtccgaggggcagggccgaaagtcagctcgcaaccatagtccccccgga
aagcagctaggacacgcagacaaaaaagcgtgatagcgcaattttatgtg
gctttttataaaataactttgtcataacttcaataatttttcaaattcaa
caatgacttagatttacagcaaaataattatcgacatacttgtttaaagg
tccctttttacgaagaaagaattctagtttttaccgccttttgaatgtat
ttttgatgttgctgttgttctaacaaacttgtcttgtgattcttgtgctt
tattttataattgttcttttctttaacagagattctgtttaaaagatttc
ttttgttttgaaaagaattcgaatgtctcaaatcaaataaggtcgttaat
tacattcgaaaacataaaacaaaaaaaaagaaataaaaaaaagaaaaagt
ctatcaatcaaaacaaagtctttataaaacggcgcgaatctgatttaaca
cattttgtggagcaagaagcacaagtcatcttttgaaagaacaaaacatt
gcttgcaaaaacgaaagtgacacacaaacaaacaaaatgacacacagact
acggctattaatatatagattctCTGGTATTCTAATCcttttttattgaa
agtatgaattaaaaaggaaaatacaaTGTGTCCTCTTTCATTTGTCTTTT
CCTAATGCCCAAAGCCAAAGTTTTGTCAAACCTTTAAGCTAAAAAAGGAC
AAAGgcctttttgaaaataattcatttCCAAATTCAAACTCAAGTCTTTG
TAATATATAAATCGTAGAAATTTCTCTTCACAAAAGACAACCTTTGCAGA
GAATTTGAACCTTTACTTGGTGATTGGATTTTTGACTTATTCTTTAGTGG
TTGAGCTGGATTAATGCACTTAATCCAAAAACTGTGTGTCAATCTCTGGC
AAGCTGGCAGGCAGTAAAACTAAAGCGTAAGAtattctagtttttataaa
tatgaaaactggattgtaaggaagattctaaaaaataataactgtTTTCT
TAGACAACTACGTTTACattagtttcttgttttttttatactttCTACCA
TACTTTAGCATATAATAATGAgcatataaaaatattttatagtaTTTGGT
TATGATGCACCAAGCAGCTGCCTTTCTCAAATCAAACTTATATACCAACC
CTACAAATTTAATTGATGTCGAAAAATATGTCAGTCTTCTTTTGAGTTTT
GGGGAAACCCACTTGGAACATCTACTTGCATACTTACAACGCTACAATAA
ATCTATGGGACAACTAAAAACCATTGATGTATTCATTCGAAAATTGGATC
GTTTGGTTTGCACATTTAACTATAAATTCCGTACAGTATTTGATATCAAT
GAACTTTCAATTATTGTGTCTTATTTCGAGGATGTTCTATATTATGTTGG
CGAAATACTTGTTGCTG Coding sequence (CDS) from alignment at sc0000070:317964..321830+ >TCONS_00006736 ID=TCONS_00006736|Name=TCONS_00006736|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000070:317964..321830+ (Clytia hemisphaerica)
ATGATGCACCAAGCAGCTGCCTTTCTCAAATCAAACTTATATACCAACCC
TACAAATTTAATTGATGTCGAAAAATATGTCAGTCTTCTTTTGAGTTTTG
GGGAAACCCACTTGGAACATCTACTTGCATACTTACAACGCTACAATAAA
TCTATGGGACAACTAAAAACCATTGATGTATTCATTCGAAAATTGGATCG
TTTGGTTTGCACATTTAACTATAAATTCCGTACAGTATTTGATATCAATG
AACTTTCAATTATTGTGTCTTATTTCGAGGATGTTCTATATTATGTTGGC
GAAATACTTGTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006736-exon-sc0000070-1491911889:317964..318131 | TCONS_00006736-exon-sc0000070-1491911889:317964..318131 | Clytia hemisphaerica | exon |
| TCONS_00006736-exon-sc0000070-1510915933:317964..318131 | TCONS_00006736-exon-sc0000070-1510915933:317964..318131 | Clytia hemisphaerica | exon |
| TCONS_00006736-exon-sc0000070-1575043694:317964..318131 | TCONS_00006736-exon-sc0000070-1575043694:317964..318131 | Clytia hemisphaerica | exon |
| TCONS_00006736-exon-sc0000070-1491911889:321506..321830 | TCONS_00006736-exon-sc0000070-1491911889:321506..321830 | Clytia hemisphaerica | exon |
| TCONS_00006736-exon-sc0000070-1510915933:321506..321830 | TCONS_00006736-exon-sc0000070-1510915933:321506..321830 | Clytia hemisphaerica | exon |
| TCONS_00006736-exon-sc0000070-1575043694:321506..321830 | TCONS_00006736-exon-sc0000070-1575043694:321506..321830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:317964..321830 + |
Blast
The following BLAST results are available for this feature:
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