TCONS_00006729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006729
Unique NameTCONS_00006729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006729 ID=TCONS_00006729|Name=TCONS_00006729|organism=Clytia hemisphaerica|type=transcript|length=1152bp
CTGTTATAAAGGTGCTTTAAAAACAGCTGGTAAAGATTACGATTCTACAG
CATCTGCGGCCAAAAATTACGCAAAAGCTTCCAATGAGCTTTCCAAATTG
CTGGAAGACAATGATATAGAGAAACGGCAATGTCTTATAGATGTTATTTC
ACACTATCAACAAGCACTCGTATGTGGAAAAATCACAAAGTCAGCCTTAT
GGATCGATGATATAACATGCTCTCTCGGGAAAGTACTGCAAGAGGCGTTG
AATATATACGCTGATCTGCCAGCTGaagaaaaaatcaatgtttaTGAGTC
ATTTGCCTGTAGTTTAACAAATGGGTTTTTCTCTGATGATTTGTATGTTG
AAATTGCAAATCTCCTTCTCAGCCAAGCAATCAATTCTcttcaattaaaa
aattttaaagaaagtaaaatTTGTCTGCAACGAATGAGCCGCCCAATTGA
AGAACTTAAGCGGAGTAAAACGCCCGAGTTTACAGAACAAGCAGAGACGT
TGAAATTGGATTTGAAATATAATTTGGCGTTCACAGAATCTCTACAAACT
ATCCGTATAGGAGATGAGCTTTTGGAGAGCCATTTGAAAGACCAGGAAGA
CTTGAGCATGGATATGGTTTATACCGTAATTGACCGGTATCATGAAGCGA
TGGTGTTGGCTAGAGATATTGAGGTTGAAGTTGAAGCTATCGCCTTGAGT
CGTTTAGGATCGGTATACGCAAAAGTGTTGAAAAGGAAAGACCGTGCTAc
agaatgttttaaaaattccatTGAATTGGCCATGTCTCTCACGCCACGTG
TCATGAATGATACTCGAGCTCTCAGAAGAATTATCAGATCTTTCAACAGC
AGCTGAGAACCAAGAAACCAAAGGATTGGTTTTACACATCTTTGATAAAT
ATCCACCAAAATCAACGTCAGCTAGGCTTAAAATCCCAACAAAGGAGGAC
CTGGATGGTTTAGAAGAACCTAATTTGCGAAAATTCATCCAGAAGATGTT
ACTATATTATCACCCTGACAAGGTTGATGAATCAGAGCATGGAAGCAAGT
GGAAAGTGTTATGTAATGAAATCACCAAAATATTAACATCAAAACTTGAA
GTTTTAGAGTGCAAATAGGGATAGAAATCGAGAGAATCGTCAATGAAACT
TN
Run BLAST on NCBI

transcript from alignment at sc0000070:170428..174998+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006729 ID=TCONS_00006729|Name=TCONS_00006729|organism=Clytia hemisphaerica|type=transcript|length=4571bp|location=Sequence derived from alignment at sc0000070:170428..174998+ (Clytia hemisphaerica)
CTGTTATAAAGGTGCTTTAAAAACAGCTGGTAAAGATTACGATTCTACAG
CATCTGCGGCCAAAAATTACGCAAAAGCTTCCAATGAGCTTTCCAAATTG
CTGGAAGACAATGATATAGAGAAACGGCAATGTCTTATAGATGTTATTTC
ACACTATCAACAAGCACTCGTATGTGGAAAAATCACAAAGTCAGCCTTAT
GGATCGATGATATAACATGCTCTCTCGGGAAAGTACTGCAAGAGGCGTTG
AATATATACGCTGATCTGCCAGCTGaagaaaaaatcaatgtttaTGAGTC
ATTTGCCTGTAGTTTAACAAATGGGTTTTTCTCTGATGATTTGTATGTTG
AAATTGCAAATCTCCTTCTCAGCCAAGCAATCAATTCTcttcaattaaaa
aattttaaagaaagtaaaatTTGTCTGCAACGAATGAGCCGCCCAATTGA
AGAACTTAAGCGGAGTAAAACGCCCGAGTTTACAGAACAAGCAGAGACGT
TGAAATTGGATTTGAAATATAATTTGGCGTTCACAGAATCTCTACAAACT
ATCCGTATAGGTAATTTTTAGGAGTTTTAACGctcttttaaaatttctaa
atacaATTAAAGTGGTTTCAGTGGTCTACGTTAAGGGAATTTCCGTTCGA
AAGAAATTTGGTGGATTTGACGCTTTTAGCGAAAATTGTTTTTCTATCAT
CTGACATATTAAACTCTCGCCAAAATTCGATTTTTCCAGCCATCTGCAAA
TTTAAGTTACCCTTTAAAATTCCTTCCTTTAAGCTACAATGAAAAACTTA
AAAGCTTTTTTGCACATTTGGGGTTTTAGGAGATGAGCTTTTGGAGAGCC
ATTTGAAAGACCAGGAAGACTTGAGCATGGATATGGTTTATACCGTAATT
GACCGGTATCATGAAGCGATGGTGTTGGCTAGAGATATTGAGGTACGTAC
AAATTAATTTGCTACTTAACAGTTACAGTAGCAAAGATTTATAGTTCAAA
CCACGAACCATTTTTTTAGGATACGAGATGCTTTTGCATTTAAATTTGAA
CAATCAGAACCCGAATTCTCAGTTTAACCTTTAGTCCGCGAGGGACGCGT
ATACGCGTTCAGATGAATGTTAAAGTGATAATAGGGGCGATATATGATAT
CATTAACGCTGGTTATGAGCAGAATACTTTCTACAATAGACTTTTGAAAT
AGTCATTGAAATGTGTCCCTTTACAGTCCCTAAAAATCATGCTCGAAAGA
ATAATTTAATTCTTTCTCAATCCTAACCTAATTCTTCTTCAGTGTGGTGT
AATTTGGATGACCTGAAAACTACAGTGTAAACGCGCCCATTGTTTTACCA
TCAACACAAAATCATGTTTTTTTCTGgttaataagagacaaagatcGTGC
AATTCTTTGTTCCAATATTTTCAAGCAACAGTGAGAATACACCCTTATTC
TATTTCAGGTTGAAGTTGAAGCTATCGCCTTGAGTCGTTTAGGATCGGTA
TACGCAAAAGTGTTGAAAAGGAAAGACCGTGCTAcagaatgttttaaaaa
ttccatTGAATTGGCCATGTCTCTCACGCCACGTGTCATGAATGATACTC
GTAagtttttttgtaaacaaacttgTACCCAGTCCCTCGTCGCTTTCATC
TGTTCAAGTTCATCAGTAGAACCCAAAAGCAATATTAGTTGCTCTTAGTA
AGGTAGCACTTGTTATATACCAAGAGAAAATGTGATATAAATCGCACTGG
ACTAAGGTTCAAGTTCAATATGCTCCATGATTTTGAATCTAAGGAAGGAT
CCGCATGGACCCCTTCCCTTTTTGCGgactaaaaagtcaaaaaccttAAA
AACCTGTTTTGATCACCGTGAAAATTCATCAGAGCGAAAAATTTTCGAAT
GATAGCGTAGTAGTAGTTCGAATAATctcttactcttgtctcccgaatag
acgtccccccgctaattgttaaaagcaaaaaaaatcNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNttgctacggcactgtaacagcagttaa
aaaaattatgtcttCAAATCAACCCACCACCTCTTATTCAATCCACCCCA
cttattagaatttaaaaaattttcctacccccctgcttattcggaccccg
tctattcgggagacaagagtaagggTCCATTGTCACGTTGTTTCACCACA
ATGATGTTACATTTTGAATTACATTAGCATGGTATAAAGAAGCCAACGAT
ACCTTGTTAAAGTACCAGCAAAAATCAATCTTGGCACAAGACGCCAAAAG
AGAAGCAGAGCGACAGAAACATCTTACAGTGAGTAATACATAGAAATATC
TGAAGGATAAATTGAAAACTATAGAATGTCAATAAGGGCTACTGTGCCGA
TACGTATATCTGTTGCACTGACATCATTGTGATAGCAAACTACTAAACTT
CACGAATTTACATTACTTGTGGCCTCTCATACTACACGTGGTTACTGGAT
TGATCGAGTCTAAAACATGACACTGTTCCCGGATCTGTATGTGTGGGGAC
TATATAGCTCAGTGGGTAGAGAAGTTGCACTAGTAATGCGAAAGTCGTGA
GTTCAATCCTCACTTCAGCCTTCAGTTTAGTATTAGTAGTTCGCTATCTA
ACTGAGGTCAATGCGCAGATATTCATGCAAATCTTTGAATATCATAAAAC
GACTTCTTCgatttttctattgtaaacttgGTCAAGCCTTTGCAGGTGGT
ATCAGGAAAACATTCCAGGAAAAAAGGTGTTTGATAGTTGTTAAACAGGC
TTTATGACATGTTGTATTTCATTATTTCATTCAGGAGCTCTCAGAAGAAT
TATCAGATCTTTCAACAGCAGCTGAGAACCAAGAAACCAAAGGATTGGTT
TTACACATCTTTGATAAATATCCACCAAAATCAACGTCAGCTAGGCTTAA
AATCCCAACAAAGGAGGACCTGGATGGTTTAGAAGAACCTAATTTGCGAA
AATTCATCCAGAAGATGTTACTATATTATCACCCTGACAAGGTTGATGAA
TCAGAGCATGGAAGCAAGTGGAAAGTGTTATGTAATGAAATCACCAAAAT
ATTAACATCAAAACTTGAAGTTTTAGAGTGCAAATAGGGATAGAAATCGA
GAGAATCGTCAATGAAACTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003771XLOC_003771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006729-exon-sc0000070-1491911889:170428..170987TCONS_00006729-exon-sc0000070-1491911889:170428..170987Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1510915933:170428..170987TCONS_00006729-exon-sc0000070-1510915933:170428..170987Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1575043694:170428..170987TCONS_00006729-exon-sc0000070-1575043694:170428..170987Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1491911889:171257..171369TCONS_00006729-exon-sc0000070-1491911889:171257..171369Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1510915933:171257..171369TCONS_00006729-exon-sc0000070-1510915933:171257..171369Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1575043694:171257..171369TCONS_00006729-exon-sc0000070-1575043694:171257..171369Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1491911889:171886..172027TCONS_00006729-exon-sc0000070-1491911889:171886..172027Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1510915933:171886..172027TCONS_00006729-exon-sc0000070-1510915933:171886..172027Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1575043694:171886..172027TCONS_00006729-exon-sc0000070-1575043694:171886..172027Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1491911889:174662..174998TCONS_00006729-exon-sc0000070-1491911889:174662..174998Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1510915933:174662..174998TCONS_00006729-exon-sc0000070-1510915933:174662..174998Clytia hemisphaericaexon
TCONS_00006729-exon-sc0000070-1575043694:174662..174998TCONS_00006729-exon-sc0000070-1575043694:174662..174998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:170428..174998 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.202943	0.20046	0	0.0905655	0.0928631	5.37162e-05	0	0	0.35407	0	0.0640894	0	0	0	0	0	0.160434	0	0.323104	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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