TCONS_00006728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006728
Unique NameTCONS_00006728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006728 ID=TCONS_00006728|Name=TCONS_00006728|organism=Clytia hemisphaerica|type=transcript|length=987bp
AGAaaagagaaattcaaaaatgcaCTTATCTGTTATAAAGGTGCTTTAAA
AACAGCTGGTAAAGATTACGATTCTACAGCATCTGCGGCCAAAAATTACG
CAAAAGCTTCCAATGAGCTTTCCAAATTGCTGGAAGACAATGATATAGAG
AAACGGCAATGTCTTATAGATGTTATTTCACACTATCAACAAGCACTCGT
ATGTGGAAAAATCACAAAGTCAGCCTTATGGATCGATGATATAACATGCT
CTCTCGGGAAAGTACTGCAAGAGGCGTTGAATATATACGCTGATCTGCCA
GCTGaagaaaaaatcaatgtttaTGAGTCATTTGCCTGTAGTTTAACAAA
TGGGTTTTTCTCTGATGATTTGTATGTTGAAATTGCAAATCTCCTTCTCA
GCCAAGCAATCAATTCTcttcaattaaaaaattttaaagaaagtaaaatT
TGTCTGCAACGAATGAGCCGCCCAATTGAAGAACTTAAGCGGAGTAAAAC
GCCCGAGTTTACAGAACAAGCAGAGACGTTGAAATTGGATTTGAAATATA
ATTTGGCGTTCACAGAATCTCTACAAACTATCCGTATAGGAGATGAGCTT
TTGGAGAGCCATTTGAAAGACCAGGAAGACTTGAGCATGGATATGGTTTA
TACCGTAATTGACCGGTATCATGAAGCGATGGTGTTGGCTAGAGATATTG
AGGTTGAAGTTGAAGCTATCGCCTTGAGTCGTTTAGGATCGGTATACGCA
AAAGTGTTGAAAAGGAAAGACCGTGCTAcagaatgttttaaaaattccat
TGAATTGGCCATGTCTCTCACGCCACGTGTCATGAATGATACTCCATGGT
ATAAAGAAGCCAACGATACCTTGTTAAAGTACCAGCAAAAATCAATCTTG
GCACAAGACGCCAAAAGAGAAGCAGAGCGACAGAAACATCTTACAGAGCT
CTCAGAAGAATTATCAGATCTTTCAACAGCAGCTGAG
Run BLAST on NCBI

transcript from alignment at sc0000070:170399..175578+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006728 ID=TCONS_00006728|Name=TCONS_00006728|organism=Clytia hemisphaerica|type=transcript|length=5180bp|location=Sequence derived from alignment at sc0000070:170399..175578+ (Clytia hemisphaerica)
AGAaaagagaaattcaaaaatgcaCTTATCTGTTATAAAGGTGCTTTAAA
AACAGCTGGTAAAGATTACGATTCTACAGCATCTGCGGCCAAAAATTACG
CAAAAGCTTCCAATGAGCTTTCCAAATTGCTGGAAGACAATGATATAGAG
AAACGGCAATGTCTTATAGATGTTATTTCACACTATCAACAAGCACTCGT
ATGTGGAAAAATCACAAAGTCAGCCTTATGGATCGATGATATAACATGCT
CTCTCGGGAAAGTACTGCAAGAGGCGTTGAATATATACGCTGATCTGCCA
GCTGaagaaaaaatcaatgtttaTGAGTCATTTGCCTGTAGTTTAACAAA
TGGGTTTTTCTCTGATGATTTGTATGTTGAAATTGCAAATCTCCTTCTCA
GCCAAGCAATCAATTCTcttcaattaaaaaattttaaagaaagtaaaatT
TGTCTGCAACGAATGAGCCGCCCAATTGAAGAACTTAAGCGGAGTAAAAC
GCCCGAGTTTACAGAACAAGCAGAGACGTTGAAATTGGATTTGAAATATA
ATTTGGCGTTCACAGAATCTCTACAAACTATCCGTATAGGTAATTTTTAG
GAGTTTTAACGctcttttaaaatttctaaatacaATTAAAGTGGTTTCAG
TGGTCTACGTTAAGGGAATTTCCGTTCGAAAGAAATTTGGTGGATTTGAC
GCTTTTAGCGAAAATTGTTTTTCTATCATCTGACATATTAAACTCTCGCC
AAAATTCGATTTTTCCAGCCATCTGCAAATTTAAGTTACCCTTTAAAATT
CCTTCCTTTAAGCTACAATGAAAAACTTAAAAGCTTTTTTGCACATTTGG
GGTTTTAGGAGATGAGCTTTTGGAGAGCCATTTGAAAGACCAGGAAGACT
TGAGCATGGATATGGTTTATACCGTAATTGACCGGTATCATGAAGCGATG
GTGTTGGCTAGAGATATTGAGGTACGTACAAATTAATTTGCTACTTAACA
GTTACAGTAGCAAAGATTTATAGTTCAAACCACGAACCATTTTTTTAGGA
TACGAGATGCTTTTGCATTTAAATTTGAACAATCAGAACCCGAATTCTCA
GTTTAACCTTTAGTCCGCGAGGGACGCGTATACGCGTTCAGATGAATGTT
AAAGTGATAATAGGGGCGATATATGATATCATTAACGCTGGTTATGAGCA
GAATACTTTCTACAATAGACTTTTGAAATAGTCATTGAAATGTGTCCCTT
TACAGTCCCTAAAAATCATGCTCGAAAGAATAATTTAATTCTTTCTCAAT
CCTAACCTAATTCTTCTTCAGTGTGGTGTAATTTGGATGACCTGAAAACT
ACAGTGTAAACGCGCCCATTGTTTTACCATCAACACAAAATCATGTTTTT
TTCTGgttaataagagacaaagatcGTGCAATTCTTTGTTCCAATATTTT
CAAGCAACAGTGAGAATACACCCTTATTCTATTTCAGGTTGAAGTTGAAG
CTATCGCCTTGAGTCGTTTAGGATCGGTATACGCAAAAGTGTTGAAAAGG
AAAGACCGTGCTAcagaatgttttaaaaattccatTGAATTGGCCATGTC
TCTCACGCCACGTGTCATGAATGATACTCGTAagtttttttgtaaacaaa
cttgTACCCAGTCCCTCGTCGCTTTCATCTGTTCAAGTTCATCAGTAGAA
CCCAAAAGCAATATTAGTTGCTCTTAGTAAGGTAGCACTTGTTATATACC
AAGAGAAAATGTGATATAAATCGCACTGGACTAAGGTTCAAGTTCAATAT
GCTCCATGATTTTGAATCTAAGGAAGGATCCGCATGGACCCCTTCCCTTT
TTGCGgactaaaaagtcaaaaaccttAAAAACCTGTTTTGATCACCGTGA
AAATTCATCAGAGCGAAAAATTTTCGAATGATAGCGTAGTAGTAGTTCGA
ATAATctcttactcttgtctcccgaatagacgtccccccgctaattgtta
aaagcaaaaaaaatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNttgctacggcactgtaacagcagttaaaaaaattatgtcttCAAATCA
ACCCACCACCTCTTATTCAATCCACCCCActtattagaatttaaaaaatt
ttcctacccccctgcttattcggaccccgtctattcgggagacaagagta
agggTCCATTGTCACGTTGTTTCACCACAATGATGTTACATTTTGAATTA
CATTAGCATGGTATAAAGAAGCCAACGATACCTTGTTAAAGTACCAGCAA
AAATCAATCTTGGCACAAGACGCCAAAAGAGAAGCAGAGCGACAGAAACA
TCTTACAGTGAGTAATACATAGAAATATCTGAAGGATAAATTGAAAACTA
TAGAATGTCAATAAGGGCTACTGTGCCGATACGTATATCTGTTGCACTGA
CATCATTGTGATAGCAAACTACTAAACTTCACGAATTTACATTACTTGTG
GCCTCTCATACTACACGTGGTTACTGGATTGATCGAGTCTAAAACATGAC
ACTGTTCCCGGATCTGTATGTGTGGGGACTATATAGCTCAGTGGGTAGAG
AAGTTGCACTAGTAATGCGAAAGTCGTGAGTTCAATCCTCACTTCAGCCT
TCAGTTTAGTATTAGTAGTTCGCTATCTAACTGAGGTCAATGCGCAGATA
TTCATGCAAATCTTTGAATATCATAAAACGACTTCTTCgatttttctatt
gtaaacttgGTCAAGCCTTTGCAGGTGGTATCAGGAAAACATTCCAGGAA
AAAAGGTGTTTGATAGTTGTTAAACAGGCTTTATGACATGTTGTATTTCA
TTATTTCATTCAGGAGCTCTCAGAAGAATTATCAGATCTTTCAACAGCAG
CTGAGAACCAAGAAACCAAAGGATTGGTTTTACACATCTTTGATAAATAT
CCACCAAAATCAACGTCAGCTAGGCTTAAAATCCCAACAAAGGAGGACCT
GGATGGTTTAGAAGAACCTAATTTGCGAAAATTCATCCAGAAGATGTTAC
TATATTATCACCCTGACAAGGTTGATGAATCAGAGCATGGAAGCAAGTGG
AAAGTGTTATGTAATGAAATCACCAAAATATTAACATCAAAACTTGAAGT
TTTAGAGTGCAAATAGGGATAGAAATCGAGAGAATCGTCAATGAAACTTN
AGAAGCAGAGCGACAGAAACATCTTACAGTGAGTAATACATAGAAATATC
TGAAGGATAAATTGAAAACTATAGAATGTCAATAAGGGCTACTGTGCCGA
TACGTATATCTGTTGCACTGACATCATTGTGATAGCAAACTACTAAACTT
CACGAATTTACATTACTTGTGGCCTCTCATACTACACGTGGTTACTGGAT
TGATCGAGTCTAAAACATGACACTGTTCCCGGATCTGTATGTGTGGGGAC
TATATAGCTCAGTGGGTAGAGAAGTTGCACTAGTAATGCGAAAGTCGTGA
GTTCAATCCTCACTTCAGCCTTCAGTTTAGTATTAGTAGTTCGCTATCTA
ACTGAGGTCAATGCGCAGATATTCATGCAAATCTTTGAATATCATAAAAC
GACTTCTTCgatttttctattgtaaacttgGTCAAGCCTTTGCAGGTGGT
ATCAGGAAAACATTCCAGGAAAAAAGGTGTTTGATAGTTGTTAAACAGGC
TTTTAATATGACATGTTGTATTTCATTATTTCATTCAGGAGCTCTCAGAA
GAATTATCAGATCTTTCAACAGCAGCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003771XLOC_003771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006728-exon-sc0000070-1491911889:170399..170987TCONS_00006728-exon-sc0000070-1491911889:170399..170987Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1510915933:170399..170987TCONS_00006728-exon-sc0000070-1510915933:170399..170987Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1575043694:170399..170987TCONS_00006728-exon-sc0000070-1575043694:170399..170987Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1491911889:171257..171369TCONS_00006728-exon-sc0000070-1491911889:171257..171369Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1510915933:171257..171369TCONS_00006728-exon-sc0000070-1510915933:171257..171369Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1575043694:171257..171369TCONS_00006728-exon-sc0000070-1575043694:171257..171369Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1491911889:171886..172027TCONS_00006728-exon-sc0000070-1491911889:171886..172027Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1510915933:171886..172027TCONS_00006728-exon-sc0000070-1510915933:171886..172027Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1575043694:171886..172027TCONS_00006728-exon-sc0000070-1575043694:171886..172027Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1491911889:174055..174155TCONS_00006728-exon-sc0000070-1491911889:174055..174155Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1510915933:174055..174155TCONS_00006728-exon-sc0000070-1510915933:174055..174155Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1575043694:174055..174155TCONS_00006728-exon-sc0000070-1575043694:174055..174155Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1491911889:175537..175578TCONS_00006728-exon-sc0000070-1491911889:175537..175578Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1510915933:175537..175578TCONS_00006728-exon-sc0000070-1510915933:175537..175578Clytia hemisphaericaexon
TCONS_00006728-exon-sc0000070-1575043694:175537..175578TCONS_00006728-exon-sc0000070-1575043694:175537..175578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:170399..175578 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.221568	0	0.201558	0	0	0	0	0.0555762	0.494691	0	1.56189	0.38242	0.4556	0.152434	0	0.0214311	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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