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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006726 ID=TCONS_00006726|Name=TCONS_00006726|organism=Clytia hemisphaerica|type=transcript|length=1920bp
CAAAAGGATGCCAAAGTAAATTATCCGAGATCATTTAAAGGTAATTGATT
ATATAATAGAACAATAGTTTGGGTGCTATTATCTGATTAAAACTTTATAA
CCCCGCATATAATGAGAGCCGTTTTATTTGATACATTTCAATCAATCTTG
CATTTTGAGAGGTACGGGTGCAGATATTTTGATTTGTTCCTGCCGGAAGA
tcaacatgaaattttggattGGATTTATTGGCGTTCTTTTTGTAATCGAT
GTCAGTGTTGCATTGACAGCCAAACCAGTAACTGGCGTTTCACCTCCACC
CATTACTTGTCCAAAATCTTTATGTATAAATCGGACGGATGGGAATTACG
CTTACCAACTTAACGGTGCCAAGAATGATCATTATTTTTTACAATGTTCT
GGCGGTGAAGCTTCATGTCAACCATGCTTTCCACAATCGTTGGTTTTCAA
AGAAGAATGCAACCAATGTTTGACGTCACTTAGATCCGAATGTGTTGATA
ACGGTCAAGGAGTTCCACTTCCTGAATATTTTTGTCCTGACAAATGTGGA
CGAGAAGGTCTGCCAGAATTCTTCACTGGCAATATCGAAGACCCTTACAA
TCCTGAACATTACGTTGTTTGTTTAGCTGGAAAACTAGCTGCTTGTATCA
AATGTCCCGAAGGTCTGGAATTCAATGAGATGTGGAATGCATGTTTATAC
AGTGGTAAATATAAAACCGAACCAACACAAAATATTGTGGACAACGAATC
TGACTTTATATAATCCGAAACAGGATAGTAAAGATAAGCTATGTCTCAAA
ATAATGAACTTATAAATAACCCATTGGACATATATGTCAAAACAAAGTGA
ACTTTTCAGGATAAGTAACATCCTATTGATAGAATTGATTGATCATTCTT
TAATTTCCCAAAAGGAAAAGGAATATTAGTTTTTGTTTACTAGCTAATAA
TGGCTGCCAATCTTTCCACCCCTCGTATTTACGGAGCTCCTGTCGGTATG
GTGTATTGTGAATATGAAAAACCTTCTCCCTTGAATACTCTAAAGGACTG
ACGATTACTTATGTTGAAAAATGAAGTTCTGCTATAAGGTATTTTCTATA
AATCTAGGTAAGTTAGCTTGTCGTCTGAATCGCGGGACTCTATAAATATA
CTTtctataagaaactcttttcgctagaggattaGCAGAATGCATGTTAT
AATTTTCAACCTGATATACCGATGAATATTTGTGGATTGAGCAAGTTGAA
TTTTTCTTACGGTAAATTTAAGTCTTACGGTAATTCTTTAAAGTTATGGT
AAACTAGGTTAAATTTCATGATTGAGGGTGGTAGGGCGGTGAGAGAGGTA
ACTAGAAAACGTAAACAACTTTCAATAATTGTCATCAGTTGGTCTGGCAA
GTGACGTTTTACAAATGAATTTGTTGGAGTCACAGGTGCTCGCTAAACAG
GGTCGGATACAGGAGGTAGGCTATCTTATTCATGACATGGAGAGTAATTA
GTTTCCATATAAGGtaatacgataataaagtgcactctcctccattggtt
atagcctccctctgtatccgagcctgctGAAAAGACATTGGTGATTGTTT
TCCGTTCAAATTATTAAAGTATatcttttttttgtaatttttaaataaaC
TATATATCcgattatattttttgttcatccaATTTTTAGCTTATTTCTTC
ActtatattttcaaaagaatcttTCGATTGGCATTTCTTGATGataattt
ttctgatatttcAACTAACgataaaaagaaaagtatgtAATTTGTATTCT
TAAGGTAGTTTTTGTAAGATAGCCATAATTTGCCATTTTTTAGAATAAAT
GATGAATTATATTTATTgtaagatatttttgaaaatattttgaagaaaat
taaaaaaaagttgttttctc Run BLAST on NCBI protein sequence of TCONS_00006726-protein >TCONS_00006726-protein ID=TCONS_00006726-protein|Name=TCONS_00006726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MKFWIGFIGVLFVIDVSVALTAKPVTGVSPPPITCPKSLCINRTDGNYAY
QLNGAKNDHYFLQCSGGEASCQPCFPQSLVFKEECNQCLTSLRSECVDNG
QGVPLPEYFCPDKCGREGLPEFFTGNIEDPYNPEHYVVCLAGKLAACIKC
PEGLEFNEMWNACLYSGKYKTEPTQNIVDNESDFI Run BLAST on NCBI transcript from alignment at sc0000070:157040..160540+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006726 ID=TCONS_00006726|Name=TCONS_00006726|organism=Clytia hemisphaerica|type=transcript|length=3501bp|location=Sequence derived from alignment at sc0000070:157040..160540+ (Clytia hemisphaerica)
CAAAAGGATGCCAAAGTAAATTATCCGAGATCATTTAAAGGTAATTGATT
ATATAATAGAACAATAGTTTGGGTGCTATTATCTGATTAAAACTTTATAA
CCCCGCATATAATGAGAGCCGTTTTATTTGATACATTTCAATCAATCTTG
CATTTTGAGAGGTACGGGTGCAGATATTTTGATTTGTTCCTGCCGGAAGA
tcaacatgaaattttggattGGATTTATTGGCGTTCTTTTTGTAATCGGT
AAGTTATAAATTGcagaagatttttgaaaaattcatctCAACGGAGGATA
TCTCTTGTTTCACCGATCTTTAGACATCCCTTAAGgcattgtttgaaatt
gttGGAAGTAGCAACCTTCGAGtacaataatatttttcaaaacctttcca
AAAAGCTACAGCGATGCTTTAGTCGaccctatcgtctacacaaggtCACT
ACAAAAAGGGAATAATTTAGGAGGCGGTAAATTTGATGATGGAAGTGGTG
GAGTAAACAGTGATGGTGGTACGTTTTCTTTATCTCTAACGGGCGACAGC
ATTGTCTTTAGAAACTTTGATCGAAAATTTGAGGATTCGTTTTATATTTC
ATTTCGTTTGAACGTTTGAACAAGGCTGTCATTGTTATTGCTTTCGATCA
AACAAGTCGATCAAAACTCTACTTAACATCACATTAACGCAGAATTGATA
TCTTCCTCTTAACTTGCATAACCCCGCATACTAAATACTCtagcaaaatc
tttaaaatcgaATCGTTAATTGGTTTGTGTTTTTCTGAGACCGCAATCAG
ATGTTATTTTAATAGGTGTCCAAAATGAGGAATATTGAATTGCAATTTAA
ATTGCTATAGTTAGGATTTATCAGTCACATGGAAATAGTTTAATAACATT
CTTTCATGAAAAATGATTCGTGAACATGATTCAAATTTGTCCATTGAAAT
AAAAAGACATGTATGTCTCAGAGGAATGTCTAATGAAAACGTGAAAATCT
ACCCCTGTTTACgccattttaaaatttatgattcGATATGCAGCCTTAGT
TTGCTCTACTACgcccatcagtaaaatcaaaaggtTAAAATGTAAAGTAG
TCGCTCTTGATAACGGATGTATTGAGCGGAGACTCTGATGTTAGATAGTA
AAAACGACGCACTCCATGTCTCGCATGCCTCACATATATCTAGGTACTCT
CATCTAACCGTAGCCTATTCTAGACGTCACTCGcattttttctacgcaat
taacagAATGAAAAATCCCGGCTTTTGGTGAGGTGTTCGCTAATCTAACC
ACTGTCTTCCACTTTCTTTTATTTACTACAGATGTCAGTGTTGCATTGAC
AGCCAAACCAGTAACTGGCGTTTCACCTCCACCCATTACTTGTCCAAAAT
CTTTATGTATAAATCGGACGGATGGGAATTACGCTTACCAACTTAACGGT
GCCAAGAATGATCATTATTTTTTACAATGTTCTGGCGGTGAAGCTTCATG
TCAACCATGCTTTCCACAATCGTTGGTTTTCAAAGAAGAATGCAACCAAT
GTTTGACGTCACTTAGATGTAAGTTTACTACACTACACTCTTAACTAACA
ACAACGTCGTTTGAAAGTAAGGAAGTTAGGAATCGAGTTCGTAGCGATGG
TCGAATGGTCAAGGCTTCAAAGCATGAAACCAGCGGGTTGCTGGTTATTT
TAAACATCCATTAAACGGCACCTCTAGACATCCCTGTCTCGCAATGCAAT
GATTGTCTtggacacccctgtctcacagccccggtgaaaatCTAGTAGAG
atgattttggagtgcaatttttaacattgaatttcgaatagggatgaaat
caaagtcaatttcccagaaATTCCAGGCTATTCTTCcaaattattgtcaa
attttccagtggagctggggtcccagcgggtgtGTGACACAGGGCTGTTG
TTGGGAAAATGGGGCCAAGATTTGACCCTGAAACTTCATCCCAAGGTTAA
GGGAATCTAAATTTCGAAGTTAAAAGGCTAGAAGCTTTGGTAATAACTTC
ATATTCTATTTTTCAGCCGAATGTGTTGATAACGGTCAAGGAGTTCCACT
TCCTGAATATTTTTGTCCTGACAAATGTGGACGAGAAGGTCTGCCAGAAT
TCTTCACTGGCAATATCGAAGACCCTTACAATCCTGAACATTACGTTGTT
TGTTTAGCTGGAAAACTAGCTGCTTGTATCAAATGTCCCGAAGGTCTGGA
ATTCAATGAGATGTGGAATGCATGTTTATACAGTGGTAAATATAAAACCG
AACCAACACAAAATATTGTGGACAACGAATCTGACTTTATATAATCCGAA
ACAGGATAGTAAAGATAAGCTATGTCTCAAAATAATGAACTTATAAATAA
CCCATTGGACATATATGTCAAAACAAAGTGAACTTTTCAGGATAAGTAAC
ATCCTATTGATAGAATTGATTGATCATTCTTTAATTTCCCAAAAGGAAAA
GGAATATTAGTTTTTGTTTACTAGCTAATAATGGCTGCCAATCTTTCCAC
CCCTCGTATTTACGGAGCTCCTGTCGGTATGGTGTATTGTGAATATGAAA
AACCTTCTCCCTTGAATACTCTAAAGGACTGACGATTACTTATGTTGAAA
AATGAAGTTCTGCTATAAGGTATTTTCTATAAATCTAGGTAAGTTAGCTT
GTCGTCTGAATCGCGGGACTCTATAAATATACTTtctataagaaactctt
ttcgctagaggattaGCAGAATGCATGTTATAATTTTCAACCTGATATAC
CGATGAATATTTGTGGATTGAGCAAGTTGAATTTTTCTTACGGTAAATTT
AAGTCTTACGGTAATTCTTTAAAGTTATGGTAAACTAGGTTAAATTTCAT
GATTGAGGGTGGTAGGGCGGTGAGAGAGGTAACTAGAAAACGTAAACAAC
TTTCAATAATTGTCATCAGTTGGTCTGGCAAGTGACGTTTTACAAATGAA
TTTGTTGGAGTCACAGGTGCTCGCTAAACAGGGTCGGATACAGGAGGTAG
GCTATCTTATTCATGACATGGAGAGTAATTAGTTTCCATATAAGGtaata
cgataataaagtgcactctcctccattggttatagcctccctctgtatcc
gagcctgctGAAAAGACATTGGTGATTGTTTTCCGTTCAAATTATTAAAG
TATatcttttttttgtaatttttaaataaaCTATATATCcgattatattt
tttgttcatccaATTTTTAGCTTATTTCTTCActtatattttcaaaagaa
tcttTCGATTGGCATTTCTTGATGataatttttctgatatttcAACTAAC
gataaaaagaaaagtatgtAATTTGTATTCTTAAGGTAGTTTTTGTAAGA
TAGCCATAATTTGCCATTTTTTAGAATAAATGATGAATTATATTTATTgt
aagatatttttgaaaatattttgaagaaaattaaaaaaaagttgttttct
c Coding sequence (CDS) from alignment at sc0000070:157040..160540+ >TCONS_00006726 ID=TCONS_00006726|Name=TCONS_00006726|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000070:157040..160540+ (Clytia hemisphaerica)
atgaaattttggattGGATTTATTGGCGTTCTTTTTGTAATCGATGTCAG
TGTTGCATTGACAGCCAAACCAGTAACTGGCGTTTCACCTCCACCCATTA
CTTGTCCAAAATCTTTATGTATAAATCGGACGGATGGGAATTACGCTTAC
CAACTTAACGGTGCCAAGAATGATCATTATTTTTTACAATGTTCTGGCGG
TGAAGCTTCATGTCAACCATGCTTTCCACAATCGTTGGTTTTCAAAGAAG
AATGCAACCAATGTTTGACGTCACTTAGATCCGAATGTGTTGATAACGGT
CAAGGAGTTCCACTTCCTGAATATTTTTGTCCTGACAAATGTGGACGAGA
AGGTCTGCCAGAATTCTTCACTGGCAATATCGAAGACCCTTACAATCCTG
AACATTACGTTGTTTGTTTAGCTGGAAAACTAGCTGCTTGTATCAAATGT
CCCGAAGGTCTGGAATTCAATGAGATGTGGAATGCATGTTTATACAGTGG
TAAATATAAAACCGAACCAACACAAAATATTGTGGACAACGAATCTGACT
TTATATAAatgaaattttggattGGATTTATTGGCGTTCTTTTTGTAATC
GATGTCAGTGTTGCATTGACAGCCAAACCAGTAACTGGCGTTTCACCTCC
ACCCATTACTTGTCCAAAATCTTTATGTATAAATCGGACGGATGGGAATT
ACGCTTACCAACTTAACGGTGCCAAGAATGATCATTATTTTTTACAATGT
TCTGGCGGTGAAGCTTCATGTCAACCATGCTTTCCACAATCGTTGGTTTT
CAAAGAAGAATGCAACCAATGTTTGACGTCACTTAGATCCGAATGTGTTG
ATAACGGTCAAGGAGTTCCACTTCCTGAATATTTTTGTCCTGACAAATGT
GGACGAGAAGGTCTGCCAGAATTCTTCACTGGCAATATCGAAGACCCTTA
CAATCCTGAACATTACGTTGTTTGTTTAGCTGGAAAACTAGCTGCTTGTA
TCAAATGTCCCGAAGGTCTGGAATTCAATGAGATGTGGAATGCATGTTTA
TACAGTGGTAAATATAAAACCGAACCAACACAAAATATTGTGGACAACGA
ATCTGACTTTATATAAatgaaattttggattGGATTTATTGGCGTTCTTT
TTGTAATCGATGTCAGTGTTGCATTGACAGCCAAACCAGTAACTGGCGTT
TCACCTCCACCCATTACTTGTCCAAAATCTTTATGTATAAATCGGACGGA
TGGGAATTACGCTTACCAACTTAACGGTGCCAAGAATGATCATTATTTTT
TACAATGTTCTGGCGGTGAAGCTTCATGTCAACCATGCTTTCCACAATCG
TTGGTTTTCAAAGAAGAATGCAACCAATGTTTGACGTCACTTAGATCCGA
ATGTGTTGATAACGGTCAAGGAGTTCCACTTCCTGAATATTTTTGTCCTG
ACAAATGTGGACGAGAAGGTCTGCCAGAATTCTTCACTGGCAATATCGAA
GACCCTTACAATCCTGAACATTACGTTGTTTGTTTAGCTGGAAAACTAGC
TGCTTGTATCAAATGTCCCGAAGGTCTGGAATTCAATGAGATGTGGAATG
CATGTTTATACAGTGGTAAATATAAAACCGAACCAACACAAAATATTGTG
GACAACGAATCTGACTTTATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006726-exon-sc0000070-1491911889:157040..157287 | TCONS_00006726-exon-sc0000070-1491911889:157040..157287 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1510915933:157040..157287 | TCONS_00006726-exon-sc0000070-1510915933:157040..157287 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1575043694:157040..157287 | TCONS_00006726-exon-sc0000070-1575043694:157040..157287 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1491911889:158371..158607 | TCONS_00006726-exon-sc0000070-1491911889:158371..158607 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1510915933:158371..158607 | TCONS_00006726-exon-sc0000070-1510915933:158371..158607 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1575043694:158371..158607 | TCONS_00006726-exon-sc0000070-1575043694:158371..158607 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1491911889:159106..160540 | TCONS_00006726-exon-sc0000070-1491911889:159106..160540 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1510915933:159106..160540 | TCONS_00006726-exon-sc0000070-1510915933:159106..160540 | Clytia hemisphaerica | exon |
| TCONS_00006726-exon-sc0000070-1575043694:159106..160540 | TCONS_00006726-exon-sc0000070-1575043694:159106..160540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:157040..160540 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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