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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006716 ID=TCONS_00006716|Name=TCONS_00006716|organism=Clytia hemisphaerica|type=transcript|length=1563bp
GTCCGGCAACACGGGCCGTCGCTCGAAAATGTTAGTATTTTTAGACGGCC
GTACAGAGAGTGcataaaattttcaagatgGCTGCGAACAGTACTCTTGA
TGCCAGTGAGAGTGAAGTTGATTACTTTAATGATAAAGAGTTGGAGAGTT
ATCTTGCTTCTGAGGAGTTCCAGATCGATGAAAAGAAAGACACTTCGTTT
AAATGTTTGTATTGTCCAAAAGTTTGTTTATCAAAACGTGGGATGACACG
CCATGTTAATTGTAAACACCCAGAGAAAAGTGTGCAAAAacccaaacaac
aacaaaaagtcaCTGCAGAGGAAATCTTGCCGTTGGATAAGTTTAAAACC
ATCCTTGGAAACTGTCTTGCTATCTTATCCAAAGATGAATGTTATCCAAC
TGAAATCACATCAAGTTTCAATGTCAATCATCACGACGTATCACCTTATT
ATGAAACTCTTTATGATGTTATCAAACCGTTAGTGGTGTCATTTAAATTG
AAAGGTGATGCTGAAAAATTCTATCCATCATTCTTATCTACTGTTACAGA
AGCAATGTTTCCTGGTCTTGATGGTTTTTGCAGCAATGTTTTGAGATATG
AACTTGCAAATCATGTTTTGGCTTTCTTATCAAAAGCCAAACTTGTGAAC
AATACAATTGAGTTTGAGCTTACAGAGACCAATTTTACGGACAAAGATCT
TCACATTATAAATTATTTGAGCGGTTGTGTTGTTGGAACATTTTACAGGC
GAGTAAGATTCAAAATGGACCCATGTGACTACCAGAAGGACTGCTTAATT
TTATTGGATGCATTTCGGTTCAAAGAGGGTGGTGCTCAAACTGATACCCG
TGAGCACAAATTGATTGACGTTAGAAACAGAGGTGGTTTATGGAAAGTTC
GTAAAGGTGGAGTGACTCTCTTTAAAATTTGTGAAACTTATTTTGTTTCA
GCTACAAAAGATTTTGTTACTAACATTGATGCCAACCTATTGGCTGAAAT
GATGATACAAGACCCAATGGTTTTATCACAATTTGgaacaatttttaaat
cttgtGACCCTCAAATAAAGCGTGAAGTTGGTATGAATCTTCTGGAGGAA
ATGCTTATCTTTTATTTTCGCTTACGATCCTTTTCTTATGCAAAGCAACA
GcagcaaaaacataaaatgaaaaagcATCCAATCGTAAAGGATCATTACG
GAGTGATCTTAAAAAATCATGTCCAGATTCTGGAAGGACTGATATGAACA
TAAATTAatggtaccttaagggaagaaatttttatgCGGAATTTGATTTT
GCAGTTTACAGCTCAAAGTTCAGAAGTTTcacaggaatttaattttgcgg
ttgaggaaattttttgttcataatatggcctattttgccctacaaataca
aattttagggtaatttattttgaatcctgaaaatatttgtgtttcgcgga
attaaattttgcggaatttaCTAAAAAGCACGAAATTatattccgcaaaa
atttcttcacttaagTTACATGAATCTATGGCCTAATCTTGTCAATCCCT
GTCTAATTTTGTC Run BLAST on NCBI protein sequence of TCONS_00006716-protein >TCONS_00006716-protein ID=TCONS_00006716-protein|Name=TCONS_00006716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=389bp
MAANSTLDASESEVDYFNDKELESYLASEEFQIDEKKDTSFKCLYCPKVC
LSKRGMTRHVNCKHPEKSVQKPKQQQKVTAEEILPLDKFKTILGNCLAIL
SKDECYPTEITSSFNVNHHDVSPYYETLYDVIKPLVVSFKLKGDAEKFYP
SFLSTVTEAMFPGLDGFCSNVLRYELANHVLAFLSKAKLVNNTIEFELTE
TNFTDKDLHIINYLSGCVVGTFYRRVRFKMDPCDYQKDCLILLDAFRFKE
GGAQTDTREHKLIDVRNRGGLWKVRKGGVTLFKICETYFVSATKDFVTNI
DANLLAEMMIQDPMVLSQFGTIFKSCDPQIKREVGMNLLEEMLIFYFRLR
SFSYAKQQQQKHKMKKHPIVKDHYGVILKNHVQILEGLI Run BLAST on NCBI transcript from alignment at sc0000069:669680..671242 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006716 ID=TCONS_00006716|Name=TCONS_00006716|organism=Clytia hemisphaerica|type=transcript|length=1563bp|location=Sequence derived from alignment at sc0000069:669680..671242 (Clytia hemisphaerica)
GACAAAATTAGACAGGGATTGACAAGATTAGGCCATAGATTCATGTAAct
taagtgaagaaatttttgcggaatatAATTTCGTGCTTTTTAGtaaattc
cgcaaaatttaattccgcgaaacacaaatattttcaggattcaaaataaa
ttaccctaaaatttgtatttgtagggcaaaataggccatattatgaacaa
aaaatttcctcaaccgcaaaattaaattcctgtgAAACTTCTGAACTTTG
AGCTGTAAACTGCAAAATCAAATTCCGcataaaaatttcttcccttaagg
taccatTAATTTATGTTCATATCAGTCCTTCCAGAATCTGGACATGATTT
TTTAAGATCACTCCGTAATGATCCTTTACGATTGGATgctttttcatttt
atgtttttgctgCTGTTGCTTTGCATAAGAAAAGGATCGTAAGCGAAAAT
AAAAGATAAGCATTTCCTCCAGAAGATTCATACCAACTTCACGCTTTATT
TGAGGGTCacaagatttaaaaattgttcCAAATTGTGATAAAACCATTGG
GTCTTGTATCATCATTTCAGCCAATAGGTTGGCATCAATGTTAGTAACAA
AATCTTTTGTAGCTGAAACAAAATAAGTTTCACAAATTTTAAAGAGAGTC
ACTCCACCTTTACGAACTTTCCATAAACCACCTCTGTTTCTAACGTCAAT
CAATTTGTGCTCACGGGTATCAGTTTGAGCACCACCCTCTTTGAACCGAA
ATGCATCCAATAAAATTAAGCAGTCCTTCTGGTAGTCACATGGGTCCATT
TTGAATCTTACTCGCCTGTAAAATGTTCCAACAACACAACCGCTCAAATA
ATTTATAATGTGAAGATCTTTGTCCGTAAAATTGGTCTCTGTAAGCTCAA
ACTCAATTGTATTGTTCACAAGTTTGGCTTTTGATAAGAAAGCCAAAACA
TGATTTGCAAGTTCATATCTCAAAACATTGCTGCAAAAACCATCAAGACC
AGGAAACATTGCTTCTGTAACAGTAGATAAGAATGATGGATAGAATTTTT
CAGCATCACCTTTCAATTTAAATGACACCACTAACGGTTTGATAACATCA
TAAAGAGTTTCATAATAAGGTGATACGTCGTGATGATTGACATTGAAACT
TGATGTGATTTCAGTTGGATAACATTCATCTTTGGATAAGATAGCAAGAC
AGTTTCCAAGGATGGTTTTAAACTTATCCAACGGCAAGATTTCCTCTGCA
GtgactttttgttgttgtttgggtTTTTGCACACTTTTCTCTGGGTGTTT
ACAATTAACATGGCGTGTCATCCCACGTTTTGATAAACAAACTTTTGGAC
AATACAAACATTTAAACGAAGTGTCTTTCTTTTCATCGATCTGGAACTCC
TCAGAAGCAAGATAACTCTCCAACTCTTTATCATTAAAGTAATCAACTTC
ACTCTCACTGGCATCAAGAGTACTGTTCGCAGCcatcttgaaaattttat
gCACTCTCTGTACGGCCGTCTAAAAATACTAACATTTTCGAGCGACGGCC
CGTGTTGCCGGAC Coding sequence (CDS) from alignment at sc0000069:669680..671242 >TCONS_00006716 ID=TCONS_00006716|Name=TCONS_00006716|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000069:669680..671242 (Clytia hemisphaerica)
TCATATCAGTCCTTCCAGAATCTGGACATGATTTTTTAAGATCACTCCGT
AATGATCCTTTACGATTGGATgctttttcattttatgtttttgctgCTGT
TGCTTTGCATAAGAAAAGGATCGTAAGCGAAAATAAAAGATAAGCATTTC
CTCCAGAAGATTCATACCAACTTCACGCTTTATTTGAGGGTCacaagatt
taaaaattgttcCAAATTGTGATAAAACCATTGGGTCTTGTATCATCATT
TCAGCCAATAGGTTGGCATCAATGTTAGTAACAAAATCTTTTGTAGCTGA
AACAAAATAAGTTTCACAAATTTTAAAGAGAGTCACTCCACCTTTACGAA
CTTTCCATAAACCACCTCTGTTTCTAACGTCAATCAATTTGTGCTCACGG
GTATCAGTTTGAGCACCACCCTCTTTGAACCGAAATGCATCCAATAAAAT
TAAGCAGTCCTTCTGGTAGTCACATGGGTCCATTTTGAATCTTACTCGCC
TGTAAAATGTTCCAACAACACAACCGCTCAAATAATTTATAATGTGAAGA
TCTTTGTCCGTAAAATTGGTCTCTGTAAGCTCAAACTCAATTGTATTGTT
CACAAGTTTGGCTTTTGATAAGAAAGCCAAAACATGATTTGCAAGTTCAT
ATCTCAAAACATTGCTGCAAAAACCATCAAGACCAGGAAACATTGCTTCT
GTAACAGTAGATAAGAATGATGGATAGAATTTTTCAGCATCACCTTTCAA
TTTAAATGACACCACTAACGGTTTGATAACATCATAAAGAGTTTCATAAT
AAGGTGATACGTCGTGATGATTGACATTGAAACTTGATGTGATTTCAGTT
GGATAACATTCATCTTTGGATAAGATAGCAAGACAGTTTCCAAGGATGGT
TTTAAACTTATCCAACGGCAAGATTTCCTCTGCAGtgactttttgttgtt
gtttgggtTTTTGCACACTTTTCTCTGGGTGTTTACAATTAACATGGCGT
GTCATCCCACGTTTTGATAAACAAACTTTTGGACAATACAAACATTTAAA
CGAAGTGTCTTTCTTTTCATCGATCTGGAACTCCTCAGAAGCAAGATAAC
TCTCCAACTCTTTATCATTAAAGTAATCAACTTCACTCTCACTGGCATCA
AGAGTACTGTTCGCAGCcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006716-exon-sc0000069-1491911889:669680..671242 | TCONS_00006716-exon-sc0000069-1491911889:669680..671242 | Clytia hemisphaerica | exon |
| TCONS_00006716-exon-sc0000069-1510915933:669680..671242 | TCONS_00006716-exon-sc0000069-1510915933:669680..671242 | Clytia hemisphaerica | exon |
| TCONS_00006716-exon-sc0000069-1575043694:669680..671242 | TCONS_00006716-exon-sc0000069-1575043694:669680..671242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:669680..671242 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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