TCONS_00006711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006711
Unique NameTCONS_00006711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006711 ID=TCONS_00006711|Name=TCONS_00006711|organism=Clytia hemisphaerica|type=transcript|length=373bp
CAGAACGATGTGTTTGTATCACTTGTTCCATTTCCTCCTTCTTCTCTCCT
TCATATCGATGTAGAATTTTACAGAATCGTTGAgttattttttatacttt
taagttttatttttctggTGGGCGCAAAACTCAAAGTTTAACTGTCATCT
ACTATATCTCAGTGCAGTTATAAGGTATGCTTAGGTCTattcaacttttg
atattttttcaactgTTTAGAACTTCAAGGTATTGGGAGGACTCTATTAA
AGACATTCAATTACCAGCGAGGACCTTTTTTAAacatcttattcctagaa
atgaaaatCTGTTTCTCCTCAATACCtgaatttttaatctcaaagtatct
tccctagaaaatttggtttgttt
Run BLAST on NCBI

transcript from alignment at sc0000069:479037..479409

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006711 ID=TCONS_00006711|Name=TCONS_00006711|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at sc0000069:479037..479409 (Clytia hemisphaerica)
aaacaaaccaaattttctagggaagatactttgagattaaaaattcaGGT
ATTGAGGAGAAACAGattttcatttctaggaataagatgtTTAAAAAAGG
TCCTCGCTGGTAATTGAATGTCTTTAATAGAGTCCTCCCAATACCTTGAA
GTTCTAAAcagttgaaaaaatatcaaaagttgaatAGACCTAAGCATACC
TTATAACTGCACTGAGATATAGTAGATGACAGTTAAACTTTGAGTTTTGC
GCCCAccagaaaaataaaacttaaaagtataaaaaataacTCAACGATTC
TGTAAAATTCTACATCGATATGAAGGAGAGAAGAAGGAGGAAATGGAACA
AGTGATACAAACACATCGTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003757XLOC_003757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006711-exon-sc0000069-1491911889:479037..479409TCONS_00006711-exon-sc0000069-1491911889:479037..479409Clytia hemisphaericaexon
TCONS_00006711-exon-sc0000069-1510915933:479037..479409TCONS_00006711-exon-sc0000069-1510915933:479037..479409Clytia hemisphaericaexon
TCONS_00006711-exon-sc0000069-1575043694:479037..479409TCONS_00006711-exon-sc0000069-1575043694:479037..479409Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:479037..479409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29797	2.32049	1.71456	3.11523	0	0.691587	0	0.260376	0.182295	0.451604	2.19169	1.15258	0.143903	0.44824	0.245676	0.790944	0.162396	0.166451	0	0	0.418316	0	0.744111	1.12751	0	0.414576	0.296628	0.31657	0.720321	1.22315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top