TCONS_00006707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006707
Unique NameTCONS_00006707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006707 ID=TCONS_00006707|Name=TCONS_00006707|organism=Clytia hemisphaerica|type=transcript|length=649bp
gaggacagcgctaattattttcataaatgaGTGGGTTATAGGCAATGCAT
AAAAGATGAAagcaaaatatttgaataaataataaatattacAGCAGTTA
AAACCTTCTTACAAGAAAATAActaaaataatctgaaaaaaagaTTAACT
TTGTCCGTTTTagcaaaagtacaaattttaccaatgacCATGCCGGAAAG
GGGGCTTCGGAAAAGCTTGTCTGTTTATTAAGTTGTTGGAGGgtaaaatt
tgtacttttgctCCCTAAATTTGTATAACAAAAAGTATATTATAGAtaga
ttaaaaattgaaaataataaataatgagAGACATATTCTACTAGGAAAAA
AACTCCTTAAGTTCTCCTTTTCTCTGTGTTAAAACTCTGTAACAAGACAG
GTAAACAAGCGAGAAAGTAAGTTTACTTTTATatcttttaacttttcgag
tcCTATTAGATTGAATCTTCTCATCCCTTACTCTCCCTTTTATTCCCCAA
CCTCACCAAACATTCCCATACCCTCCGCCCAATCCCGGAAAAAACCTACC
ACGCTATAACCCTGCTCACATCCCATATCACTACACACACCCCGTCTAAC
CCCGAAATCCCCCGTCCCATCTTACTAACCTCTCCCGCCCCATCTTACC
Run BLAST on NCBI

transcript from alignment at sc0000069:291740..292388

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006707 ID=TCONS_00006707|Name=TCONS_00006707|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000069:291740..292388 (Clytia hemisphaerica)
GGTAAGATGGGGCGGGAGAGGTTAGTAAGATGGGACGGGGGATTTCGGGG
TTAGACGGGGTGTGTGTAGTGATATGGGATGTGAGCAGGGTTATAGCGTG
GTAGGTTTTTTCCGGGATTGGGCGGAGGGTATGGGAATGTTTGGTGAGGT
TGGGGAATAAAAGGGAGAGTAAGGGATGAGAAGATTCAATCTAATAGgac
tcgaaaagttaaaagatATAAAAGTAAACTTACTTTCTCGCTTGTTTACC
TGTCTTGTTACAGAGTTTTAACACAGAGAAAAGGAGAACTTAAGGAGTTT
TTTTCCTAGTAGAATATGTCTctcattatttattattttcaatttttaat
ctaTCTATAATATACTTTTTGTTATACAAATTTAGGGagcaaaagtacaa
attttacCCTCCAACAACTTAATAAACAGACAAGCTTTTCCGAAGCCCCC
TTTCCGGCATGgtcattggtaaaatttgtacttttgctAAAACGGACAAA
GTTAAtctttttttcagattattttagTTATTTTCTTGTAAGAAGGTTTT
AACTGCTgtaatatttattatttattcaaatattttgctTTCATCTTTTA
TGCATTGCCTATAACCCACtcatttatgaaaataattagcgctgtcctc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003753XLOC_003753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006707-exon-sc0000069-1491911889:291740..292388TCONS_00006707-exon-sc0000069-1491911889:291740..292388Clytia hemisphaericaexon
TCONS_00006707-exon-sc0000069-1510915933:291740..292388TCONS_00006707-exon-sc0000069-1510915933:291740..292388Clytia hemisphaericaexon
TCONS_00006707-exon-sc0000069-1575043694:291740..292388TCONS_00006707-exon-sc0000069-1575043694:291740..292388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:291740..292388 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0806312	0	0	0	0.652414	0	7.04916	8.15213	2.37812	1.3466	2.85916	3.0609	9.43805	9.41168	6.77619	11.9888	9.68473	7.75511	0.0857128	0.0896923	10.0567	13.1188	9.24502	10.1701	4.24194	6.95356	1.76898	0.117994	0	0.182361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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