|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006705 ID=TCONS_00006705|Name=TCONS_00006705|organism=Clytia hemisphaerica|type=transcript|length=1344bp
tAAGGGAAAATTTGAAGCAATAATAAAAGGGAAAAACCGAAACAAACAGA
AGGTATCCAATTTCCGAAGGTTTCGAATATCCAGACAAGCCACACCCAAT
TTTATTTATCaatatatatgtatatatcAAAGAAGAATTAAGAAGAGTTA
ATTCAACCAGCAATCGaaggaaagtgaaatttttgaagTATCGAATAATT
GATTGAAATCGATCGAATCGAAGATGGAATCGAAAGAAAACACCAGTGTC
AACAAAACATCAGAGGagaacaataacaaacaaagtAAACCGAACCGCCC
GACTACCCTGGGCGGAATCGGGGGTGGTAGTAGATCATTATTAACCACAC
AATCAGTAAAAATCAAGAACAGTTCAAATCAAGATGCTGCTTACCCAGGG
TACAGGCGTCAAAGCTTGCCTGCATCCTCGTTTACCAAACTTCAAGTTCC
AGGGCAACAATCCTTCGATAGTTGTGACCAGGACGTTGGAAGCTGCCCTG
GGTCTCCCTCAAGACGTACTTACACGCCCTTACTGACTCCCGCCCTATCA
ATCAGTTCTttagtatcgagtttgaacggGTCTTTTGAGAATCTCAATCT
TGATGACGAAGCATATTTCGATAATGATAAAAGCCCGAACGACCCAGTTT
CTATGGCAACCAGAAAGCTTCATTTCACATTCGAGATGGCCAATCGTGAA
GAAATTGTCAATAAtcgattaaaatattttttcaatacgtTAGACAGTGA
AGAATATTTTGAGAACCACAATGGGAAAGATATTGGACCTTTGATGAATA
TGATTCCGCAAAGTCCGATGGTCGACGGACCAGGGATTGGATTTAGCGAA
ACTCCAACTCAGCAGCAACCTActcaaagttgaaattgaaggaataacat
tttttgaaacaaattttgatagaaGGTTGGTTGGATAAGCAATCGGAAAC
ATGGACATATTGGCTGCTCTTGTTGTCATGTGGAAACCATTCTCAAGGGA
ATTAGTCTAATTAAGCTGAGATGGTTTCTACATGGTagtaaaaaacattt
aaagcGAACGGGCCTtatttcgaattagagagagatttGAATAACAGAAT
ATCGAATTAGCAAGAGTACACTGTAAAATGACATGGAATCATTTCTGAGC
TTGGTAGACATACAAGAAAGGAGAAAACATCAAATGGTTGTAATAATGCA
GAGTCAGCATTATAATTTTTGTGAAGATGGGAAAAGATGTTAAAGAACCT
TTCTAAGAAACAGCtcgttcaattttttaaaatcgTTTTTTTTGAATTGT
AGAATATCTGGCagttttatgttaaaaagatgATTATACTTGGA Run BLAST on NCBI protein sequence of WegO-2 putative cnidarian restricted protein >TCONS_00006705-protein ID=TCONS_00006705-protein|Name=WegO-2 putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MESKENTSVNKTSEENNNKQSKPNRPTTLGGIGGGSRSLLTTQSVKIKNS
SNQDAAYPGYRRQSLPASSFTKLQVPGQQSFDSCDQDVGSCPGSPSRRTY
TPLLTPALSISSLVSSLNGSFENLNLDDEAYFDNDKSPNDPVSMATRKLH
FTFEMANREEIVNNRLKYFFNTLDSEEYFENHNGKDIGPLMNMIPQSPMV
DGPGIGFSETPTQQQPTQS Run BLAST on NCBI transcript from alignment at sc0000069:210372..211715 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006705 ID=TCONS_00006705|Name=TCONS_00006705|organism=Clytia hemisphaerica|type=transcript|length=1344bp|location=Sequence derived from alignment at sc0000069:210372..211715 (Clytia hemisphaerica)
TCCAAGTATAATcatctttttaacataaaactGCCAGATATTCTACAATT
CAAAAAAAAcgattttaaaaaattgaacgaGCTGTTTCTTAGAAAGGTTC
TTTAACATCTTTTCCCATCTTCACAAAAATTATAATGCTGACTCTGCATT
ATTACAACCATTTGATGTTTTCTCCTTTCTTGTATGTCTACCAAGCTCAG
AAATGATTCCATGTCATTTTACAGTGTACTCTTGCTAATTCGATATTCTG
TTATTCaaatctctctctaattcgaaataAGGCCCGTTCgctttaaatgt
tttttactACCATGTAGAAACCATCTCAGCTTAATTAGACTAATTCCCTT
GAGAATGGTTTCCACATGACAACAAGAGCAGCCAATATGTCCATGTTTCC
GATTGCTTATCCAACCAACCttctatcaaaatttgtttcaaaaaatgtta
ttccttcaatttcaactttgagTAGGTTGCTGCTGAGTTGGAGTTTCGCT
AAATCCAATCCCTGGTCCGTCGACCATCGGACTTTGCGGAATCATATTCA
TCAAAGGTCCAATATCTTTCCCATTGTGGTTCTCAAAATATTCTTCACTG
TCTAacgtattgaaaaaatattttaatcgaTTATTGACAATTTCTTCACG
ATTGGCCATCTCGAATGTGAAATGAAGCTTTCTGGTTGCCATAGAAACTG
GGTCGTTCGGGCTTTTATCATTATCGAAATATGCTTCGTCATCAAGATTG
AGATTCTCAAAAGACccgttcaaactcgatactaaAGAACTGATTGATAG
GGCGGGAGTCAGTAAGGGCGTGTAAGTACGTCTTGAGGGAGACCCAGGGC
AGCTTCCAACGTCCTGGTCACAACTATCGAAGGATTGTTGCCCTGGAACT
TGAAGTTTGGTAAACGAGGATGCAGGCAAGCTTTGACGCCTGTACCCTGG
GTAAGCAGCATCTTGATTTGAACTGTTCTTGATTTTTACTGATTGTGTGG
TTAATAATGATCTACTACCACCCCCGATTCCGCCCAGGGTAGTCGGGCGG
TTCGGTTTactttgtttgttattgttctCCTCTGATGTTTTGTTGACACT
GGTGTTTTCTTTCGATTCCATCTTCGATTCGATCGATTTCAATCAATTAT
TCGATActtcaaaaatttcactttccttCGATTGCTGGTTGAATTAACTC
TTCTTAATTCTTCTTTgatatatacatatatattGATAAATAAAATTGGG
TGTGGCTTGTCTGGATATTCGAAACCTTCGGAAATTGGATACCTTCTGTT
TGTTTCGGTTTTTCCCTTTTATTATTGCTTCAAATTTTCCCTTa Coding sequence (CDS) from alignment at sc0000069:210372..211715 >TCONS_00006705 ID=TCONS_00006705|Name=TCONS_00006705|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000069:210372..211715 (Clytia hemisphaerica)
tcaactttgagTAGGTTGCTGCTGAGTTGGAGTTTCGCTAAATCCAATCC
CTGGTCCGTCGACCATCGGACTTTGCGGAATCATATTCATCAAAGGTCCA
ATATCTTTCCCATTGTGGTTCTCAAAATATTCTTCACTGTCTAacgtatt
gaaaaaatattttaatcgaTTATTGACAATTTCTTCACGATTGGCCATCT
CGAATGTGAAATGAAGCTTTCTGGTTGCCATAGAAACTGGGTCGTTCGGG
CTTTTATCATTATCGAAATATGCTTCGTCATCAAGATTGAGATTCTCAAA
AGACccgttcaaactcgatactaaAGAACTGATTGATAGGGCGGGAGTCA
GTAAGGGCGTGTAAGTACGTCTTGAGGGAGACCCAGGGCAGCTTCCAACG
TCCTGGTCACAACTATCGAAGGATTGTTGCCCTGGAACTTGAAGTTTGGT
AAACGAGGATGCAGGCAAGCTTTGACGCCTGTACCCTGGGTAAGCAGCAT
CTTGATTTGAACTGTTCTTGATTTTTACTGATTGTGTGGTTAATAATGAT
CTACTACCACCCCCGATTCCGCCCAGGGTAGTCGGGCGGTTCGGTTTact
ttgtttgttattgttctCCTCTGATGTTTTGTTGACACTGGTGTTTTCTT
TCGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006705-exon-sc0000069-1491911889:210372..211715 | TCONS_00006705-exon-sc0000069-1491911889:210372..211715 | Clytia hemisphaerica | exon |
| TCONS_00006705-exon-sc0000069-1510915933:210372..211715 | TCONS_00006705-exon-sc0000069-1510915933:210372..211715 | Clytia hemisphaerica | exon |
| TCONS_00006705-exon-sc0000069-1575043694:210372..211715 | TCONS_00006705-exon-sc0000069-1575043694:210372..211715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:210372..211715 . |
Blast
The following BLAST results are available for this feature:
|
