TCONS_00006704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006704
Unique NameTCONS_00006704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006704 ID=TCONS_00006704|Name=TCONS_00006704|organism=Clytia hemisphaerica|type=transcript|length=299bp
CTTTGATAGATTTAGGTTTAATATAAAATCGgtatataaaataataattc
attTTCTATTACATGTTCTTTTGCtacaaaattttccaagaaagagtatg
tttaTATTGAGTCATTATCACACGTAGAGCATCAGTTCTACAGATAGCTG
GTCAAGGCTTGGGAAGAAGGCAAGAAAATTTAAGTTATGAAGAAATGATA
TTGGTACCCCTCAATTGGCTAGCATGTTGTAGAATGGGCAAGGATGGAGT
GAACTGTAAAGGAGGTACTACCAATAACAAGTTTTTCATAATTACTGAG
Run BLAST on NCBI

transcript from alignment at sc0000069:178978..179276

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006704 ID=TCONS_00006704|Name=TCONS_00006704|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at sc0000069:178978..179276 (Clytia hemisphaerica)
CTCAGTAATTATGAAAAACTTGTTATTGGTAGTACCTCCTTTACAGTTCA
CTCCATCCTTGCCCATTCTACAACATGCTAGCCAATTGAGGGGTACCAAT
ATCATTTCTTCATAACTTAAATTTTCTTGCCTTCTTCCCAAGCCTTGACC
AGCTATCTGTAGAACTGATGCTCTACGTGTGATAATGACTCAATAtaaac
atactctttcttggaaaattttgtaGCAAAAGAACATGTAATAGAAaatg
aattattattttatatacCGATTTTATATTAAACCTAAATCTATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003750XLOC_003750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006704-exon-sc0000069-1491911889:178978..179276TCONS_00006704-exon-sc0000069-1491911889:178978..179276Clytia hemisphaericaexon
TCONS_00006704-exon-sc0000069-1510915933:178978..179276TCONS_00006704-exon-sc0000069-1510915933:178978..179276Clytia hemisphaericaexon
TCONS_00006704-exon-sc0000069-1575043694:178978..179276TCONS_00006704-exon-sc0000069-1575043694:178978..179276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:178978..179276 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91132	0	0.823431	0	0.530772	0	0	2.04699	1.67512	1.57499	7.56269	3.34417	6.05618	7.09426	14.0232	23.0669	5.06039	15.1305	0.494854	1.3414	5.95825	5.02294	1.62558	1.92031	5.78587	8.30159	0.202073	2.53009	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top