TCONS_00006703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006703
Unique NameTCONS_00006703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006703 ID=TCONS_00006703|Name=TCONS_00006703|organism=Clytia hemisphaerica|type=transcript|length=280bp
AAGGAGCTGCTCTGGTTTCGGTTGTGAATTAAGTAGTCTCCCAGCAGTTG
TGTTGAAGTGTTGGTTGAGGGTGTCAGGCTCAGCGTGGATCTTTTGAGGA
TTCGGCTTNAGTGTTGGTTGAGGGTGTCAGGCTCAGCGTGGATCTTTTGA
AGATTCGGTTTGAGGATACGATGGATGGTAGACCACACCTCTTTCGGTCG
TTTAGAGGATAGGGCACGACGGAAGAAAGAAGATTTGGTTACACGAATGA
GAGTCTTTAGTTCATTACGAGCTTTACGGN
Run BLAST on NCBI

transcript from alignment at sc0000069:127172..127451

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006703 ID=TCONS_00006703|Name=TCONS_00006703|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0000069:127172..127451 (Clytia hemisphaerica)
NCCGTAAAGCTCGTAATGAACTAAAGACTCTCATTCGTGTAACCAAATCT
TCTTTCTTCCGTCGTGCCCTATCCTCTAAACGACCGAAAGAGGTGTGGTC
TACCATCCATCGTATCCTCAAACCGAATCTTCAAAAGATCCACGCTGAGC
CTGACACCCTCAACCAACACTNAAGCCGAATCCTCAAAAGATCCACGCTG
AGCCTGACACCCTCAACCAACACTTCAACACAACTGCTGGGAGACTACTT
AATTCACAACCGAAACCAGAGCAGCTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003749XLOC_003749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006703-exon-sc0000069-1491911889:127172..127451TCONS_00006703-exon-sc0000069-1491911889:127172..127451Clytia hemisphaericaexon
TCONS_00006703-exon-sc0000069-1510915933:127172..127451TCONS_00006703-exon-sc0000069-1510915933:127172..127451Clytia hemisphaericaexon
TCONS_00006703-exon-sc0000069-1575043694:127172..127451TCONS_00006703-exon-sc0000069-1575043694:127172..127451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:127172..127451 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.46059	1.09545	2.00208	1.38821	1.33337	1.05365	0	2.38013	0.416596	0.516021	0	0.658495	1.97274	0.341452	0	0.301255	0	0.760775	0	0.549925	0.708978	1.72373	1.13367	0.515335	0	0.473711	0.677879	0.723451	2.19485	1.67715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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