TCONS_00006702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006702
Unique NameTCONS_00006702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006702 ID=TCONS_00006702|Name=TCONS_00006702|organism=Clytia hemisphaerica|type=transcript|length=352bp
NNGAACTGCAGAGCGCCATCGAATCGGTCCAAAATGAAATAGACAACATC
AACCTTTGGTCTGAGCAAAACAATCTTTGTCTAaacacaaaaaagacaaa
aatggcAATCTTTTCGACCAGACAACTTGCACAACGCCATTCCCTCGCGG
AACTCGTCACGGTTATCAAAAGCGCTGGACAGGATATTGAACAGgtcaag
aatttcaaaattctcggTGTTAGATTTAATGAGCATCTAGACTGGACTGG
ACATGTCAACCATACCATGAGATCTTGTTTTGCCACGTTACGCTGCTTAA
AACGATTCAAGAACACCGCATCATGGCAGCAGCGCAAGATGCTTATGGAG
NN
Run BLAST on NCBI

protein sequence of TCONS_00006702-protein

>TCONS_00006702-protein ID=TCONS_00006702-protein|Name=TCONS_00006702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
ELQSAIESVQNEIDNINLWSEQNNLCLNTKKTKMAIFSTRQLAQRHSLAE
LVTVIKSAGQDIEQVKNFKILGVRFNEHLDWTGHVNHTMRSCFATLRCLK
RFKNTASWQQRKMLME
Run BLAST on NCBI

transcript from alignment at sc0000069:98257..98608

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006702 ID=TCONS_00006702|Name=TCONS_00006702|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0000069:98257..98608 (Clytia hemisphaerica)
NNCTCCATAAGCATCTTGCGCTGCTGCCATGATGCGGTGTTCTTGAATCG
TTTTAAGCAGCGTAACGTGGCAAAACAAGATCTCATGGTATGGTTGACAT
GTCCAGTCCAGTCTAGATGCTCATTAAATCTAACAccgagaattttgaaa
ttcttgacCTGTTCAATATCCTGTCCAGCGCTTTTGATAACCGTGACGAG
TTCCGCGAGGGAATGGCGTTGTGCAAGTTGTCTGGTCGAAAAGATTgcca
tttttgtcttttttgtgttTAGACAAAGATTGTTTTGCTCAGACCAAAGG
TTGATGTTGTCTATTTCATTTTGGACCGATTCGATGGCGCTCTGCAGTTC
NN

Coding sequence (CDS) from alignment at sc0000069:98257..98608

>TCONS_00006702 ID=TCONS_00006702|Name=TCONS_00006702|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000069:98257..98608 (Clytia hemisphaerica)
CTCCATAAGCATCTTGCGCTGCTGCCATGATGCGGTGTTCTTGAATCGTT
TTAAGCAGCGTAACGTGGCAAAACAAGATCTCATGGTATGGTTGACATGT
CCAGTCCAGTCTAGATGCTCATTAAATCTAACAccgagaattttgaaatt
cttgacCTGTTCAATATCCTGTCCAGCGCTTTTGATAACCGTGACGAGTT
CCGCGAGGGAATGGCGTTGTGCAAGTTGTCTGGTCGAAAAGATTgccatt
tttgtcttttttgtgttTAGACAAAGATTGTTTTGCTCAGACCAAAGGTT
GATGTTGTCTATTTCATTTTGGACCGATTCGATGGCGCTCTGCAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003748XLOC_003748Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006702-proteinTCONS_00006702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006702-exon-sc0000069-1491911889:98257..98608TCONS_00006702-exon-sc0000069-1491911889:98257..98608Clytia hemisphaericaexon
TCONS_00006702-exon-sc0000069-1510915933:98257..98608TCONS_00006702-exon-sc0000069-1510915933:98257..98608Clytia hemisphaericaexon
TCONS_00006702-exon-sc0000069-1575043694:98257..98608TCONS_00006702-exon-sc0000069-1575043694:98257..98608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:98257..98608 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.874678	1.86061	1.04419	1.10302	7.02599	7.53573	4.33031	4.94365	0.530435	3.22882	1.93622	1.03097	10.3979	11.0242	2.62003	3.49352	1.57285	3.26571	7.06831	9.20743	3.63106	1.35865	0.15809	1.70503	2.22319	5.40102	22.6925	31.1716	3.69343	2.84271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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