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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006689 ID=TCONS_00006689|Name=TCONS_00006689|organism=Clytia hemisphaerica|type=transcript|length=673bp
CTCACCCAATGGACACCCTTCGGTCAATGTTCAACATCGTGTGGCGATGG
TATGCAATCACGAACCCGTTCATGCACCAACCCACCACCTGCTCATAATG
GAAAAGAATGTGATGGTGATGTGGAAGAATATCAAGAATGCAAATTGAAA
GAATGTCCAGttGATGGAGGTTATAGTTCATGGTCATCGTATTCTGAATG
TTCAGAACCATGTGGAGATGGTTTAATGACAAGAAAACGAACATGTACAA
ATCCTTCACCTGCTCATGGTGGAAAACAATGTCAAGGAGCTACTATTGAA
GAAAAACAATGCAAAGTCAAAGAATGCCCAGTGGATGGAGGTTACAGTTC
ATGGTCATCGTATTCTGAATGTTCAGAAGCATGTGGAGATGGTTTAATGA
CAAGAAAACGAACATGTACAAATCCTTCACCTGCTCATGGTGGAAAACAA
TGTCAAGGAGCTTCTACTGAAGAAAAACAATGCAAAGTCAAAGAATGTCC
AGTCGATGGAGGTTACAGTTCATGGTCATCGTATTCTGAATGTTCAGAAG
CATGTGGAGATGGTTTAATGACAAGAAAACGAACATGTACAAATCCTTCA
CCTGCTCATGGTGGAAAACAATGTCAAGGAGCTTCTACTGAAGAAAAACA
ATGCAAAGTCAAAGAATGCCCAG Run BLAST on NCBI transcript from alignment at sc0000069:537070..541140- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006689 ID=TCONS_00006689|Name=TCONS_00006689|organism=Clytia hemisphaerica|type=transcript|length=4071bp|location=Sequence derived from alignment at sc0000069:537070..541140- (Clytia hemisphaerica)
CTCACCCAATGGACACCCTTCGGTCAATGTTCAACATCGTGTGGCGATGG
TATGCAATCACGAACCCGTTCATGCACCAACCCACCACCTGCTCATAATG
GAAAAGAATGTGATGGTGATGTGGAAGAATATCAAGAATGCAAATTGAAA
GAATGTCCAGGTTTGACATTTGTTTGACAATACAGGGTGTCCGGAAAAAA
AAGTATCGAATTCGAACATGATTCTGAGTAGAAGGTTGTTACGTGTGTTT
AACAAAATGTAAGAAAATATACAGTATACCAACACAATAATTGTTTTTAC
AATAGTCATTATGATTAAAAAGAAGTAACTTTCTTTACAATTTTCATGAC
GTTAAAGTTATTGGGAATTGTTTTTTTGTAAAAGTTATTCATAAAAGATG
TCTTGTGACAGTTTATATGACAAAGAGAGAAACTTTGATAAACATTGCAA
ATTTAGTGAAACACACACAAGAACCTTCTTTTTATAGAAGTGGTACGACT
CGATACTTTTTTTGGGTCACCTTGTAAAGTCCTGCAAAGATCACCAACCT
AGCAGACATTAAGGAGTGAGCTGGAGTTTCTATAAGATACTTCACTAATT
GGTCATTTGAAGTAATGACGCGTTCTTTAGAGAAAGTAACAAAATCTCAT
TATTGCTTTTCTTTCATTTCAGTTGATGGAGGTTATAGTTCATGGTCATC
GTATTCTGAATGTTCAGAACCATGTGGAGATGGTTTAATGACAAGAAAAC
GAACATGTACAAATCCTTCACCTGCTCATGGTGGAAAACAATGTCAAGGA
GCTACTATTGAAGAAAAACAATGCAAAGTCAAAGAATGCCCAGGTATATT
CACGCTTCTACTTGATTCATATGTTTCTATCACTAAATAAACAAAAAGGG
AATCCATGTATGCCATTATATAACCAAAAATCCGATATTGATCCCCTGAC
AAGGGAAAGTTGCCCGGACAATGCACTCTTAATCTGCCATGGCAAAGACT
TTTTCAATGAGCCATTTCTGCCCTAAACTCTCTTAAAGAATATGGCATTT
ATCCATGACATAGTCGGAATGACACGGACGAGTGAAAGATTTAGTTATTT
GTTTGGGTTTATTACAGGAAATATGTTTTGTATACGTGTTTGTCCCAAAG
CAATTTTGAGTACACCTGAAAATCGGACCGGTATTTAGACAGTCTTTTAA
GGGCCGGTAAAATTACTGGTCAAATAGTACAAAAAGGCCGGTCATTTCAA
TGCATCCGGTCCATAACCAGGCTCGATTAACCGGTCGACATCCTTTTTAA
AACAATTTGTTTGATGTAATCGTCATTAACAAACACTAATGAACGGCCCG
GACTGGTAAAACGTGCATCCATGAGTGTCTACGAGCGGTCAGGACCGTTT
GAAATCAGATTTTATATAAGGTCTAAAGGCCAATCTAAAACAAAAACTTG
ACTGCTATTAGACCGCTCGTAATACCGTACCAAGACCGGTCCGATTTTCA
GTTAATTTAAGTCGTCCAGTTTGTGTAATAATGCAAAGTATTAGCTAGTA
CCCAGCTCTCTGGCTAGTCACCATCCAAAAACTGACCTCCTTGCGCACCT
CGCATCGTATCTATTTATATGGAGGAAGGTTCTGAGAGATCCGTGTCAAA
TAGGAATCGAATATCAGTCACATACCCATGGCACTCTAAGCGCTCAAAGT
GCTTGTCCCAATACTCCTTTTTTAATAAATAATCATTTTCTTTCGTTTCA
GTGGATGGAGGTTACAGTTCATGGTCATCGTATTCTGAATGTTCAGAAGC
ATGTGGAGATGGTTTAATGACAAGAAAACGAACATGTACAAATCCTTCAC
CTGCTCATGGTGGAAAACAATGTCAAGGAGCTTCTACTGAAGAAAAACAA
TGCAAAGTCAAAGAATGTCCAGGTATAATTCCTAGACAACTTTTTATCCA
ATGGGAAATAATTATTGTAGATTTCATACTGACTTACTACTAGACCTTGC
TTTCAACTCATTTAGATAAATGTTACGCCCTTTCTCCTAGCTTGAGAGCA
TGAGTGTCTTTGTCCTTGGTTTTAGAATCAAAGGAAGGAATAGATTTCTT
GGTAGATATTAGATTGCCATATATTTAATGTATTCTTCTTTTAAGTCAAT
GGAGGTTTCAGTGAGTGGTCATCGTACGGTGTTTGTAGCAAGACCTGTGG
AGGCGGAACACAAGAACGAAAACGAGAATGTAACACTCCCAAACCAGCTC
ATGGTGGCGAAAACTGCAAAGGTGAAACACAACAATCAAGAACGTGTAAA
CTCAAAGAATGTCCTGGTAGGTTTTTCTTTTCTCAAATTTCATTGTATTA
TCTGTGCTATACTTTTGAATCTTCGGTCATTTCAATTTTTTGCAGGGCAC
CTTTCACTGCAAAAATAACCTTGTTCTTAATTGGAGGGTACACATTTACA
AGCTGTGCTAAAATACAAAATTTTAATTATCATTTTACCTACCTTCAAAG
TTACTACCGGTCAATCCAAGACATTTCAGACATTTTATTTTTATATTTAG
AAGCCCCCCCTCTACTACTGTAGCTATACGACATTTCAACATTAGTCATT
AGGGAGGTTAATTAATTACAGACCTACCTTAAGGAAACTATTTTTCGCGA
TTTCTCGGCAACACTGTAAAAATTTAGAACCCGCGATATATAAATTTGGA
CATTTTTCTTTAAAAAATCTGAAAAAAGATTTTTTTTTTCGACCGCACAA
ATTAGCTCTCGTTGAAATTAGCTCCCTTATGAAAGTTGGAAAGATATTTT
CTCTGTTTGCTAACTACAGTCGACGGTGGTGTAAGCCAATGGTCAGCATT
TAGCAAATGTTCAAAATCGTGCGGTGTAGGAGAACACGAAAGAACACGAA
CCTGCACCAACCCGCCACCACAACATGGAGGAAAAGAATGCGATGAAGAT
TTGAAAGAAGTTCAAGAATGTCAAATCAAGAAATGCCCAGGTATTTAAAA
TGTGTTTTATAGGACTTCAGTCGGCTCTCTCTAATTCGATCTCAACGGGG
TATCTAATTTCTATTTATTATTCTATTTTTATCTATCTATATTCTAATCT
AATTTGTTCGAGTTATAGAGAGGTTCGAATTATAGAAAGCATTTAGCTAA
GGTTTTTCCTTGAAGGGGAATAACGGTTTGTTCGAGTTATGGGACGTTTC
GAATGATAGAAGTTTGAATTAGCGAATATTGACTGTATTTTTAATTTTTT
CTGAAAAAGTGTATCCTAGACTCAAACAATGCATTATTCCGATCTCAGAG
AGATGAAAATGACGAGATATTAATAAAAGAGGAGTATTTTACCCATTCGA
CACGCTCTCTGTTTGTGTTTCAGTCAATGGTGGCTACTCTGATTGGTCAG
AATTCGGTGAATGTTCAACAGAATGCGGACCTGGTGTACAAAGCAGAGAA
AGAGAGTGCAACAATCCCTCACCAGCTCATGGTGGCAAAGGATGTGTTGG
TGAAGCTAAAGAAACAAGAAAATGTGAAGATATGCCCTGTCCTGGTAAGA
TAATCTGCATGTTGTTTAATATGAGAAAAACTTTTTCGTTTCGAGATTTT
TCGTTGTTTAGTATTGCACTTTCTGATTTCCTGAGCTATTTGCTACAGTT
AATAGACCTGTTCTCTGAAGGTAGTTTTTATGTTTTGCCCTGAATTTTGC
TTTGCTATTTCACATCGTATAATTGGGGACTTCATCGGATATGCTGATAA
AGTCACGAAAGATGACGAAAATTTCTACCTAAGCAGTCGCTTCATTTTTT
ATGTTTTAAAAATTTGCTGCTTCAACATTTTACGTTTTGTATAATTGGGG
AAATATAGTTTTGATACTTTTAAAATTCCATCCTTTTCCTTCAATTTTAG
TCGATGGAGGTTACAGTTCATGGTCATCGTATTCTGAATGTTCAGAAGCA
TGTGGAGATGGTTTAATGACAAGAAAACGAACATGTACAAATCCTTCACC
TGCTCATGGTGGAAAACAATGTCAAGGAGCTTCTACTGAAGAAAAACAAT
GCAAAGTCAAAGAATGCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006689-exon-sc0000069-1575043694:540981..541140 | TCONS_00006689-exon-sc0000069-1575043694:540981..541140 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1575043694:540298..540468 | TCONS_00006689-exon-sc0000069-1575043694:540298..540468 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1575043694:539219..539389 | TCONS_00006689-exon-sc0000069-1575043694:539219..539389 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1575043694:537070..537240 | TCONS_00006689-exon-sc0000069-1575043694:537070..537240 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1510915933:540981..541140 | TCONS_00006689-exon-sc0000069-1510915933:540981..541140 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1510915933:540298..540468 | TCONS_00006689-exon-sc0000069-1510915933:540298..540468 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1510915933:539219..539389 | TCONS_00006689-exon-sc0000069-1510915933:539219..539389 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1510915933:537070..537240 | TCONS_00006689-exon-sc0000069-1510915933:537070..537240 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1491911889:540981..541140 | TCONS_00006689-exon-sc0000069-1491911889:540981..541140 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1491911889:540298..540468 | TCONS_00006689-exon-sc0000069-1491911889:540298..540468 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1491911889:539219..539389 | TCONS_00006689-exon-sc0000069-1491911889:539219..539389 | Clytia hemisphaerica | exon |
| TCONS_00006689-exon-sc0000069-1491911889:537070..537240 | TCONS_00006689-exon-sc0000069-1491911889:537070..537240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:537070..541140 - |
Blast
BLAST of TCONS_00006689 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 1.591e-43 Identity = 99/224 (44.20%), Postives = 138/224 (61.61%), Query Frame = 1
Query: 1 LTQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECP 672
+QW+ + CS +CG G+Q R+R C P PA+ GK C G E + C+ K CPVDG +S WS + EC+ CG G TR RTC NPS HGG+ C+G +E C ++ CPV G +S+W + CSE+CG G TR R C NP PA GG C GA T+ + C + CP+ G +++W+S+S CS +CG G R R C++P P +GG++C+G+ + C CP
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 2 Score: 152.14 bits (383), Expect = 4.676e-41 Identity = 98/223 (43.95%), Postives = 137/223 (61.43%), Query Frame = 1
Query: 4 TQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECP 672
+ W P+G CS SCG G Q+R R C NPPPA G CDG + Q C + CP+ G +++W+S+S CS CG G R R C++P P +GG++C+G+ ++ C CP G +S WS + CS C G M R RTC NP P++GG+ C G ++ ++C CPVDG + SW S+S+CS +CG G TRKR C +P P GG+ C G +T+ +C V+ CP
Sbjct: 4647 SAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 3 Score: 143.28 bits (360), Expect = 5.988e-38 Identity = 91/223 (40.81%), Postives = 134/223 (60.09%), Query Frame = 1
Query: 4 TQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECP 672
++W+ + +C+ SCG G Q+RTR+C NP H G+ C+G+ E C ++ CPV G +S+W + CSE CG G TR R C NP PA GG C GA + + C + CP+ G +++W+S+S CS +CG G R R C++P P +GG++C+G+ + C CP G +S WS + CS C G M R RTC NP P++GG+ C G ++ ++C CP
Sbjct: 4590 SEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812
The following BLAST results are available for this feature:
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