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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006688 ID=TCONS_00006688|Name=TCONS_00006688|organism=Clytia hemisphaerica|type=transcript|length=415bpRun BLAST on NCBI transcript from alignment at sc0000069:535313..541975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006688 ID=TCONS_00006688|Name=TCONS_00006688|organism=Clytia hemisphaerica|type=transcript|length=6663bp|location=Sequence derived from alignment at sc0000069:535313..541975- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006688 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 2.032e-31 Identity = 66/137 (48.18%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 1 PAHGGKECVGNTKESKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGFSSWSLYGECSELCGGGEQERSRTCTNPTPAHGGKDCEGKIEETRPCNTQKC 411
PA+GGK C G+ E + C+ K CPVDG +S WS + EC+ +CG G TR RTC NPS HGG+ C+G + E C ++ CPV G +S+W +G CSE CG G Q R+R C NP PA GG C+G + + CN + C
Sbjct: 4561 PANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 HSP 2 Score: 112.849 bits (281), Expect = 1.181e-28 Identity = 58/135 (42.96%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 7 HGGKECVGNTKESKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGFSSWSLYGECSELCGGGEQERSRTCTNPTPAHGGKDCEGKIEETRPCNTQKC 411
HGG+ C GN E C ++ CPV G +S+W + CSE+CG G TR R C NP PA GG C GA T+ + C + CP+ G +++W+ + CS CGGG ++R+R C++P P +GG+ CEG ++ CN+ C
Sbjct: 4620 HGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 3 Score: 105.916 bits (263), Expect = 2.987e-26 Identity = 63/133 (47.37%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 19 ECVG-NTKESKQCKVKECP-VDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGFSSWSLYGECSELCGGGEQERSRTCTNPTPAHGGKDCEGKIEETRPCNTQKC 411
ECV N S +V V GG+S WS++ CS CG G+ R R C P PA+GGK CQG+ E + C+ K CPVDG +S WSL+ EC+ CG G Q R+RTC NP+ HGG+ CEG E CN + C
Sbjct: 4508 ECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 4 Score: 102.449 bits (254), Expect = 3.711e-25 Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 1 PAHGGKECVGNTKESKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGFSSWSLYGECSELCGGGEQERSRTCTNPTPAHGGKDCEGKIEETRPCNTQKC 411
P +GG++C G+ +S C CP G +S WS + CS C G M R RTC NP P++GG+ C G ++ ++C CPVDG + SW + +CS CGGGE+ R R C +P P GG+ C G + CN Q C
Sbjct: 4732 PQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 5 Score: 99.3673 bits (246), Expect = 4.866e-24 Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query: 1 PAHGGKECVGNTKESKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVDGGFSSWSLYGECSELCGGGEQERSRTCTNPTPAHGGKDCEGKIEETRPCNTQKC 411
PA GG C G + + C + CP+ G +++W+S+S CS +CG G R R C++P P +GG++C+G+ + C CP G +S WS +G CS C GG+ R RTC NP P++GG+ C G + + CNT C
Sbjct: 4675 PAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 The following BLAST results are available for this feature:
BLAST of TCONS_00006688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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