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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006685 ID=TCONS_00006685|Name=TCONS_00006685|organism=Clytia hemisphaerica|type=transcript|length=2168bpRun BLAST on NCBI transcript from alignment at sc0000069:528767..541112- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006685 ID=TCONS_00006685|Name=TCONS_00006685|organism=Clytia hemisphaerica|type=transcript|length=12346bp|location=Sequence derived from alignment at sc0000069:528767..541112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006685 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 302.368 bits (773), Expect = 2.092e-86 Identity = 150/337 (44.51%), Postives = 208/337 (61.72%), Query Frame = 3
Query: 1158 VNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCN 2168
V+G + +WS + CS CG G + RSR CN PA+GG+ C GS + C + C VDG S WS + +C+++CG G+ RTR+C NPS HGG+ CEG VE C ++ CPV+G W +W +G+C CG G Q R R CNNP PA GG C G ++ CN CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S +CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + + CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCN 4864 HSP 2 Score: 280.026 bits (715), Expect = 7.018e-79 Identity = 149/342 (43.57%), Postives = 208/342 (60.82%), Query Frame = 3
Query: 987 VNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCP 2012
V+G +S W + CS CG G+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN Q CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 3 Score: 273.478 bits (698), Expect = 1.064e-76 Identity = 158/342 (46.20%), Postives = 208/342 (60.82%), Query Frame = 3
Query: 474 VDGGVSQWSAFSKCSKSCGVGEHERTRTCTNPPPQHGGKECDEDLKEVQECQIKKCPVNGGYSDWSEFGECSTECGPGVQSRERECNNPSPAHGGKGCVGEAKETRKCEDMPCPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECP 1499
V GG SQWSA+ CS +CG G +R+R C P P +GGK C E++ CQ K CPV+G +S+WS + EC+ CG G Q+R R CNNPS HGG+ C G A E C PCPV G +S+W + CSE+CG G TR R C NP PA GG C GA T+ + C + CP++GKW++W + CS CGGG + R+R C++P P + G C+GS S CN+ CP +GNW WSG+G CS+ C GG R R C+N P++GGR C G +Q +CNT C VDG +W ++S+CS +CG G R R C +P P GG+ C G + C V+ CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 4 Score: 265.774 bits (678), Expect = 3.495e-74 Identity = 160/342 (46.78%), Postives = 209/342 (61.11%), Query Frame = 3
Query: 645 VNGGYSDWSEFGECSTECGPGVQSRERECNNPSPAHGGKGCVGEAKETRKCEDMPCPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCP 1670
V+GG+S WS + CS CG G+Q R R CN P PA+GGK C G E R C++ PCPVDG +S WS + EC+ +CG G TR RTC NPS HGG+ C+G + E C ++ CPV+G WS+W +G CS+ CG G QTR+R CNNP PA G+ C G+ T + CN CP++G W W+ + CS CGGG + R+R C++ P +GGRKC GS QS CN+ C G S WS + CS+ C G R R+C NP P++GG+ C G + + C CPV+G+WGSW S+ C CGGG + R R C++P P GG+ CPG V CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 248.44 bits (633), Expect = 1.838e-68 Identity = 130/300 (43.33%), Postives = 176/300 (58.67%), Query Frame = 3
Query: 1269 GRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCN 2168
R GS Q V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN CPV+G W W + +C++ CG G QTR R CNNP PA GG C G+ Q CN + CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + + CN
Sbjct: 4511 ARNLMGSVLVRVPVIVQ---VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN 4807 HSP 6 Score: 241.506 bits (615), Expect = 3.780e-66 Identity = 147/328 (44.82%), Postives = 201/328 (61.28%), Query Frame = 3
Query: 3 STSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVNGGFSEWSSYGVCSKTCGGGTQERKRECNTPKPAHGGENCKGETQQSRTCKLKECPVDGGVSQWSAFSKCSKSCGVGEHERTRTCTNPPPQHGGKECDEDLKEVQECQIKKCPVNGGYSDWSEFGECSTECGPGVQSRERECNNPSPAHGGKGCVGEAKETRKCEDMPCPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECP 986
S +CG G+Q R+R C P PA+ GK C G E + C+ K CPVDG +S WS + EC+ CG G TR RTC NPS HGG+ C+G +E C ++ CPV+G +S W +G CS++CG GTQ R R CN P PA GG C G Q + C + CP+ G + W+++S CS SCG G +RTR C++P PQ+GG++C+ + C CP +G +S WS +G CS C G R R C+NP P++GG+ C G + ++C CPVDG + SW S+S+CS +CG G TRKR C +P P GG+ C G +T+ +C V+ CP
Sbjct: 4542 SVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 7 Score: 238.81 bits (608), Expect = 3.364e-65 Identity = 139/325 (42.77%), Postives = 188/325 (57.85%), Query Frame = 3
Query: 183 CGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVNGGFSEWSSYGVCSKTCGGGTQERKRECNTPKPAHGGENCKGETQQSRTCKLKECPVDGGVSQWSAFSKCSKSCGVGEHERTRTCTNPPPQHGGKECDEDLKEVQECQIKKCPVNGGYSDWSEFGECSTECGPGVQSRERECNNPSPAHGGKGCVGEAKETRKCEDMPCPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECP 1157
CG G+ R R C P PA+GGK CQG+ +E + C+ K CPV+G +SEWS + C+++CG G Q R R CN P HGG C+G + C ++ CPV G S W + CS+SCG G R R C NPPP GG CD ++Q C + CP++G ++ W+ + CS CG G + R R C++P P +GG+ C G ++ C PCP G +S WS + CS C G M R RTC NP P++GG+ C G ++ ++C CPV+G W SW + CS CGGG +TR R C++P P G PC G +T RCN CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00006685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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