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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006683 ID=TCONS_00006683|Name=TCONS_00006683|organism=Clytia hemisphaerica|type=transcript|length=1426bpRun BLAST on NCBI transcript from alignment at sc0000069:528316..541112- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006683 ID=TCONS_00006683|Name=TCONS_00006683|organism=Clytia hemisphaerica|type=transcript|length=12797bp|location=Sequence derived from alignment at sc0000069:528316..541112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006683 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 275.404 bits (703), Expect = 5.350e-80 Identity = 148/325 (45.54%), Postives = 202/325 (62.15%), Query Frame = 3
Query: 354 CGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCP 1328
CG G+ R R C P PA+GGK CQG+ E + C+ K CPV+G WS W + C++ CG G QTR+R+CNNP+ H G PC+G++ CN CPV+G W W +G CS+ CG GT++R+R CNN PA GG C G+ TQ CN ++C + G +TW+++S CS +CG G RTR C++P P +GG+ CEG+ V+ C CP +GNW W +G+C C GG R+R C+NP P++GG+ C G ++ CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN Q CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 256.914 bits (655), Expect = 9.300e-74 Identity = 138/317 (43.53%), Postives = 196/317 (61.83%), Query Frame = 3
Query: 474 VNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNP 1424
V+G +S W + CS CG G+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WG W +S C+ CGGG +TR R C++P
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHP 4844 HSP 3 Score: 246.514 bits (628), Expect = 4.193e-70 Identity = 150/325 (46.15%), Postives = 198/325 (60.92%), Query Frame = 3
Query: 183 CGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCP 1157
CG G+ R R C P PA+GGK CQG+ +E + C+ K CPVDG +S WS + EC+ +CG G TR RTC NPS HGG+ C+G + E C ++ CPV+G WS+W +G CS+ CG G QTR+R CNNP PA G+ C G+ T + CN CP++G W W+ + CS CGGG + R+R C++ P +GGRKC GS QS CN+ C G S WS + CS+ C G R R+C NP P++GG+ C G + + C CPV+G+WGSW S+ C CGGG + R R C++P P GG+ CPG V CN CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 4 Score: 244.202 bits (622), Expect = 2.451e-69 Identity = 149/328 (45.43%), Postives = 199/328 (60.67%), Query Frame = 3
Query: 3 STSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECP 986
S +CG G+Q R+R C P PA+ GK C G E + C+ K CPVDG +S WS + EC+ CG G TR RTC NPS HGG+ C+G +E C ++ CPV G +S+W + CSE+CG G TR R C NP PA GG C GA T+ + C + CP++GKW++W + CS CGGG + R+R C++P P + G C+GS S CN+ CP +GNW WSG+G CS+ C GG R R C+N P++GGR C G +Q +CNT C VDG +W ++S+CS +CG G R R C +P P GG+ C G + C V+ CP
Sbjct: 4542 SVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 177.178 bits (448), Expect = 9.476e-47 Identity = 97/223 (43.50%), Postives = 127/223 (56.95%), Query Frame = 3
Query: 756 GRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNP 1424
R GS Q V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN CPV+G W W + +C++ CG G QTR R CNNP PA GG C G+ Q CN + CP++G W W +S+C+ CGGG + R R C++P
Sbjct: 4511 ARNLMGSVLVRVPVIVQ---VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDP 4730 The following BLAST results are available for this feature:
BLAST of TCONS_00006683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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