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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006674 ID=TCONS_00006674|Name=TCONS_00006674|organism=Clytia hemisphaerica|type=transcript|length=1387bpRun BLAST on NCBI transcript from alignment at sc0000069:527851..541975- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006674 ID=TCONS_00006674|Name=TCONS_00006674|organism=Clytia hemisphaerica|type=transcript|length=14125bp|location=Sequence derived from alignment at sc0000069:527851..541975- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006674 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 276.174 bits (705), Expect = 1.802e-80 Identity = 138/321 (42.99%), Postives = 195/321 (60.75%), Query Frame = 1
Query: 307 LQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTHKCP 1269
+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + + CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN CP
Sbjct: 4549 IQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 275.018 bits (702), Expect = 4.885e-80 Identity = 148/325 (45.54%), Postives = 202/325 (62.15%), Query Frame = 1
Query: 124 CGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCP 1098
CG G+ R R C P PA+GGK CQG+ E + C+ K CPV+G WS W + C++ CG G QTR+R+CNNP+ H G PC+G++ CN CPV+G W W +G CS+ CG GT++R+R CNN PA GG C G+ TQ CN ++C + G +TW+++S CS +CG G RTR C++P P +GG+ CEG+ V+ C CP +GNW W +G+C C GG R+R C+NP P++GG+ C G ++ CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN Q CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 3 Score: 264.618 bits (675), Expect = 1.667e-76 Identity = 146/323 (45.20%), Postives = 201/323 (62.23%), Query Frame = 1
Query: 415 VNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGG 1383
V+G + +WS + CS CG G + RSR CN PA+GG+ C GS + C + C VDG S WS + +C+++CG G+ RTR+C NPS HGG+ CEG VE C ++ CPV+G W +W +G+C CG G Q R R CNNP PA GG C G ++ CN CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WGSW S+ C+ CGGG + R R C++P P GG
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGG 4850 HSP 4 Score: 225.713 bits (574), Expect = 3.193e-63 Identity = 142/309 (45.95%), Postives = 188/309 (60.84%), Query Frame = 1
Query: 1 PAHGGKECVGNTKESKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCP 927
PA+GGK C G+ E + C+ K CPVDG +S WS + EC+ +CG G TR RTC NPS HGG+ C+G + E C ++ CPV+G WS+W +G CS+ CG G QTR+R CNNP PA G+ C G+ T + CN CP++G W W+ + CS CGGG + R+R C++ P +GGRKC GS QS CN+ C G S WS + CS+ C G R R+C NP P++GG+ C G + + C CPV+G+WGSW S+ C CGGG + R R C++P P GG+ CPG V CN CP
Sbjct: 4561 PANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 208.379 bits (529), Expect = 2.201e-57 Identity = 120/268 (44.78%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 580 CRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGG 1383
+V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN CPV+G W W + +C++ CG G QTR R CNNP PA GG C G+ + CN + CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S CN+ CP +GNW W +G+C+ C GG R+R C+NP P++GG
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGG 4793 The following BLAST results are available for this feature:
BLAST of TCONS_00006674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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