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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006667 ID=TCONS_00006667|Name=TCONS_00006667|organism=Clytia hemisphaerica|type=transcript|length=1009bp ACTGAAGAAAAACAATGCAAAGTCAAAGAGTGTCCAGTCAATGGAAAATG GAGTTCATGGGGAGGTTATGGAGGTTGCAGCAAACGATGCGGTGGAGGCT TACAAACGAGAAGTCGTTCCTGTAATAACCCAGCTCCCGCACACAGTGGT AATCCATGCAAAGGAAGCTCAACTTCATCCAAGAGATGTAATACTCATGA ATGTCCAGTGAATGGTAATTGGGGTAAATGGTCAGGATTCGGTGTCTGTA GTAAGAAATGTGGAGGAGGAACGAAATCTCGTTCAAGAAGATGTAACAAC TCTTCACCAGCTCATGGTGGACGTAAATGCTCAGGATCTTCAACTCAATC TGCTCAATGCAATACCCAACACTGTCGTGTTGACGGAGGGTTAAGTACGT GGTCAGCTTTCTCTAAATGTTCGAAAGCTTGTGGTGCTGGTCACACTCAC CGTACACGATCCTGCACCAATCCCTCACCTGCACATGGTGGTAAAGGATG TGAAGGCGCATTGGTTGAAAAGAAAAGTTGTAAAGTCAAAGAATGCCCAG TCAATGGCAATTGGGGATCATGGGGTTCATATGGATCATGTGACAATAAA TGTGGTGGAGGTGTTCAAGAACGATTCCGATATTGTAATAATCCCGCCCC CGCCCATGGTGGTAAAGGATGTCCTGGATACGCCAAAATGGTCAGAGCTT GCAATACTCATAAATGCCCAGtcaACGGCAATTGGGGCAAATGGGGAGGC TTCAGTTCTTGCAACAAACGATGTGGAGGAGGTTTACAAACAAGATACAG ATCATGTAATAACCCAACACCTGCTCATGGTGGAAAATCATGCCCTGGTT CTCCCGCTCACTCACGATCTTGTAACACTCAAAAATGCCCAGTTAATGGT AATTGGGGATCATGGGGTTCATATGGATCATGTAACAATAAATGTGGTGG AGGTGTTCAAGAACGATTCCGTTATTGTAATAATCCCGCCCCCGCCCATG GTGGTAANN Run BLAST on NCBI transcript from alignment at sc0000069:527851..533185- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006667 ID=TCONS_00006667|Name=TCONS_00006667|organism=Clytia hemisphaerica|type=transcript|length=5335bp|location=Sequence derived from alignment at sc0000069:527851..533185- (Clytia hemisphaerica) ACTGAAGAAAAACAATGCAAAGTCAAAGAGTGTCCAGGTAGAGTGAGATC
TGTTAGAAACTTATTCGACTATGTTTTCGTGACTTCGTTTTAGCTATATA
ATGACTCAATCTTTTCAATCATCTCCCAAAACTGATGAATTTGCACCCAT
AACTGCTACACTGTAAATCAGAATTCAAAGTGGAAAAGTAGCTTATTTTC
CTTTGTTCATTGAGTGTTATGAAAATCAACATAAATTACTAAATTTAAGT
TGATGAAATTACACGCTACACGAGGTTTAAAATGTTGCATTCGACATCAC
TTGTATCAAAGTTTCAAAACAATTTGCTTGTAGATTTTCATTTAACATCA
ATTCTTTTTTTTCGACGATAGTCAATGGAAAATGGAGTTCATGGGGAGGT
TATGGAGGTTGCAGCAAACGATGCGGTGGAGGCTTACAAACGAGAAGTCG
TTCCTGTAATAACCCAGCTCCCGCACACAGTGGTAATCCATGCAAAGGAA
GCTCAACTTCATCCAAGAGATGTAATACTCATGAATGTCCAGGTACCATT
TGTATGATTATCTTGCAACTATTATTGGACTATTTGTTCAGACATTGTTT
ATTCGGGCTGCATGAAATACATTGATAAAGAGAGTTTCGGGATTGAAAAT
TATGCCAAGAAATAGTGAATTTGTCCATCTAAAATTCGATGCCATCCTTA
TGTTTATATTGTCTATACATCTACTTTGAACTGAATTTCATTCGCTAACA
AAAATGCAATAATTTTTCACCTTAACCGTCAAGTTGAAAAATTATTGAAA
AATTATTGAAAAATTACTTCATTTTAATGTGATATTTCACTTTTAATCTT
CTTTCCGTCTCAGTGAATGGTAATTGGGGTAAATGGTCAGGATTCGGTGT
CTGTAGTAAGAAATGTGGAGGAGGAACGAAATCTCGTTCAAGAAGATGTA
ACAACTCTTCACCAGCTCATGGTGGACGTAAATGCTCAGGATCTTCAACT
CAATCTGCTCAATGCAATACCCAACACTGTCGTGGTATGAATTCACTACA
TTATTGGAATAATTTTTGCGGAAATTAATTTTAGTGCTTTCGGAACCATG
AAATGCAATTTTTTCCCAATTTTATCGAAAAATGAAAGAAATTTGTCCAC
AAAAGGGCAAAATCGAGACAATTAAAACCCGCGAAATGCAATTTTTCTGA
TTTATTTTTTCGACCGTGAATAATTTTTCCCATGAATGATTCTCATGTAA
AATTTAAAATAAAAAAATGAAGGAAATTACGTCAAAAAAAGATGCTGATT
CGTGAAAATTCTTTCCCTGCGGTTTTTTTATTTTATGTGTTCGCGAAAAC
AAATCCCGCAAAAATTATTTCGTTTAAATGTCTGTTCGCGAAAATTAGTC
AGTCCACTTAAAGGATCGCTTTTTGGATTTTAAAACCGTTAAACATTGCT
CGTTTTCGTGATTCAGATTTTCTTAATTCTTCATTTAGTTGACGGAGGGT
TAAGTACGTGGTCAGCTTTCTCTAAATGTTCGAAAGCTTGTGGTGCTGGT
CACACTCACCGTACACGATCCTGCACCAATCCCTCACCTGCACATGGTGG
TAAAGGATGTGAAGGCGCATTGGTTGAAAAGAAAAGTTGTAAAGTCAAAG
AATGCCCAGGTATCAAAAGTTTACTCTTAGTGCTCTTGGAAAAGTTTTTA
GTTTTGAAATTATTTGTGCTGGATTAATCCAGAAGCGTTGACAAGGGGGT
GTTGGGGAGCAGATTCTTTTTATTTGAATAGATAATTACCGTGTCATAGA
AACCTGCTCCCCTACGCAAATTGTGCGTCCCGCTTGTCTACTGAAGCTAC
TGTACAGATTACAGTCAATATTAAATTGGTCAAAATTTACTCAGCTTTCT
GCTCAGCCACGATAAACTTCCAATATGAACAATATTTACGGTTTAAGTAG
ACCGGTATAATCTACGTAATAAAAATAAAGAGCTTGAGTTTAGCTGTTAC
GTACCCACTAGCTTTGAGTACTTCTATCTGTTAACTTAACTACACCATTC
TGTTTCATGTCTTAGACAATATCCTAAGAGATAAGACTTTGAATAAGCGA
ATAACATGATTCTACTTCACAGTCGATCTAAATATCTTATCATTTGTATT
TCCCCTTTCTCTTACCCATAGTCAATGGCAATTGGGGATCATGGGGTTCA
TATGGATCATGTGACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCG
ATATTGTAATAATCCCGCCCCCGCCCATGGTGGTAAAGGATGTCCTGGAT
ACGCCAAAATGGTCAGAGCTTGCAATACTCATAAATGCCCAGGTAAGGTA
TCTATTTTGAACTTTACCGCAGAAACCTTTTAAACTATCCATAATGCATT
CAAACCAGTCAAAACGTTTATATCATCTTCAGTTACCAGTTAACAACTTT
TATTTATATCATAGTCAATGGTAATTGGGGCAAATGGGGAGGCTTCAGTT
CTTGCAACAAACGATGTGGAGGAGGGGTACAAACAAGATACAGATCATGC
AATAACCCAACACCTGCACATGGTGGAAAATCATGTCCTGGTTCTCACGC
TCACTCACAATCGTGCAATACTCAAAAATGTCCAGGTACTTACTTTTCAA
GATTCAAATTATCAAATCATGAAGTCAATCCCTAACTTATCTACATATTT
AACGTCCGTCTCAAAAGTACATGTGGACCCTTTATTTTGTAACATTTTTT
CAGCATACGTTCATGCTGTGGTAGAATGTTATATACCGCTGTAAAGATAT
TTTTCGCCACAGCCCTCTGAAGTTTTTGTCTATTTGTGGTCATTTTCAGC
CGTTTCAGCCCTACTTCACAGGGCTTTATTAACTTATTATCAACAAAAAT
AAGAGCAGCAGATTTAACTTTTCAACCAGAAAATAAAATTTTCATCTTCA
ACTTTTCAAAAATCTCTAATCTAATATAGGTTAATAGGTTATTCTCCTGA
AAATATCTTTCCAACTCTGTATAACTTTTTATCATAGCATAAATGGGTGC
TGGCAAATTGTTACAAGGTTTAATGTCCACGTATACTTTTGAAACCAATC
TTGGTAACAGAAAAATCCTTTTTGTTTGCACAAACCAGGGCTCAGCGAAA
TAAGTTTCCCTTTTTACTGATGGCATCAATTATTTCCATTAAGTTCAACG
TTGAGAGTTCTTCAATTTTTAGCCCCCTCCCCAACTCCTCCTTTCTACAG
GAACACGGACACACTGACTTTTTTCAGCTTTTTTTTCAAAAATATTATTT
ATCTTTTAGTCAATGGCAATTGGGGCAAATGGGGAGGTTTCAGTTCTTGC
AACAAACGATGTGGAGGAGGTCTACAAACAAGATACAGATCATGTAATAA
CCCATCACCTGCACATGGTGGAAAGTCATGTCCTGGTTCTCACGCTCACT
CACAATACTGTAACACTCAAAAATGCCCAGGTATATGATGTAACGTTAAT
CGATCAATGAAAAAATTGTGATAATTAGCTGTTAAAGTGCTCTAGATTTG
TAATTTCACATCTGAGAATGATAATTAGCTTTCAATCTGAGCTTGGAAGT
TTCCTTTTAGCTTATTAACCGACCATTAAAAGAATCTACATACCAACGAC
ATTACTCATGTGTGATATGCTACAACGTTTCTAAAAGAGGTGATGTGTTA
ACTCCAAAGTCATTACTAGAGAAAGTTTAACCTGAACTTTGTTTTTTTTA
TTTAGTCAACGGCAATTGGGGCAAATGGGGAGGCTTCAGTTCTTGCAACA
AACGATGTGGAGGAGGTTTACAAACAAGATACAGATCATGTAATAACCCA
ACACCTGCTCATGGTGGAAAATCATGCCCTGGTTCTCCCGCTCACTCACG
ATCTTGTAACACTCAAAAATGCCCAGGTAATTTTTAAGCCATAATATTAT
CATCAATCGATAATTTCAAATTAACCATTATCGACGTTTGTTTGGTCATT
TAGTTAGTTTACAGTTACTTCATAATGGCACTGACTGAATTCTTCATGGT
TGTCCATGTTTAAAAATTAAATCTGAAGCTAAGAGTATAATTATTAAGTC
GTGGATAATGTACTGACAATCGATAAACTTAATTGGTCAGAGAAGGTGGC
AAACAAGTATAATTACTGCGAACTAATCATTAAGCTGCTAAGTTTGATTT
TTGTTTGTTTCATGCTTTTGGACCCAATATATGGAGTTTAAAAAGTTTAT
TTGTCATATTTTAGTCAACGGTAATTGGGGCAAATGGGGAGGCTTCAGTT
CTTGCAACAAACGATGTGGAGGAGGTCTACAAACGAGATACAGATCATGC
AATAACCCAACACCTGCACATGGTGGAAAATCATGCCCTGGTTCTCCCGC
TCACTCACGATCTTGTAACACTAAAAAATGTCCAGGTAATTTTTAAGCCA
TAATATTATCATCAATCGATAATTTCAAATTAACCATTATCGACGTTTGT
TTGGTCATTTAGTTAGTTTACAGTTACTTCATAATGGCACTGACTGAATT
CTTCATGGTTGTCCATGTTTAAAAATTAAATCTGAAGCTAAGAGTATAAT
TATTAAGTCGTGGATAATGTACTGACAATCGATAAACTTAATTGGTCAGA
GAAGGTGGCAAACAAGTATAATTACTGCGAACTAATCATTAAGCTGCTAA
GTTTGATTTTTGTTTGTTTCATGCTTTTGGACCCAATATATGGAGTTTAA
AAAGTTTATTTGTCATATTTTAGTCAACGGTAATTGGGGCAAATGGGGAG
GCTTCAGTTCTTGCAACAAACGATGTGGAGGAGGTCTACAAACGAGATAC
AGATCATGCAATAACCCAACACCTGCACATGGTGGAAAATCATGCCCTGG
TTCTCACGCTCACTCGCAGTCTTGCAACACTCATAAATGCCCAGGTATCA
AAGATAATATCAATCATCCAATTAAAATTAAAATTGTATCGACTAGACCA
TTGATTGTAGACATGCTTCTGAAAATTTGTCTGTGTTTTGGTATGGCTAT
TTCAAAACAAAATCAGATATTTTCTGCAAATTAGATTAAAAAGTTTTCAC
CTTTCTCCATAAGTTTGTGAAGTCTAAGGTAACAAAAACATGATATGAAT
GGCCTAGTATAAATTTTTACCATTTAAAGTGAACTCTAGAAGTACTACTT
CCGTTTTCTTTCCCACAGTTAATGGTAATTGGGGATCATGGGGTTCATAT
GGATCATGTAACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCGTTA
TTGTAATAATCCCGCCCCCGCCCATGGTGGTAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006667-exon-sc0000069-1575043694:533149..533185 | TCONS_00006667-exon-sc0000069-1575043694:533149..533185 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:532644..532814 | TCONS_00006667-exon-sc0000069-1575043694:532644..532814 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:532152..532322 | TCONS_00006667-exon-sc0000069-1575043694:532152..532322 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:531527..531697 | TCONS_00006667-exon-sc0000069-1575043694:531527..531697 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:530844..531014 | TCONS_00006667-exon-sc0000069-1575043694:530844..531014 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:529260..529430 | TCONS_00006667-exon-sc0000069-1575043694:529260..529430 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1575043694:527851..527967 | TCONS_00006667-exon-sc0000069-1575043694:527851..527967 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:533149..533185 | TCONS_00006667-exon-sc0000069-1510915933:533149..533185 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:532644..532814 | TCONS_00006667-exon-sc0000069-1510915933:532644..532814 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:532152..532322 | TCONS_00006667-exon-sc0000069-1510915933:532152..532322 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:531527..531697 | TCONS_00006667-exon-sc0000069-1510915933:531527..531697 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:530844..531014 | TCONS_00006667-exon-sc0000069-1510915933:530844..531014 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:529260..529430 | TCONS_00006667-exon-sc0000069-1510915933:529260..529430 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1510915933:527851..527967 | TCONS_00006667-exon-sc0000069-1510915933:527851..527967 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:533149..533185 | TCONS_00006667-exon-sc0000069-1491911889:533149..533185 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:532644..532814 | TCONS_00006667-exon-sc0000069-1491911889:532644..532814 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:532152..532322 | TCONS_00006667-exon-sc0000069-1491911889:532152..532322 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:531527..531697 | TCONS_00006667-exon-sc0000069-1491911889:531527..531697 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:530844..531014 | TCONS_00006667-exon-sc0000069-1491911889:530844..531014 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:529260..529430 | TCONS_00006667-exon-sc0000069-1491911889:529260..529430 | Clytia hemisphaerica | exon |
TCONS_00006667-exon-sc0000069-1491911889:527851..527967 | TCONS_00006667-exon-sc0000069-1491911889:527851..527967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000069 | supercontig | sc0000069:527851..533185 - |
Blast
BLAST of TCONS_00006667 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 245.358 bits (625), Expect = 1.474e-71 Identity = 133/297 (44.78%), Postives = 184/297 (61.95%), Query Frame = 1
Query: 1 TEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCP 891
E + C+ K CPV+G WS W + C++ CG G QTR+R+CNNP+ H G PC+G++ CN CPV+G W W +G CS+ CG GT++R+R CNN PA GG C G+ TQ CN ++C + G +TW+++S CS +CG G RTR C++P P +GG+ CEG+ V+ C CP +GNW W +G+C C GG R+R C+NP P++GG+ C G ++ CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN Q CP
Sbjct: 4573 LEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 234.187 bits (596), Expect = 1.278e-67 Identity = 131/302 (43.38%), Postives = 187/302 (61.92%), Query Frame = 1
Query: 100 LQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGG 1005
+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + + CNT CPV+G+WGSW S+ C+ CGGG + R R C++P P GG
Sbjct: 4549 IQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGG 4850 HSP 3 Score: 157.918 bits (398), Expect = 1.178e-41 Identity = 95/211 (45.02%), Postives = 130/211 (61.61%), Query Frame = 1
Query: 373 CRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGG 1005
+V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN CPV+G W W + +C++ CG G QTR R CNNP PA GG C G+ + CN + CP++G W +W S+ +C+ CGGG ++R R C++P P +GG
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGG 4736
The following BLAST results are available for this feature:
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