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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006634 ID=TCONS_00006634|Name=TCONS_00006634|organism=Clytia hemisphaerica|type=transcript|length=842bp
NNCAAGTCGTGTTACGTCCTTTAATCGTCAACATGGAAGCACCTCCTGCT
GCTTCTGTTAATATCATTGAACCTCCTGCTATCCAGCCGGTTTTCAACCC
TCCAAAATTATACGGGAACATGAAACCGAACGTCAATACAAAACCCATAC
CCGTCGACCCACAGTTTCGACCCATCCATCCTGGTGCTTACAACACACAC
CATGGTGATTATAAGAAAAGGGATACTTTGCGTCGTGGTACTTCAAGCCA
CAAACGACATTatcgaaagattcgaaatcaGAATCCCCGTCTAAGATCAC
GTGATCAAATACGGCATCGCTCAAGGCGATCTTTAACATGACGGAGGAGA
GCCACTCAAACAAACACAGCGAAGGAGGGAAACAAGAGGATTTTCCGAAA
ACCTTTGCCTGCAAATTCATCGGAGGAGAAGAGATGATGTCATTGCAGTG
ACGTTCGAAGAACACACCACCTCAGACGATTTCCATTTTTGATCCGAtca
aactgcagtcattaaaaTTGTGACATTGATAAAACTCTTGTGATTATTCG
AATGAAGGAAATACAATACAAAATTAACGCTAGCTAGCAATCAACCTATT
CAACGCACAGACATTTTATTACAAAGACCGAACATCGAAATAGTCCAGAT
TTAGCCTTTATTCATAAATCGCAGAAACATTATTCAAATCAGGCTATTTC
AAACACTTACGCCTCGAtgttttagaaaatttagaattttaaaactttac
attgtacataaattttaaatctcacgttctattttctttttggttgttga
actttttgataaaaataagatttataAAGCCATACTTTACAt Run BLAST on NCBI transcript from alignment at sc0000069:409026..411196- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006634 ID=TCONS_00006634|Name=TCONS_00006634|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at sc0000069:409026..411196- (Clytia hemisphaerica)
NNCAAGTCGTGTTACGTCCTTTAATCGTCAACATGGAAGCACCTCCTGCT
GCTTCTGTTAATATCATTGAACCTCCTGCTATCCAGCCGGTTTTCAACCC
TCCAAGTAAGTCACCAGCTGACACACAACGTTGTTTCAACGTTCAGCTAA
CGTTATATGGACGTTGTGAATATTAGAAAAACGTTTAAACGACGTTGTGT
ACCAGCTGGGTCACCCTATTTATCCCTGGTTTCTTGCCGATTTAGCAATG
GTATCGTAGGTATGCTCTAAATCAGCCATCTTCAATCTGAACGAAAAATA
AAGGTCTGAAGTCTCACGATCACGAAAAGTACTCATCTACATGTCCCGGC
AGAAGTTGATTAGACAACATACCATATAGATCTTAGTATTTTCATCTACT
AAATTGAGCATCTTAATACTTAAAATATGCAAGAAGAACGCATATTGTAT
CGTGAGAACCAACATGAAATTTAAGTTGCGGAGATTGACTGTGAGAGAAT
TATCGCGTATTTCTAAGCCGAATTAATATCCAAATAATCGAAGATGGAGA
TTATATAATTTTTTAGATAATTAAAATAAAAACTATTTGGTTTCCTATCT
ACAGAATTATACGGGAACATGAAACCGAACGTCAATACAAAACCCATACC
CGTCGACCCACAGTTTCGACCCATCCATCCTGGTGCTTACAACACACACC
ATGGTGATTATAAGAAAAGGGATACTTTGCGTCGTGGTGAGATTCTATTT
TGTGTTAAATCTTTCACTTTCGAGTTCTAATTTCAACCCAATAGGTCTTA
TTGGAGTTTTTGTTTTTTTCTAAAAGCGACGTATTGTGGGATTGTTTCGA
GAGTATTACAATAGAAATCTCTTAAGAATTCCTCGAGGGATTTCTATTGT
AATACTCCCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAAATAAAA
ACTCCGATAAGATCTATTAGCGGAATATAAAGGTGTTTTTTAGTGGTTGT
TGACATCAAGTTTCTATTTTGAGCTGATAAACGGAAAAAATTGCCTAAAA
AAACCTTGTTAGTACTGGTGCCTCGATATGTTTTATGTATCAATATTTCA
CTTGCCTTCTTTAGGTACTTCAAGCCACAAACGACATTATCGAAAGATTC
GAAATCAGAATCCCCGTCTAAGATCACGTGATCAAATACGGCATCGCTCA
AGGCGATCTTTAACATGTAAGCAGAACTTTCTTTCCTTGATTTGTTATTC
TCTTACCTTTTTCTGGTCCTGGTTTCTTTTCTTACGGGGGTCAATCTTTT
AAAGGAATTATCCTAAATGCCTCCTCAAAAATGAAAAAAATGTTAAATTG
ATTGAAAACAATATGGCGGACTATTCCACTTCAAAAATGAACATACTTCC
ACGGGAAATCTGTGAACATGCCTATGTATCTAGTGAGCAAAAGAATATGA
TATCTGCGGTCCGTTCGTTATTATCTCTTTCGTGGAAATAAGCGTCTTTT
CGTTGAAACTTCTCCCCCATCCCTTTCCTGAAAACCAGGGAGAGCGCAAA
CTTGTATTCTACAATGCGCTCTCCTCCCCCTGGCCTTTACTTGTTTTTCT
TTTCCTCTTCTCCGTAGGGCGTGTTCGATTCACTCAATGACAACATCTTT
TCTCCCTTGACATTGCAGGACGGAGGAGAGCCACTCAAACAAACACAGCG
AAGGAGGGAAACAAGAGGATTTTCCGAAAACCTTTGCCTGCAAATTCATC
GGAGGAGAAGAGATGATGTCATTGCAGTGACGTTCGAAGAACACACCACC
TCAGACGATTTCCATTTTTGATCCGATCAAACTGCAGTCATTAAAATTGT
GACATTGATAAAACTCTTGTGATTATTCGAATGAAGGAAATACAATACAA
AATTAACGCTAGCTAGCAATCAACCTATTCAACGCACAGACATTTTATTA
CAAAGACCGAACATCGAAATAGTCCAGATTTAGCCTTTATTCATAAATCG
CAGAAACATTATTCAAATCAGGCTATTTCAAACACTTACGCCTCGATGTT
TTAGAAAATTTAGAATTTTAAAACTTTACATTGTACATAAATTTTAAATC
TCACGTTCTATTTTCTTTTTGGTTGTTGAACTTTTTGATAAAAATAAGAT
TTATAAAGCCATACTTTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006634-exon-sc0000069-1575043694:411092..411196 | TCONS_00006634-exon-sc0000069-1575043694:411092..411196 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1575043694:410461..410592 | TCONS_00006634-exon-sc0000069-1575043694:410461..410592 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1575043694:409981..410082 | TCONS_00006634-exon-sc0000069-1575043694:409981..410082 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1575043694:409026..409528 | TCONS_00006634-exon-sc0000069-1575043694:409026..409528 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1510915933:411092..411196 | TCONS_00006634-exon-sc0000069-1510915933:411092..411196 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1510915933:410461..410592 | TCONS_00006634-exon-sc0000069-1510915933:410461..410592 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1510915933:409981..410082 | TCONS_00006634-exon-sc0000069-1510915933:409981..410082 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1510915933:409026..409528 | TCONS_00006634-exon-sc0000069-1510915933:409026..409528 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1491911889:411092..411196 | TCONS_00006634-exon-sc0000069-1491911889:411092..411196 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1491911889:410461..410592 | TCONS_00006634-exon-sc0000069-1491911889:410461..410592 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1491911889:409981..410082 | TCONS_00006634-exon-sc0000069-1491911889:409981..410082 | Clytia hemisphaerica | exon |
| TCONS_00006634-exon-sc0000069-1491911889:409026..409528 | TCONS_00006634-exon-sc0000069-1491911889:409026..409528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:409026..411196 - |
Blast
The following BLAST results are available for this feature:
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