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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006611 ID=TCONS_00006611|Name=TCONS_00006611|organism=Clytia hemisphaerica|type=transcript|length=3243bpRun BLAST on NCBI protein sequence of TCONS_00006611-protein >TCONS_00006611-protein ID=TCONS_00006611-protein|Name=TCONS_00006611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=854bp INAMSRQLIILFFTILTTTECISNKTAIHVGALIPQLQFRDRFCFGSSIKRun BLAST on NCBI transcript from alignment at sc0000069:292936..314605- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006611 ID=TCONS_00006611|Name=TCONS_00006611|organism=Clytia hemisphaerica|type=transcript|length=21670bp|location=Sequence derived from alignment at sc0000069:292936..314605- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000069:292936..314605- >TCONS_00006611 ID=TCONS_00006611|Name=TCONS_00006611|organism=Clytia hemisphaerica|type=CDS|length=43605bp|location=Sequence derived from alignment at sc0000069:292936..314605- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006611 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 2.499e-84 Identity = 205/660 (31.06%), Postives = 329/660 (49.85%), Query Frame = 2
Query: 143 SIKLAVEKINNSSFILPDHHIILHLKETHGRVGFALESLYQLLYTKPTKVAILGPGFSAPSKAVAELCTVFGTLQVSYSAIDPSLMSQLQYPFFFRSTPSIQSFNKVKISFFKHFGWKRVAVLYDYTDNLFFQTTDHLSKMLIANNFTNLMISGFDDDVHTRMDKLQQHNVRIIVGEFSKKGARKVFCEAYKRKMYGSKYVWMIMQGLSDTWFE----DANDIDCNSTQLLIASEGYFRATRSNLRQDNVKTLFGKTGXXXXXXXXXXXXSDYYPSKTTLSSADVHPGATFAFDATVALAEALHKA--------EIGGIVDFETYDYKNYETTFAIXXXXXXXXXXXXXXSMKYDMATRERLGEVEIQQFRKGKYCTVARHYTASDVLVFDPINSKKMFPDDVIPRDHPVIVREAILYSLSLVSGLWAISWXXXXXXXXXXXXNIKYSNIKVIKMSSPKINNIICFGCMLCYVAVVLYGLDSRMIDVHYIPLTCNSIAIMLSIGFTLAFGGLFSKTFRVYRVFTASKNLTRVSIKDSKLFGXXXXXXXXXXXXXXTWMIVSPFQLSLQDLD-EIEDKSRDVVTIYYIHKCKCQYQMYFFASMYGYKGLLVIFGLFLAWETRNVHLAVLNDSKYIGMAVYNVCVLGTLGIVIETAIDDKKN 2083
+++LA+E+I N S + P + + L L +T L++ Y + P + + G + + +AE + +Q+S++A P L + +YP+FFR+ PS + N + KH+ WKRV L F + + L+ +L + F +D T + KL+ ++VRII+G+F + A KVFC AY+ MYGSKY W+I +W+E +AN C LL A EGY L +KT+ GKT + +Y ++ + + H +A+D +A+ L +A I DF D+ T L + + ER+G ++ QF+ + V + +D L + IN F P+D +I+ + SL L S L A++ LG ++A FLF NIK N K+IKMSSP +NN+I G ML Y ++ L+GLD + C +L++G+T AFG +F+KT+RV+ +F K ++ IKD KL ++ ++LID+ + + W V P + +++ E + RD+ + C+ + + +Y YKGLL++FG FLAWETRNV + LNDSKYIGM+VYNV ++ +G + D+ N
Sbjct: 80 AVELAIEQIRNESLLRP-YFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQR-FSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKT--------PQQYEREYNNKRSGVGPSKFH---GYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDH-----TLGRIILNAMNETNFFGVTGQVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTL--EIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPN 718 The following BLAST results are available for this feature:
BLAST of TCONS_00006611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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